mRNA_C-linearis_contig84.16121.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig84.16121.1 vs. uniprot
Match: D8LMR7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR7_ECTSI) HSP 1 Score: 467 bits (1201), Expect = 9.550e-148 Identity = 488/877 (55.64%), Postives = 530/877 (60.43%), Query Frame = 1
Query: 145 SAYGSGDFDEQSKAGASESEYDSREYGFDEDDQSSI-SPTTEDGSATXXXXXXXXXXXXXXXXXXXXXXXERSQEAGNTAVAGVATATGSVDEPNSLSSYADDFADDESIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTQRGAGDQAQHSTAADVSASFHQAASSECNVEENXXXXXXNDI-----GNNQDDSEGVDQLRPSGPGKNSGTDVGGDGGGIINASRTEAFEDDVGRGAPSTAGSSPSVSELKDRLREADLENARLREAMEKSAAARSGGSDDD--KRELEILKGQVEAAKATMLSSLDDGDGKPERTLLELVLLAESRGYKQAEERAEATRAASGEGRXXXXXXXXXXXXXXXXXXXXXXXXXXVKAETVARTELEKRVESLERDLTCAGQESRAQSARAASLQRQLDGGSGGGNXXXXXXXXXXXXXXXXXXXAQGMSGFDDMAEGVATADIMALKIKATQLVERLRQEKATRLKAERKTQKVAGKVQVLSDHIEKLMMFLKHEATQKAKAHEQQRRLQKEVELVKARNTALLRSNQAKDRVTTELREGSKILEDQLRLMDEKYMELRTKLDWTRTKADKDVRRARAHASALRTKWAILSGEGE----SSLLDTMRVDSPNGGGVGAGAGVLNHSSSAPGAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV----------------APFQGRQXXXXXXXXXXXSGTAGIGSNPAP---GGGGGSLKGT---------------LPGYVSGGGAGAGVRGGLPQGGMPFNPGGLSAGTDPGG-LLGESGGSRXXXXXXXXXXXXXXRPPWSEQGGGKGVGGGRHASQQVLYA 2634
SAYGS DFD+QSK A+ESEYDSR+YGF EDD+SS SPTT DGS T + EA N AV G +TATG XXXXXXXXXXXXXXXXX Q+ G+Q+ N G D + G G + D + GG R DD R GS P V+EL++RLR A+LENARLREA E++ AA G +DD K+ELE+LK QVEAA+A MLSSL DG+ KPERTLLELVLLAES+GYKQAE+ XXXXXXXXXXXXXXXXXXXXXX VK E++AR ELEKRVESLERDL AGQESRAQSARAASLQRQLD G GG+ XXXXX G DD+ GVATADIMALK+KATQLVERLR EK+ RLKAERKTQKVAGKVQVLSDHIEKLMMFLKHEATQKAKAHEQQRRLQKE+ELVKAR+TALLRSNQAKDRVTTELREGSKILEDQLRLMDEKYMELRTKLDWTRTKADKDVRRARA ASALRTKWAIL G+GE SSLLDTM+VD G LNHSSSAPG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX P S G + P GGG SLK LPGY GGGA RGG P GG+ GLSAGTDPGG LLG+ G R RPPWSEQGGG+G G AS+++LYA
Sbjct: 52 SAYGSEDFDDQSKCSAAESEYDSRDYGFGEDDRSSTNSPTTADGSQTQTTGTAAE---------------DGEVEARNEAVGGESTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDKPPDAAGVAAAGNVDGNETNRQQERGEQSAXXXXXXXXXXXXXXXXXXXXXXXNSNGGDKGSADTRTAGGKNGDRHRQESASDRGDGMGNDRDATTNPGGARGVVREV---DDKDR----PMGSLPPVTELEERLRRANLENARLREAAEQNIAATPGSADDGGAKKELEVLKHQVEAARAVMLSSLADGEDKPERTLLELVLLAESQGYKQAEKN--------------NXXXXXXXXXXXXXXXXXXXXXXAVKVESIARAELEKRVESLERDLARAGQESRAQSARAASLQRQLDSGGNGGDQSGSGXXXXXGVAGGVGVVVNSGGGLDDVTIGVATADIMALKVKATQLVERLRHEKSARLKAERKTQKVAGKVQVLSDHIEKLMMFLKHEATQKAKAHEQQRRLQKELELVKARSTALLRSNQAKDRVTTELREGSKILEDQLRLMDEKYMELRTKLDWTRTKADKDVRRARAQASALRTKWAILCGDGEGGGGSSLLDTMQVDVAPG-------PHLNHSSSAPGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGVPLSRGGQDPLAPSTSDPSLLRGQQTRPQRSGFGGGNSSLKMVGAGXXXGKFKNAAVPLPGYAGGGGA---ARGGSPPGGLSA---GLSAGTDPGGELLGDMGTGRGGTGGGGQ------RPPWSEQGGGRGAGD--IASKKILYA 871
