mRNA_C-linearis_contig84.16138.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16138.1
Unique NamemRNA_C-linearis_contig84.16138.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:765972..768413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930631.252175-CDS-C-linearis_contig84:765971..7660201622930631.252175-CDS-C-linearis_contig84:765971..766020Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 765972..766020 +
1690881168.7380378-CDS-C-linearis_contig84:765971..7660201690881168.7380378-CDS-C-linearis_contig84:765971..766020Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 765972..766020 +
1622930631.2698858-CDS-C-linearis_contig84:768192..7684131622930631.2698858-CDS-C-linearis_contig84:768192..768413Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 768193..768413 +
1690881168.752323-CDS-C-linearis_contig84:768192..7684131690881168.752323-CDS-C-linearis_contig84:768192..768413Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 768193..768413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16138.1prot_C-linearis_contig84.16138.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 765972..768413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16138.1

>prot_C-linearis_contig84.16138.1 ID=prot_C-linearis_contig84.16138.1|Name=mRNA_C-linearis_contig84.16138.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=90bp
GQGVHGLDRGHNRQQQGLGRVPRSHEDPAQRRPPIHVVRPPPSAQRPPRG
SAGGTRNVRQGPDCRRCSGERQSSPAHSIHSGTGPQHIHE
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mRNA from alignment at C-linearis_contig84:765972..768413+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16138.1 ID=mRNA_C-linearis_contig84.16138.1|Name=mRNA_C-linearis_contig84.16138.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2442bp|location=Sequence derived from alignment at C-linearis_contig84:765972..768413+ (Chordaria linearis ClinC8C monoicous)
GGACAAGGCGTTCATGGGCTTGATCGGGGCCACAACCGGCAACAACAAGG
TGAGTCGATTTTCCCTTTGATTGGTTTTTCGTGTCGAACGCCGCGGGCAT
TTCTTCGCAGCCTGGATGCCCTTTTGCTTTGTTTTCCGATCGAAACTGGC
AGTCTGCGTACCGCACTGTGAATTTTTCGTACACTGGCTTGATGACAAGC
GGCTCGCCATCGCGAGACCCCGATACCACTTGGGACAGCGGCAACTCGAT
ACCATCTTTTGGACAGCGGCAATAATTTCCGATCGAAACTGGTCGTCTGC
GGGCCCCGTTGTGAAATCTTCGCACATTTGGACCCCTCACGCAACGGACG
CCACGATTTCACCTGTTTCCAACCAGCGGACCTCACCTAATTTGGGGACG
GCTGCGCCTTCACGTGGCGCAATTTGACTTGCCTCCCTACGCCCGCGAGT
TCATACACCATGTGTACAAGTTGATTCGGGGAAGTGTCGTCCTTTCGTTC
CTGATACACCGGTGACGACGTGAATCCCACATGCACGCGTTGACACGCCA
ACGATGAACCTCATCTCCCACGTAAATAAATGTACTCTGCACACTGTATT
TCGATGATTGAATTCCCGTACCATTTATGTTCATGAGTTCACTTGTTCTC
ACCACGGCCACCACTTCATCACTTGGTTTTACCACGGCCACCATTTCATC
TATTCGGCTATTTAGCTCAGGCGAACCTCTCGTGCACTTGTAGTACACGC
