mRNA_C-linearis_contig85.16160.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig85.16160.1
Unique NamemRNA_C-linearis_contig85.16160.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig85.16160.1 vs. uniprot
Match: A0A6H5KE84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE84_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 6.660e-10
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  340 GHRWFNSHPLGGGPDLEDFQTWARTMLRRGL 432
            GHRWFNSH LGG PDL DFQ WARTMLRRGL
Sbjct:   78 GHRWFNSHQLGGDPDLIDFQAWARTMLRRGL 108
[Close]
BLAST of mRNA_C-linearis_contig85.16160.1 vs. uniprot
Match: A0A6H5KTC4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTC4_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 5.070e-9
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  340 GHRWFNSHPLGGGPDLEDFQTWARTMLRRGL 432
            GHRWFNSHPLGG PDL DFQ WARTMLRR L
Sbjct:   77 GHRWFNSHPLGGDPDLPDFQAWARTMLRRRL 107
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BLAST of mRNA_C-linearis_contig85.16160.1 vs. uniprot
Match: D8LFQ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFQ2_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 5.150e-9
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:  340 GHRWFNSHPLGGGPDLEDFQTWARTMLRRGL 432
            GHRWFNSHPLGG PDL DFQ WARTMLRR L
Sbjct:   79 GHRWFNSHPLGGDPDLPDFQAWARTMLRRRL 109
[Close]
BLAST of mRNA_C-linearis_contig85.16160.1 vs. uniprot
Match: A0A6H5L8Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Q0_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.040e-8
Identity = 23/32 (71.88%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:  337 RGHRWFNSHPLGGGPDLEDFQTWARTMLRRGL 432
            R HRWFN HPLGG P+L +FQTWART+L+RG+
Sbjct:   30 REHRWFNPHPLGGDPNLYNFQTWARTVLQRGM 61
[Close]
BLAST of mRNA_C-linearis_contig85.16160.1 vs. uniprot
Match: A0A6H5K6B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.120e-8
Identity = 24/31 (77.42%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:  340 GHRWFNSHPLGGGPDLEDFQTWARTMLRRGL 432
            GHRWFNSHPLGG P+L +FQTWART+L+RG+
Sbjct:   72 GHRWFNSHPLGGDPNLYNFQTWARTVLQRGM 102
[Close]
BLAST of mRNA_C-linearis_contig85.16160.1 vs. uniprot
Match: A0A6H5JDB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB7_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.850e-8
Identity = 24/31 (77.42%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:  340 GHRWFNSHPLGGGPDLEDFQTWARTMLRRGL 432
            GH+WFNSHPLGG P+L +FQTWART+LRRG+
Sbjct:   80 GHQWFNSHPLGGDPNLYNFQTWARTVLRRGM 110
[Close]
BLAST of mRNA_C-linearis_contig85.16160.1 vs. uniprot
Match: A0A6H5J754_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J754_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.910e-8
Identity = 24/31 (77.42%), Postives = 29/31 (93.55%), Query Frame = 1 
Query:  340 GHRWFNSHPLGGGPDLEDFQTWARTMLRRGL 432
            GHRWFNSHPLGG P+L +FQTWART+L+RG+
Sbjct:   72 GHRWFNSHPLGGDPNLYNFQTWARTVLQRGM 102
[Close]
BLAST of mRNA_C-linearis_contig85.16160.1 vs. uniprot
Match: A0A6H5KR88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR88_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 6.190e-7
Identity = 25/41 (60.98%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:  313 RTTYDTSKR-GHRWFNSHPLGGGPDLEDFQTWARTMLRRGL 432
            R ++ +S R GH WFNSHPLGG P+L +FQTWART+L+ G+
Sbjct:   40 RISFPSSARPGHMWFNSHPLGGDPNLYNFQTWARTVLQSGM 80
[Close]
BLAST of mRNA_C-linearis_contig85.16160.1 vs. uniprot
