mRNA_C-linearis_contig84.16117.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: D8LMR3_ECTSI (Oxidoreductase, short chain dehydrogenase/reductase family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR3_ECTSI) HSP 1 Score: 457 bits (1175), Expect = 9.940e-156 Identity = 243/323 (75.23%), Postives = 263/323 (81.42%), Query Frame = 1
Query: 70 MLRFLLVCPTLCRGFLLARQQLSXXXXXXXXXRQHFGTTTSMSG---GRLADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRAPDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSFA 1029
ML F+LVCPTLC FL R+ LS G TT MS GRLADKVYLVTGSTDGIGKHTASRLAEEGA V+VHGRRE+AV+EAVE + G GKG +VEG+VA+LSSLRG NHLCDEVL TD LDCLLNNAG ADFRHSDDGLEYTFAVNVLAPYVITGRLLDL+AKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHA+YSLSKLLDIMFNAELARRAP G+TCNSLDPGTVNTKMLRAGWGMGGIP+KSANDQFYLATSDDV+ ++GEY EAC RLW+VLE+LSG+S+A
Sbjct: 8 MLSFVLVCPTLCSAFLCTRRSLSSLDV---------GRTTKMSAAVTGRLADKVYLVTGSTDGIGKHTASRLAEEGATVLVHGRRESAVREAVEHV-GGGKG-KVEGIVADLSSLRGANHLCDEVLRLTDRLDCLLNNAGV----FEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARRAPKGITCNSLDPGTVNTKMLRAGWGMGGIPVKSANDQFYLATSDDVTDSSGEYXXXXXXXXXXXXXXXXEACRRLWRVLEELSGFSYA 315
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A6V2U0S1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2U0S1_HETAK) HSP 1 Score: 253 bits (647), Expect = 3.740e-76 Identity = 133/273 (48.72%), Postives = 182/273 (66.67%), Query Frame = 1
Query: 214 DKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRAPDGV--TCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSF 1026
+K+++VTGSTDGIG+HT+ +LAE GARVIVHGR +E V+ +K ++++ VA+LS ++ L D++ + +DCL+NNAG F+ + DG E TFAVNV AP+V+T RLL ++ K PG R++ V+S+S +DF+NLQFEKGGY +H++YSLSKL D M E+A R G T N+LDPGTVNTKML AGWGM GIP+ AN++F+LATS DV G G+Y+ S R A D EA RLW+ LE +G ++
Sbjct: 60 EKIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVADLSETSNVHTLADQICEKYSHIDCLINNAGV----FEEQFQTTPDGFEMTFAVNVAAPFVLTKRLLPMLQKRPGS-RLIIVSSISQGSRIDFENLQFEKGGYDEHSSYSLSKLCDAMLAFEMAARFGSGAQPTVNTLDPGTVNTKMLLAGWGMCGIPVTRANNEFWLATSPDVEGVNGKYFTSCRESRASQVAYDPEARRRLWEYLERTTGVTY 327
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A7S2V5E2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5E2_9STRA) HSP 1 Score: 244 bits (623), Expect = 3.190e-72 Identity = 140/290 (48.28%), Postives = 190/290 (65.52%), Query Frame = 1
Query: 190 SMSGGRLADKVYLVTGSTDGIGKHTASRLAEEGA----RVIVHGRRETAVKEAVELLKGK-----GKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARR--APDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSF 1026
S + G KVYLVTGSTDGIG+HT RLA A V+VHGR AV+ ++ K G G RVE +VA++S++RG+ L ++ AR LDCL+NNAG ++ ++D LE TFAVNV+APY++T LLDL+ G R++NV+S+S Y ++FDNLQF+ GGYSDHAAYSLSKLL +M++ E A R +PD +T NSLDPGTVNTKML AGWG GI + A+++F+LATSD V G G Y+V + + A D +L+++LE ++G S+
Sbjct: 73 SSANGGGGGKVYLVTGSTDGIGRHTCGRLAALAADGDSTVVVHGRDPARCALAVDWVREKSLSAGGGGCRVESIVADISTIRGVASLANQFKARFGRLDCLINNAGV----FEQSYQLTEDNLEMTFAVNVMAPYLLTFLLLDLMLPHKGS-RIINVSSISQGYDVNFDNLQFQNGGYSDHAAYSLSKLLMVMYSLESAERIGSPD-LTINSLDPGTVNTKMLYAGWGACGIDVSRADNEFWLATSDQVEGINGRYFVGKGDSSASRAAYDSTNRSKLFEILEGITGVSY 356
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A7S1HEF3_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEF3_HEMAN) HSP 1 Score: 243 bits (619), Expect = 3.310e-72 Identity = 133/282 (47.16%), Postives = 187/282 (66.31%), Query Frame = 1
Query: 193 MSGGRLADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARR---APDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSFA 1029
MSGG + K+ LVTGSTDGIG+HTA++LA++G +V++HGR + + V+ +K K G ++ +A+ +SL + L E+ A+ +D L+NNAG + + + + DG E TF VNVLAP+++T +LDLV K+ G +++ V+S+S SY+LDFDNLQ +KG +SDH++YSLSKL + M ELA R A GVT N+LDPGTVNTKML AGWGM GI + AN Q LAT + G TG+Y+V R PP D E RLWK++ DL+G ++