CGTCGATCGATTGGTCGCCCCGTGGAACTCTTTACGTAGCCTCCTACGTC
GCAGAGCACACGACCAAGGGGACGGGTGTAGTTCGTACTACAGCAGCTAG
AGGTCTATCCCCTCCACATACCACATACGCAAGCTTACTGCCCCATGTGC
TTCACGAGTTCAAATATTTTCGCCACGATACGTAAACGAATTTCCGACGA
GGCGCGCCGTGCTAACCGTGCCCACGACAGCGCCCCTCCGCCGACGCGCG
CCACGGTATGCAAACCACCTTCCGACGATACGCGCAAGTGCTATCCGAAC
CCGCTGCGGTGCAAACCAGTCAACATGCTGTGTGCTACTTCGCAATATAC
CACCGAATTTTCGAGTTCCAATATTTTCGCCACGATACGTACACGAAACT
CCGACGATGCGTGCCATGCTAACCGTGCCCACGGCAGCGCCCATCCACCA
ACGCGCGCCACGGTATGCAAACCACCTTCCGACGATCAGCGCACGTGCTA
ACCGAGCCCGCCGCGGTGCAGATCAGTCAACATGCTGTGTGCTACTCCGG
AGTACTTCGCAATATACCACCGAAATTTCGAGTTCCAATATTTTCGCCAC
GATAAGTAAACGAATTTCCGACGATGCGCGCCGTGCTAACCGTGCCCACG
GCAGCGCCCACCCACCGACGCGCGCCACGACGTACAAACGATTTTCCGAC
ATTGCGCGCAGTGCTGTCCGAGCCCACGGCCACGTACACTCGCCGGCAAG
CGGTGGGCTACATCACTGTCGCCAACGTGCCCACGGCAGCGCCCCTCCGC
CGACGCGCGCCACGGCATGCAAACCACCTTCCGATGATACGCGCAAGTGC
TAACCGAGCCCACCGCGGTGCAAACCAGTCAACATGCTGTGTGCTACTTC
GCAATATACCACCGAATTTTCGAGTTCCAATATTTTCGCCACGATACGTA
CACGAATTTCCGACGATGCGCGCCGTGCTAACTGTGCCCACGGCAGCGCC
CACCCGCCGACGCGCGCCACGGTATGAAAACTACCTTCCGACGATACACG
CACGTGCTATCCGAGCCCACTGCGGTATAGACCAATCAACAAGTGGTGTG
CTACTTCGCAATACGCCACCGAATTTTCGTTAGCCCGCGCGGCGCGCACT
GAGCCCGCCGCTCAACGTCGACCCGCCGACACGCCGTCGGTCACGCCACG
ATATGTAAACAAAATCCCGACGATCACGCCACGCTCTGTAAACGAAATTC
TGACGATGCCCGCCGTGCTAACCGTGCCCACGGCGGCGCCCATCCACCAA
CAGAAGCCACGACGTACAAACGATTTCCCGACATTGCGCGCAGTGCTGTC
CGAGCCCACGGCCACGCACACTCGCCGGCAAGCGGTGGGCTACATCATTA
TTTGCCAACGAAATTCCGTCGACCCGCGCCGTGCTAACTGAAACCCTACG
TCTGCGCACGGCTGTCCGCAGGTCTTGGCCGCGTGCCTCGAAGTCACGAA
GACCCTGCGCAACGCCGGCCTCCAATTCACGTGGTCCGACCTCCGCCCAG
CGCTCAGCGTCCTCCACGGGGTTCTGCCGGCGGTACGCGAAACGTCCGCC
AAGGTCCAGATTGTCGTCGATGCAGTGGCGAGAGGCAATCGTCTCCTGCT
CACTCCATTCACAGCGGCACAGGTCCTCAACATATTCACGAA
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Coding sequence (CDS) from alignment at C-linearis_contig84:765972..768413+

>mRNA_C-linearis_contig84.16138.1 ID=mRNA_C-linearis_contig84.16138.1|Name=mRNA_C-linearis_contig84.16138.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at C-linearis_contig84:765972..768413+ (Chordaria linearis ClinC8C monoicous)
GGACAAGGCGTTCATGGGCTTGATCGGGGCCACAACCGGCAACAACAAGG
GACAAGGCGTTCATGGGCTTGATCGGGGCCACAACCGGCAACAACAAGGT
CTTGGCCGCGTGCCTCGAAGTCACGAAGACCCTGCGCAACGCCGGCCTCC
AATTCACGTGGTCCGACCTCCGCCCAGCGCTCAGCGTCCTCCACGGGGTT
CTGCCGGCGGTACGCGAAACGTCCGCCAAGGTCCAGATTGTCGTCGATGC
AGTGGCGAGAGGCAATCGTCTCCTGCTCACTCCATTCACAGCGGCACAGG
TCCTCAACATATTCACGAAGTCTTGGCCGCGTGCCTCGAAGTCACGAAGA
CCCTGCGCAACGCCGGCCTCCAATTCACGTGGTCCGACCTCCGCCCAGCG
CTCAGCGTCCTCCACGGGGTTCTGCCGGCGGTACGCGAAACGTCCGCCAA
GGTCCAGATTGTCGTCGATGCAGTGGCGAGAGGCAATCGTCTCCTGCTCA
CTCCATTCACAGCGGCACAGGTCCTCAACATATTCACGAA
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