mRNA_C-linearis_contig84.16119.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16119.1
Unique NamemRNA_C-linearis_contig84.16119.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:578553..579081 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size529
Cds size366
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16119.1prot_C-linearis_contig84.16119.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 578701..579066 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930631.3457422-UTR-C-linearis_contig84:578552..5787001622930631.3457422-UTR-C-linearis_contig84:578552..578700Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 578553..578700 +
1690881168.7770379-UTR-C-linearis_contig84:578552..5787001690881168.7770379-UTR-C-linearis_contig84:578552..578700Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 578553..578700 +
1622930631.3805525-UTR-C-linearis_contig84:579066..5790811622930631.3805525-UTR-C-linearis_contig84:579066..579081Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 579067..579081 +
1690881168.8017724-UTR-C-linearis_contig84:579066..5790811690881168.8017724-UTR-C-linearis_contig84:579066..579081Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 579067..579081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930631.3626602-CDS-C-linearis_contig84:578700..5790661622930631.3626602-CDS-C-linearis_contig84:578700..579066Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 578701..579066 +
1690881168.7912035-CDS-C-linearis_contig84:578700..5790661690881168.7912035-CDS-C-linearis_contig84:578700..579066Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 578701..579066 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16119.1

>prot_C-linearis_contig84.16119.1 ID=prot_C-linearis_contig84.16119.1|Name=mRNA_C-linearis_contig84.16119.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=122bp
MGAHSTPIFPRLWAARCALLLHCCTWTHREKGKLPFRGPPTHEIESIYEI
EQGGGTQNLTLTLTLTPKHGFNTLSHTFSEGEKAAKATAFRPLVVPTHIL
PRLLRLPRGSIGYLYHTKKTA*
back to top

mRNA from alignment at C-linearis_contig84:578553..579081+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16119.1 ID=mRNA_C-linearis_contig84.16119.1|Name=mRNA_C-linearis_contig84.16119.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=529bp|location=Sequence derived from alignment at C-linearis_contig84:578553..579081+ (Chordaria linearis ClinC8C monoicous)
TTGCGGGTTTGACGCTAAAATTACTTTCATGAAGGCGGCAAAGCGGCAAC
AATCATCCCGCCTTACTTGACTCGAAAACAATGTACACGTAAGACCCAGC
CGCTAAATACTTGTAGAACGTGGACCAAAAACTGACCGTTCTCGGGGTAT
GGGGGCACACAGCACGCCCATCTTTCCGAGACTCTGGGCCGCTCGATGTG
CACTGCTGTTGCATTGTTGCACGTGGACACACCGAGAAAAAGGAAAGCTC
CCTTTTCGCGGGCCGCCTACGCACGAAATTGAGAGTATCTACGAAATAGA
ACAGGGAGGGGGTACGCAGAACCTAACCCTAACCCTAACCCTAACCCCAA
AGCACGGATTCAATACTTTATCCCATACGTTTTCTGAAGGAGAAAAAGCT
GCGAAGGCTACTGCTTTTCGCCCTTTGGTCGTCCCGACCCATATCCTGCC
ACGCCTCTTACGTTTGCCGAGAGGATCGATAGGCTATCTATACCACACGA
AAAAAACAGCATAAATTATACCACGGACT
back to top

Coding sequence (CDS) from alignment at C-linearis_contig84:578553..579081+

>mRNA_C-linearis_contig84.16119.1 ID=mRNA_C-linearis_contig84.16119.1|Name=mRNA_C-linearis_contig84.16119.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at C-linearis_contig84:578553..579081+ (Chordaria linearis ClinC8C monoicous)
ATGGGGGCACACAGCACGCCCATCTTTCCGAGACTCTGGGCCGCTCGATG
TGCACTGCTGTTGCATTGTTGCACGTGGACACACCGAGAAAAAGGAAAGC
TCCCTTTTCGCGGGCCGCCTACGCACGAAATTGAGAGTATCTACGAAATA
GAACAGGGAGGGGGTACGCAGAACCTAACCCTAACCCTAACCCTAACCCC
AAAGCACGGATTCAATACTTTATCCCATACGTTTTCTGAAGGAGAAAAAG
CTGCGAAGGCTACTGCTTTTCGCCCTTTGGTCGTCCCGACCCATATCCTG
CCACGCCTCTTACGTTTGCCGAGAGGATCGATAGGCTATCTATACCACAC
GAAAAAAACAGCATAAATGGGGGCACACAGCACGCCCATCTTTCCGAGAC
TCTGGGCCGCTCGATGTGCACTGCTGTTGCATTGTTGCACGTGGACACAC
CGAGAAAAAGGAAAGCTCCCTTTTCGCGGGCCGCCTACGCACGAAATTGA
GAGTATCTACGAAATAGAACAGGGAGGGGGTACGCAGAACCTAACCCTAA
CCCTAACCCTAACCCCAAAGCACGGATTCAATACTTTATCCCATACGTTT
TCTGAAGGAGAAAAAGCTGCGAAGGCTACTGCTTTTCGCCCTTTGGTCGT
CCCGACCCATATCCTGCCACGCCTCTTACGTTTGCCGAGAGGATCGATAG
GCTATCTATACCACACGAAAAAAACAGCATAA
back to top