Sbjct: 38 MSGGDGSKKIALVTGSTDGIGQHTATKLAQDGFKVLIHGRSQKRIDATVQRIKDKAPGCELDTFLADFASLEDVRKLSKELHAKCPRIDLLINNAGVFSQSM----QKTVDGNEMTFQVNVLAPFLLTSLVLDLVKKSEKG-KIIIVSSISQSYALDFDNLQMQKG-FSDHSSYSLSKLCNAMHAIELAERLKGALPGVTVNTLDPGTVNTKMLEAGWGMCGIDLSRANYQHTLATDPSLDGETGQYFVGGRNTKASPPCYDTEQRQRLWKIMTDLTGADYS 313
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A2P6TE58_CHLSO (Short chain dehydrogenase reductase family n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TE58_CHLSO) HSP 1 Score: 229 bits (584), Expect = 1.430e-67 Identity = 134/276 (48.55%), Postives = 177/276 (64.13%), Query Frame = 1
Query: 208 LADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQR---VEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELA---RRAPDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSG 1017
L K + VTG+TDGIG HTA RLA +GA V+VHGR V++AV ++ G G G VA+L+SL + L +EV A + S+D L+NNAG R S+DG E T+AVNV AP+++T LL+ V + RVV V+S+SA+ S+D+ NLQ E+G +S H AYSLSKL + +F ELA R A VTCN LDPGTVNTKML AGWG GIP+K AN + AT ++GT+GEY+V R+ PP A D+ RLW++LE+ +G
Sbjct: 5 LLGKTFFVTGATDGIGAHTAQRLAAQGATVLVHGRNPGRVEQAVAAVERAGSGSGGAPPRGFVADLASLAQVRRLAEEVAASSPSVDVLINNAGV----FEQQLRKSEDGFELTWAVNVAAPFLLTACLLEAVRE-----RVVVVSSISAASSIDWGNLQQERG-FSAHNAYSLSKLAEQLFTFELADRLRAAGSPVTCNCLDPGTVNTKMLSAGWGSIGIPVKEANYELKAATDPALAGTSGEYFVGGRIARPPSIARDKAEQQRLWRLLEEQTG 270
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A835YNH2_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH2_9STRA) HSP 1 Score: 225 bits (573), Expect = 6.790e-66 Identity = 127/277 (45.85%), Postives = 176/277 (63.54%), Query Frame = 1
Query: 208 LADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGG---YSDHAAYSLSKLLDIMFNAELARR-APDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSF 1026
LA K+ LVTGSTDGIG+HTA++LA +GA V+VHGR + + +AVE +K + +V G++A++S+L GM L V T LD L++NAG + R ++DG E FA NVLAP+V TG LL L+ +A RV+ V+S+S Y+ + QFE+ G +SDH +YSLSKL D M + E R A +T N+LDPGTVNTKML AGWGM GI + ANDQ+ LATS+++ G +G+Y++S R P D A +LW +SG+ +
Sbjct: 8 LAGKIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGI----FESCRRTTEDGTELVFATNVLAPFVTTGLLLPLL-RASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 279
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A5J4XR04_9CHLO (Short chain dehydrogenase reductase family n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XR04_9CHLO) HSP 1 Score: 222 bits (566), Expect = 5.360e-65 Identity = 127/281 (45.20%), Postives = 174/281 (61.92%), Query Frame = 1
Query: 193 MSGGRLADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAG--KRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRA-PDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSF 1026
M G ++ K YLVTGSTDGIG+HTAS+L GA V++HGR + V L KG ++ L+S + + + A +++D L+NNAG + R L S+DG E T+A+NVLAP+++T L D+V R+VNV+S+SA S+DFDNLQ EKG +S H +YSLSKL +MF +LA P GVT N LDPGTVNTKML AGWG GI +K AN ++ LAT ++ TG+YYV+ R P A+D++ RLW+++ D +G F
Sbjct: 1 MQHGEVSGKTYLVTGSTDGIGRHTASKLVAAGANVLLHGRTQEKVTATKRDLDSIAKGNKISSYTYNLASFSQIRKFAEAIRANHNNIDVLINNAGVFETQRSL------SEDGYEMTWAINVLAPFLLTSLLKDVVTD-----RIVNVSSISAGSSIDFDNLQQEKG-FSSHNSYSLSKLASMMFTCDLAEHMKPKGVTVNCLDPGTVNTKMLIAGWGACGIDVKDANYEYKLATDPSLAKETGKYYVNGRESRLPAVAKDQKFRKRLWQIMTDQTGAIF 269
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A061S8W3_9CHLO (Short chain dehydrogenase reductase family n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8W3_9CHLO) HSP 1 Score: 221 bits (564), Expect = 1.200e-64 Identity = 135/274 (49.27%), Postives = 174/274 (63.50%), Query Frame = 1
