mRNA_C-linearis_contig85.16147.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig85.16147.1
Unique NamemRNA_C-linearis_contig85.16147.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig85.16147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig85contigC-linearis_contig85:97165..98782 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.2426221-CDS-C-linearis_contig85:97166..972341622930642.2426221-CDS-C-linearis_contig85:97166..97234Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 97167..97234 -
1690881174.771507-CDS-C-linearis_contig85:97166..972341690881174.771507-CDS-C-linearis_contig85:97166..97234Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 97167..97234 -
1622930642.2595656-CDS-C-linearis_contig85:98658..987821622930642.2595656-CDS-C-linearis_contig85:98658..98782Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 98659..98782 -
1690881174.7849832-CDS-C-linearis_contig85:98658..987821690881174.7849832-CDS-C-linearis_contig85:98658..98782Chordaria linearis ClinC8C monoicousCDSC-linearis_contig85 98659..98782 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig85.16147.1prot_C-linearis_contig85.16147.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig85 97167..98782 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig85.16147.1

>prot_C-linearis_contig85.16147.1 ID=prot_C-linearis_contig85.16147.1|Name=mRNA_C-linearis_contig85.16147.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=64bp
SRFFLSRLALQAHLLISPGVVEHLLRCLDQGRDVAQEVLLRGRIEESKLG
VALASWPRRLRGVG
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mRNA from alignment at C-linearis_contig85:97165..98782-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig85.16147.1 ID=mRNA_C-linearis_contig85.16147.1|Name=mRNA_C-linearis_contig85.16147.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1618bp|location=Sequence derived from alignment at C-linearis_contig85:97165..98782- (Chordaria linearis ClinC8C monoicous)
TCGCGGTTTTTTCTGTCTCGCCTTGCATTGCAGGCTCACCTTCTCATCAG
CCCCGGCGTTGTGGAACACTTATTGCGCTGCTTGGACCAGGGCAGGGACG
TGGCTCAGGAGGTCTTATTGAGAGGTGAGAATTTGCGATGCACGAGGTAC
CTAGATGATAGAGCGCCAGTTGGAAGCAAAGTTCGATCGCGTGTGTGGGG
GGAGCGGGTCACACACGCGCGGAGTGTGTGTTTTCGTCGCTGCTCAGACC
CGTACGTGCTGTTTGACAAACTTCATCTGGGGGGTAGGGGCGGGCGTTTT
GTATCCAATGCTTGCATTGTGGCCGCTGGTTGAGAACTGTAACTGTGAGC
TGCTCTACCTCTTTCCCGCTGTCTCTCTGATGCGGCCTATGATGTGTGCG
CAACCTAGTGGATGGACTGTTTTCTATTTTCAGATTTTCGGTGCTCTTTT
CTCTTTTCTGATGAGAGGTTTGCGTTCGAAGCAAACGCACCCTCCGCATG
TGTGGTAGTTTTAGCCGAGGATGTTGGGTGTGTTGAAGTTGGTGTTGGCA
TTCCCCCGTCTTAGAATCCTCGACGGTAAGGTTGTCACACACGCGGGAGC
CCGTGAGGTACCGTATTCGAGTATTCGACCATTTCGAGCACATAAAGATG
AACCCCCGCACTTTCTCGTGTTCTGGGACCAGATGGCAAGACCATACAGA
GTACAGCAGTATTGGTTTCATCACACGCCGTTCACGTTCAACCTCTCCCC
ACGTTACGACTGCTGCGAAGCATACGACGAACATGAAGCCCTTAAATCCG
CCTCTGCGGTGTTAATGGCCCCGCAGTATCACAGCAGTATTACAAGTGCA
GCGTGTGTGTGCCGAAAGTGCTTCCTCTCGAACTTTTGGGCAGTCTGGCG
GATAAATTGCGAGCCCGTATGTAGGTCGCGGCATGTTCTCGCATACAGCA
GTACCTGCGTGTGTGGGTAGACTACTCTGTAGCGAGCCCGGCTTCCTTCT
CCCACGGGCTGCCCGTAAAGAGGGCCTTGTCTTTTTTCTCTTTCTTACAT
GTCGCTAAAGAAGAGGACATACATTTTGGCCCTCCAGCAGTACTTGTAGT
TCACGTACAGAATAAATTATAAATTACCTCTCACCGGTGTTGGAGGCATC
ACTGACTGACTAATGCTACCTGCTGTTCATTGCGCACTGGTGCAGCAGTA
GCGAGTGCAGCAAGAAAAACAGGGAAGTCAAGCTCATGTGCAGTAGCTTG
CATACAGTAGCTTCCCTCTCGTGCTGCTTGGTTTGCGTTTGTGGCGCAAA
CGCCTGCTGCTGCGACCTCCTCTAGTAGCAGTTTGGCCAGTGTGCACCCT
GCACAAGCAGAGTACTTAGGGTTTGGTTCGTTTTGCCGTATCACGTTGTA
GCTGCTTTGTGTCTATCGAGCGCAGACCTCTAACCAATGCCCGGCCCCCA
ACCATCTGCCCACCCCATCCATCTGCGCATGATGCTCGATGCTAACTTTT
GCTGCACACATCACTCATGTCTCGCGGCTCATGGCTCTTGTCTCACAGGA
AGGATCGAAGAATCCAAGCTCGGTGTTGCGCTGGCTAGCTGGCCAAGGAG
ACTAAGAGGGGTGGGGTG
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Coding sequence (CDS) from alignment at C-linearis_contig85:97165..98782-

>mRNA_C-linearis_contig85.16147.1 ID=mRNA_C-linearis_contig85.16147.1|Name=mRNA_C-linearis_contig85.16147.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at C-linearis_contig85:97165..98782- (Chordaria linearis ClinC8C monoicous)
TCGCGGTTTTTTCTGTCTCGCCTTGCATTGCAGGCTCACCTTCTCATCAG
CCCCGGCGTTGTGGAACACTTATTGCGCTGCTTGGACCAGGGCAGGGACG
TGGCTCAGGAGGTCTTATTGAGAGTCGCGGTTTTTTCTGTCTCGCCTTGC
ATTGCAGGCTCACCTTCTCATCAGCCCCGGCGTTGTGGAACACTTATTGC
GCTGCTTGGACCAGGGCAGGGACGTGGCTCAGGAGGTCTTATTGAGAGGA
AGGATCGAAGAATCCAAGCTCGGTGTTGCGCTGGCTAGCTGGCCAAGGAG
ACTAAGAGGGGTGGGGGAAGGATCGAAGAATCCAAGCTCGGTGTTGCGCT
GGCTAGCTGGCCAAGGAGACTAAGAGGGGTGGGG
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