BLAST of mRNA_C-linearis_contig84.16121.1 vs. uniprot
Match: A0A835YJ85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ85_9STRA) HSP 1 Score: 153 bits (387), Expect = 2.520e-37 Identity = 92/154 (59.74%), Postives = 112/154 (72.73%), Query Frame = 1
Query: 1528 TADIMALKIKATQLVERLRQEKATRLKAERKTQKVAGKVQVLSDHIEKLMMFLKHEATQKAKAHEQQRRLQKEVELVKARNTALLRSNQAKDRVTTELREGSKILEDQLRLMDEKYMELRTKLDWTRTKADKDVRRARAHASALRTKWAILSGE 1989
T DI AL+ + QLVE LRQEK RL+A + ++ AG V+ LS+H+EKLM +LKHEA KA+AHEQQ RLQKEVEL++AR AL R AK R +ELREGSKILEDQLRLMD KY+ELR KLD TR +A ++V A+ + LR KW LS E
Sbjct: 30 TGDIAALRSRCLQLVEALRQEKGRRLRAVGEGERQAGHVRALSEHVEKLMAYLKHEAAAKARAHEQQLRLQKEVELLRARGAALERKAAAKSRAISELREGSKILEDQLRLMDAKYVELRGKLDRTRARAAREVGAAKRDCTRLRVKWTTLSRE 183
BLAST of mRNA_C-linearis_contig84.16121.1 vs. uniprot
Match: A0A7S1UHS9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UHS9_9STRA) HSP 1 Score: 152 bits (385), Expect = 3.260e-35 Identity = 97/171 (56.73%), Postives = 122/171 (71.35%), Query Frame = 1
Query: 1516 EGVATADIM-ALKIKATQLVERLRQEKATRLKAERKTQKVAGKVQVLSDHIEKLMMFLKHEATQKAKAHEQQRRLQKEVELVKARNTALLRSNQAKDRVTTELREGSKILEDQLRLMDEKYMELRTKLDWTRTKADKDVRRARAHASALRTKWAILS-GEGESSLLDTMRV 2022
E TAD M AL+++AT L R RQEK + +AE + KV LSDHIEKLM+ LKHEA KAKA E QRR Q+E L++ RN AL++ N A++RV E++EGSKILEDQLRLMDEKY+ELR KLDWTR KA ++V++ +A AS LR ++A+L GEG LLD RV
Sbjct: 286 EDQGTADDMKALRMRATHLASRHRQEKEAKYRAEDALRSSNKKVAALSDHIEKLMLHLKHEAASKAKAFELQRRAQRETTLLRKRNQALVKRNTARERVILEMQEGSKILEDQLRLMDEKYLELRVKLDWTRNKATQEVKKFKAEASNLRARFALLHPGEG---LLDDARV 453
BLAST of mRNA_C-linearis_contig84.16121.1 vs. uniprot
Match: A0A7S2B9G0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B9G0_9STRA) HSP 1 Score: 144 bits (362), Expect = 1.760e-34 Identity = 95/181 (52.49%), Postives = 118/181 (65.19%), Query Frame = 1
Query: 1525 ATADIMALKIKATQLVERLRQEKATRLKAERKTQKVAGKVQVLSDHIEKLMMFLKHEATQKAKAHEQQRRLQKEVELVKARNTALLRSNQAKDRVTTELREGSKILEDQLRLMDEKYMELRTKLDWTRTKADKDVRRARAHASALRTKWAILSGEGESSLLDTMRV--DSPNGGGVGAGAG 2061
A+ D+ LK KA L+ER + EK RL+AE T+ KV LS HIEKLM+ LKHEA KAKAHE R +EV L++ARN AL + ++D + EL EG+KILEDQLRLMDEKYMELRTKLD+TR K+V + +A AS+LR KWA S LLD + + SP G G+ AG
Sbjct: 44 ASDDLTLLKAKAMSLLERQKNEKELRLRAEAATKASNKKVLALSQHIEKLMLHLKHEAASKAKAHEAAGRAAQEVSLLRARNAALGKRAASRDSIIKELTEGAKILEDQLRLMDEKYMELRTKLDFTRMTTGKEVTKYKALASSLRAKWAAYSNN--QGLLDELEMPQQSPTGSQTGSWAG 222
BLAST of mRNA_C-linearis_contig84.16121.1 vs. uniprot
Match: A0A7S2RYH1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYH1_9STRA) HSP 1 Score: 137 bits (344), Expect = 9.030e-33 Identity = 88/164 (53.66%), Postives = 111/164 (67.68%), Query Frame = 1