Query: 217 KVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQ-RVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAG--KRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRAPDG-VTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSF 1026
KV+LVTGSTDGIG HTA LA G VIVHGR E V++AV ++ +G +V + SSL+ + L D+V ++D L+NNAG K G+ L S DG E T+AVNVLAP+V+T L ++V RVVN AS+SA +S+D DNL EKG +S H AYSLSKLLDI+ ELA R + T N+LDPGTVNTKML AGWG GIP++SA D+FY++TS D+ G +GEY+V +R P A D LW++ E +G F
Sbjct: 13 KVFLVTGSTDGIGLHTAKLLAAGGGSVIVHGRNELRVRDAVAEVERVARGNGKVASYTRDFSSLQEVKRLGDDVKRDFATIDVLVNNAGVYKEGKEL------SQDGFEMTYAVNVLAPFVLTSALHNIVTS-----RVVNTASISAGHSVDLDNLNQEKG-FSSHNAYSLSKLLDIILTFELAERLKEKPFTVNTLDPGTVNTKMLLAGWGPIGIPVESA-DEFYVSTSPDLEGVSGEYFVGKRRTRAPAAAYDRGLRETLWRLWEQQTGVRF 273
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A7S0QHA5_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHA5_9CRYP) HSP 1 Score: 219 bits (558), Expect = 6.770e-63 Identity = 128/280 (45.71%), Postives = 172/280 (61.43%), Query Frame = 1
Query: 184 TTSMSGGRLADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELAR---RAPDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLS 1014
+++ G L K LVTG+TDGIG HTA++LA G V++HGR ++EA+ ++ VE A+ SSLR ++ EVL + LD L+NNAG + + R ++DG E TF VNVLAP+++T LL +VAKA G RV+ V+S+S S +D+DNLQ EKG +S H +YSLSKL + M ELAR R V+ N+LDPGTVNTKML AGWG G+ + AND+F LAT G +G+Y+V R P D AC LW+ LE L+
Sbjct: 55 SSAEGGPALGQKTALVTGATDGIGLHTATKLANAGYFVLIHGRDPVRIQEALRKIRLSNPKAGVESFQADFSSLRDVSRFASEVLEQYQCLDLLINNAGVFSQQM----RTTEDGNEMTFQVNVLAPFLLTKALLPIVAKAQAG-RVIIVSSISQSSRIDWDNLQMEKG-FSSHESYSLSKLCNAMHALELARATARTAPHVSVNTLDPGTVNTKMLLAGWGYCGMEVADANDEFLLATDPRFEGVSGKYFVGGRERQAAAPCYDAAACAELWRRLEALT 328
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A7S4DEJ2_9EUKA (Hypothetical protein n=4 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DEJ2_9EUKA) HSP 1 Score: 218 bits (555), Expect = 2.550e-62 Identity = 130/280 (46.43%), Postives = 171/280 (61.07%), Query Frame = 1
Query: 190 SMSGGRLADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRAPD-GVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSF 1026
S GG L K VTGSTDGIG+HTA RLA EG +V++HGR + + +A+ ++ +EG +A+ SL + L + V + ++ L+NNAG + R + DG E T+ VNV+AP+++T LL + K+P G RV+ V+S+S S SLDFDNLQ +KG YS H AYS+SKL D M ELA + GVT N+LDPGTVNTKML GWG GI + ANDQF+LATS ++ T+G YYV R T A RLW+ LED G F
Sbjct: 77 SGGGGALEGKTAFVTGSTDGIGQHTARRLAAEGCKVVLHGRSQQRLDKAISEIRRTTNNPNIEGYLADFESLDEIRKLGETVRSDHPCINILINNAGV----FNPKNRKTKDGYETTWQVNVMAPFLLTHALLPNLKKSPKG-RVIIVSSISQSSSLDFDNLQQQKG-YSAHNAYSISKLADAMIAYELADKLQGTGVTVNTLDPGTVNTKMLLEGWGPCGISVSDANDQFWLATSPELENTSGRYYVYRNERTSSRFAHTPANRQRLWRELEDSCGIRF 350 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig84.16117.1 >prot_C-linearis_contig84.16117.1 ID=prot_C-linearis_contig84.16117.1|Name=mRNA_C-linearis_contig84.16117.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=325bp MNTSMLRFLLVCPTLCRGFLLARQQLSSSSSSLSSSRQHFGTTTSMSGGRback to top mRNA from alignment at C-linearis_contig84:564185..567717- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig84.16117.1 ID=mRNA_C-linearis_contig84.16117.1|Name=mRNA_C-linearis_contig84.16117.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3533bp|location=Sequence derived from alignment at C-linearis_contig84:564185..567717- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig84:564185..567717- >mRNA_C-linearis_contig84.16117.1 ID=mRNA_C-linearis_contig84.16117.1|Name=mRNA_C-linearis_contig84.16117.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at C-linearis_contig84:564185..567717- (Chordaria linearis ClinC8C monoicous)back to top |