Match: A0A6H5JU52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU52_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.610e-6
Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:  340 GHRWFNSHPLGGGPDLEDFQTWARTMLRRGL 432
            G+RWF+SHPLGG P+L +FQTW RT+L+RG+
Sbjct:   92 GYRWFHSHPLGGDPNLYNFQTWTRTVLQRGM 122
[Close]
BLAST of mRNA_C-linearis_contig85.16160.1 vs. uniprot
Match: A0A6H5KMS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS8_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.000e-6
Identity = 22/31 (70.97%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:  340 GHRWFNSHPLGGGPDLEDFQTWARTMLRRGL 432
            G+RWFNSHPLGG P+L +FQTWART+L+ G+
Sbjct:   51 GYRWFNSHPLGGDPNLYNFQTWARTVLQGGM 81
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5KE84_9PHAE6.660e-1087.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTC4_9PHAE5.070e-987.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFQ2_ECTSI5.150e-987.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L8Q0_9PHAE2.040e-871.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B4_9PHAE5.120e-877.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDB7_9PHAE5.850e-877.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J754_9PHAE5.910e-877.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR88_9PHAE6.190e-760.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JU52_9PHAE2.610e-667.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMS8_9PHAE3.000e-670.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:380039..381120 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue4.6e-08
Seed eggNOG ortholog2880.D8LFQ2
Hectar predicted targeting categoryother localisation
EggNOG OGs2E3IK@1,2SAKM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size507
Cds size486
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16160.1prot_C-linearis_contig85.16160.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig85 380039..381099 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.519843-CDS-C-linearis_contig85:380038..3803441622930642.519843-CDS-C-linearis_contig85:380038..380344Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 380039..380344 -
1690881174.905991-CDS-C-linearis_contig85:380038..3803441690881174.905991-CDS-C-linearis_contig85:380038..380344Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 380039..380344 -
1622930642.5316942-CDS-C-linearis_contig85:380690..3808261622930642.5316942-CDS-C-linearis_contig85:380690..380826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 380691..380826 -
1690881174.9188874-CDS-C-linearis_contig85:380690..3808261690881174.9188874-CDS-C-linearis_contig85:380690..380826Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 380691..380826 -
1622930642.545332-CDS-C-linearis_contig85:381055..3810991622930642.545332-CDS-C-linearis_contig85:381055..381099Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 381056..381099 -
1690881174.9332037-CDS-C-linearis_contig85:381055..3810991690881174.9332037-CDS-C-linearis_contig85:381055..381099Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 381056..381099 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.5604239-UTR-C-linearis_contig85:381099..3811201622930642.5604239-UTR-C-linearis_contig85:381099..381120Chordaria linearis ClinC8C monoicousUTRC-linearis_contig85 381100..381120 -