Query: 1564 QLVERLRQEKATRLKAERKTQKVAGKVQVLSDHIEKLMMFLKHEATQKAKAHEQQRRLQKEVELVKARNTALLRSNQAKDRVTTELREGSKILEDQLRLMDEKYMELRTKLDWTRTKADKDVRRARAHASALRTKWAILSGEGES--SLLDTMRVDSPNGGGVG 2049
QL+ER + EK +RL+AE T+ K+ LS HIE+LM+ LKHEA KAKAHE R +EV L++ RN L + A+D+V ELREG+KILEDQLRLMDEKYMELRTKLD+TR + K+V + + AS LR KWA+LS +LLD M V + GG G
Sbjct: 1 QLLERQKAEKESRLRAEAATKLANKKILALSQHIERLMLHLKHEAASKAKAHEAAGRATQEVSLLRQRNGVLTKRAGARDQVIVELREGAKILEDQLRLMDEKYMELRTKLDYTRQASTKEVNKYKQQASHLRAKWALLSNAPGHVPTLLDEMPVPMGDTGGGG 164
BLAST of mRNA_C-linearis_contig84.16121.1 vs. uniprot
Match: A0A8J2SP64_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SP64_9STRA) HSP 1 Score: 139 bits (350), Expect = 4.150e-31 Identity = 81/166 (48.80%), Postives = 113/166 (68.07%), Query Frame = 1
Query: 1534 DIMALKIKATQLVERLRQEKATRLKAERKTQKVAGKVQVLSDHIEKLMMFLKHEATQKAKAHEQQRRLQKEVELVKARNTALLRSNQAKDRVTTELREGSKILEDQLRLMDEKYMELRTKLDWTRTKADKDVRRARAHASALRTKWAILSGEGESSLLDTMRVDSP 2031
D+ ALK KAT+L+ R + EK R KAE + + KV LSDH+EKLM+ LKHE KA+ +Q RR +K+++ K R+ L R N A+++ EL+EGSKILEDQL+LMD +Y+ELR KLDWTR A+ V+RA+ AS LR KWA+ + + LLD +++ +P
Sbjct: 320 DVRALKHKATELLARGKAEKDQRQKAEAEAKLTGKKVAALSDHVEKLMVHLKHEVGAKAQVTDQLRRAEKDLDTAKLRSRTLARRNNAREKFVLELKEGSKILEDQLKLMDRRYLELRAKLDWTRQHAETQVKRAKKAASTLRAKWALATNSSQ-GLLDEVQLPAP 484
BLAST of mRNA_C-linearis_contig84.16121.1 vs. uniprot
Match: A0A812Y6I0_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Y6I0_SYMMI) HSP 1 Score: 135 bits (341), Expect = 5.130e-31 Identity = 88/162 (54.32%), Postives = 109/162 (67.28%), Query Frame = 1
Query: 1525 ATADIMALKIKATQLVERLRQEKATRLKAERKTQKVAGKVQVLSDHIEKLMMFLKHEATQKAKAHEQQRRLQKEVELVKARNTALLRSNQAKDRVTTELREGSKILEDQLRLMDEKYMELRTKLDWTRTKADKDVRRARAHASALRTKWAILSGEGESSLLD 2010
A DI ALK KA LVER+RQEK +L+ E + ++ A K+++LSDH+EKLM+ LKHEA K KA +Q R +K V+ + R AKDR+ ELREGSKILEDQLRLMDEKY+ELRTKLD+ R A K VR A+ AS LR K+A+ G LLD
Sbjct: 201 AAEDIRALKAKAISLVERIRQEKEDKLRIEGEQKQYAKKIEMLSDHVEKLMIHLKHEAAAKIKAVDQLRASEKRNRAVQDNLDLVSRKAAAKDRLIAELREGSKILEDQLRLMDEKYLELRTKLDYAREMAAKKVRNAQKTASELRVKFALA---GNQKLLD 359
BLAST of mRNA_C-linearis_contig84.16121.1 vs. uniprot
Match: A0A7S2DJE2_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DJE2_9STRA) HSP 1 Score: 131 bits (329), Expect = 1.200e-30 Identity = 82/159 (51.57%), Postives = 108/159 (67.92%), Query Frame = 1
Query: 1534 DIMALKIKATQLVERLRQEKATRLKAERKTQKVAGKVQVLSDHIEKLMMFLKHEATQKAKAHEQQRRLQKEVELVKARNTALLRSNQAKDRVTTELREGSKILEDQLRLMDEKYMELRTKLDWTRTKADKDVRRARAHASALRTKWAILSGEGESSLLD 2010
D++ LK + LV+R RQEK R +AE T+ KV +LS H+EKLM+ LKHEA KAKA E R +EV L++ RN AL + +KD + EL EG+KILEDQLRLMDEKYME+RTKLD+TRT + ++V + + +S LR KWA S ++LLD
Sbjct: 14 DLLNLKGRQAALVDRQRQEKENRSRAEAATKNAIKKVVLLSQHVEKLMLHLKHEAVSKAKAQEAAGRAAQEVSLMRTRNKALNKRAASKDVMIRELSEGAKILEDQLRLMDEKYMEIRTKLDFTRTTSTREVAKHKQESSVLRAKWAQYSNS--TTLLD 170
BLAST of mRNA_C-linearis_contig84.16121.1 vs. uniprot
Match: K3X8M5_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8M5_GLOUD) HSP 1 Score: 123 bits (308), Expect = 3.380e-25 Identity = 72/149 (48.32%), Postives = 100/149 (67.11%), Query Frame = 1
Query: 1546 LKIKATQLVERLRQEKATRLKAERKTQKVAGKVQVLSDHIEKLMMFLKHEATQKAKAHEQQRRLQKEVELVKARNTALLRSNQAKDRVTTELREGSKILEDQLRLMDEKYMELRTKLDWTRTKADKDVRRARAHASALRTKWAILSGEG 1992
LK+K + R R EK +R K E ++ + K+ VLS+HIEKLM+ LKHEA K KA + QRRL+KE+ K ++T L + N AKD+ L +G+KILEDQLRLMDEK++++R KLDWTR + K+V++ + S LR KW + S G
Sbjct: 443 LKVKMVDVASRERVEKESRQKCEANYKESSEKIVVLSEHIEKLMVHLKHEAAAKTKAVDAQRRLEKELAECKDKSTVLQKKNTAKDQQIQVLEQGAKILEDQLRLMDEKFIDVRNKLDWTRATSQKEVKKLNSELSVLRMKWQLASDAG 591
BLAST of mRNA_C-linearis_contig84.16121.1 vs. uniprot
Match: A0A5D6Y1X9_9STRA (JmjC domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y1X9_9STRA) HSP 1 Score: 124 bits (310), Expect = 3.850e-25 Identity = 73/153 (47.71%), Postives = 102/153 (66.67%), Query Frame = 1
Query: 1534 DIMALKIKATQLVERLRQEKATRLKAERKTQKVAGKVQVLSDHIEKLMMFLKHEATQKAKAHEQQRRLQKEVELVKARNTALLRSNQAKDRVTTELREGSKILEDQLRLMDEKYMELRTKLDWTRTKADKDVRRARAHASALRTKWAILSGEG 1992
+ ALK KA +L R R EK R K+E + + K+ LS+HIEK+M+ LKHEA KAKA + QRRL++E+ K ++ AL + + AKD EL +G++ILEDQLRLMDEK++++R KLDWTR + K+V++ SALR KW + S G
Sbjct: 812 EFQALKEKAVELASRERVEKELRQKSESGLSEASAKIVALSEHIEKVMVHLKHEAAAKAKAVDAQRRLERELAECKDKSAALQKRSAAKDAELQELEQGARILEDQLRLMDEKFIDVRNKLDWTRATSQKEVKKLAGELSALRMKWQLASDAG 964 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig84.16121.1 >prot_C-linearis_contig84.16121.1 ID=prot_C-linearis_contig84.16121.1|Name=mRNA_C-linearis_contig84.16121.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=879bp MEQDPPNAVTSEDDGGGDGGGSVGKVKSNQSSNQEEEEEEEEEGEREDSAback to top mRNA from alignment at C-linearis_contig84:594592..599096+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig84.16121.1 ID=mRNA_C-linearis_contig84.16121.1|Name=mRNA_C-linearis_contig84.16121.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4505bp|location=Sequence derived from alignment at C-linearis_contig84:594592..599096+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig84:594592..599096+ >mRNA_C-linearis_contig84.16121.1 ID=mRNA_C-linearis_contig84.16121.1|Name=mRNA_C-linearis_contig84.16121.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5274bp|location=Sequence derived from alignment at C-linearis_contig84:594592..599096+ (Chordaria linearis ClinC8C monoicous)back to top |