1690881174.9513524-UTR-C-linearis_contig85:381099..3811201690881174.9513524-UTR-C-linearis_contig85:381099..381120Chordaria linearis ClinC8C monoicousUTRC-linearis_contig85 381100..381120 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig85.16160.1

>prot_C-linearis_contig85.16160.1 ID=prot_C-linearis_contig85.16160.1|Name=mRNA_C-linearis_contig85.16160.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=162bp
MGATSSTPKTTAASMPLCRHPSAAAVFPSRQHSTWACPYTRAPWPGAPGK
RRASSSAALEESDDDEDSHSSGNMSHGRSASAGNRSAPSCSPRPSSYRTT
YDTSKRGHRWFNSHPLGGGPDLEDFQTWARTMLRRGLWCTETTPTTSFEK
ILPNAGLIIYVP
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mRNA from alignment at C-linearis_contig85:380039..381120-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig85.16160.1 ID=mRNA_C-linearis_contig85.16160.1|Name=mRNA_C-linearis_contig85.16160.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1082bp|location=Sequence derived from alignment at C-linearis_contig85:380039..381120- (Chordaria linearis ClinC8C monoicous)
CAGAGATCGTCGAGGAAGACAATGGGAGCAACCTCATCTACACCTAAGAC
TACGGCCGCGTCTATGTGAGACTGGTTTTTGTGTTCTGCTTTCGCTTTCA
ACGTTCATTTGCTCTTATATGTACGTTGTGTTCTTTCGTCACCACGTGTT
TTTTTGCTTTTTCCAGCTTTTTCATCTCCCGCCCTCGCGAGCCCACAAGT
CCACAACCACAACCACACCACACCTCTCTCCTCTTTTCTACCCACCTCTG
CTTCCTTCTACGGCCCACGATGCCTCCTGCTCGCCGAATCCAAGGCCGCT
CTGCCGCCACCCCTCGGCAGCCGCTGTCTTCCCTTCCCGGCAACACAGCA
CGTGGGCGTGCCCCTACACACGCGCGCCTTGGCCCGGCGCACCCGGAAAG
CGGAGGGCGTCATCCAGTGCCGCGTTGGAGGTGAGTTGATGGCGCTCTTC
GCTCTCTGGGCTTTCCTCTTCTGTGTTTGCCGTGTTGGTCTAGTCTCGAC
TTGAAGCGTTGTCGAAAACATCGAGCTTCTTTTTTGCATGCGCGGACCGC
GGAGGAAGCAAACCAAGGCCATTCGTTTTCCGTGCATGCAGTATGTAATT
TTAAAAATAAAAACTTGTCGAGATCCGCCCATTTCAAAAACATGTCCTAC
AACACATGTACAACATGGTAGTTTTTTTAAAGTCGGTGTGTCGTGCTCCC
TGTGGAACAACTTGTAACTTTGTTTGTGTGCGTCACGATGTGCTGCCTCC
GCCTCTCCCTACGCCCCCCCTTTCAGGAATCCGATGACGATGAGGACTCC
CATTCGTCGGGCAACATGTCACACGGGCGTTCGGCTTCAGCGGGAAACCG
GTCTGCCCCTTCATGCTCGCCACGGCCCAGCTCGTACCGCACAACCTACG
ACACTTCAAAAAGAGGACACCGCTGGTTCAACTCGCACCCCCTCGGCGGG
GGTCCCGACCTCGAGGACTTTCAGACATGGGCGAGGACGATGCTGCGCAG
GGGCCTCTGGTGCACAGAGACGACGCCGACAACAAGTTTCGAAAAAATTC
TCCCCAACGCTGGCTTGATCATTTACGTGCCC
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Coding sequence (CDS) from alignment at C-linearis_contig85:380039..381120-

>mRNA_C-linearis_contig85.16160.1 ID=mRNA_C-linearis_contig85.16160.1|Name=mRNA_C-linearis_contig85.16160.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at C-linearis_contig85:380039..381120- (Chordaria linearis ClinC8C monoicous)
ATGGGAGCAACCTCATCTACACCTAAGACTACGGCCGCGTCTATATGGGA
GCAACCTCATCTACACCTAAGACTACGGCCGCGTCTATGCCGCTCTGCCG
CCACCCCTCGGCAGCCGCTGTCTTCCCTTCCCGGCAACACAGCACGTGGG
CGTGCCCCTACACACGCGCGCCTTGGCCCGGCGCACCCGGAAAGCGGAGG
GCGTCATCCAGTGCCGCGTTGGAGGCCGCTCTGCCGCCACCCCTCGGCAG
CCGCTGTCTTCCCTTCCCGGCAACACAGCACGTGGGCGTGCCCCTACACA
CGCGCGCCTTGGCCCGGCGCACCCGGAAAGCGGAGGGCGTCATCCAGTGC
CGCGTTGGAGGAATCCGATGACGATGAGGACTCCCATTCGTCGGGCAACA
TGTCACACGGGCGTTCGGCTTCAGCGGGAAACCGGTCTGCCCCTTCATGC
TCGCCACGGCCCAGCTCGTACCGCACAACCTACGACACTTCAAAAAGAGG
ACACCGCTGGTTCAACTCGCACCCCCTCGGCGGGGGTCCCGACCTCGAGG
ACTTTCAGACATGGGCGAGGACGATGCTGCGCAGGGGCCTCTGGTGCACA
GAGACGACGCCGACAACAAGTTTCGAAAAAATTCTCCCCAACGCTGGCTT
GATCATTTACGTGCCCGAATCCGATGACGATGAGGACTCCCATTCGTCGG
GCAACATGTCACACGGGCGTTCGGCTTCAGCGGGAAACCGGTCTGCCCCT
TCATGCTCGCCACGGCCCAGCTCGTACCGCACAACCTACGACACTTCAAA
AAGAGGACACCGCTGGTTCAACTCGCACCCCCTCGGCGGGGGTCCCGACC
TCGAGGACTTTCAGACATGGGCGAGGACGATGCTGCGCAGGGGCCTCTGG
TGCACAGAGACGACGCCGACAACAAGTTTCGAAAAAATTCTCCCCAACGC
TGGCTTGATCATTTACGTGCCC
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