mRNA_C-linearis_contig84.16117.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16117.1
Unique NamemRNA_C-linearis_contig84.16117.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: D8LMR3_ECTSI (Oxidoreductase, short chain dehydrogenase/reductase family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMR3_ECTSI)

HSP 1 Score: 457 bits (1175), Expect = 9.940e-156
Identity = 243/323 (75.23%), Postives = 263/323 (81.42%), Query Frame = 1
Query:   70 MLRFLLVCPTLCRGFLLARQQLSXXXXXXXXXRQHFGTTTSMSG---GRLADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRAPDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSFA 1029
            ML F+LVCPTLC  FL  R+ LS             G TT MS    GRLADKVYLVTGSTDGIGKHTASRLAEEGA V+VHGRRE+AV+EAVE + G GKG +VEG+VA+LSSLRG NHLCDEVL  TD LDCLLNNAG       ADFRHSDDGLEYTFAVNVLAPYVITGRLLDL+AKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHA+YSLSKLLDIMFNAELARRAP G+TCNSLDPGTVNTKMLRAGWGMGGIP+KSANDQFYLATSDDV+ ++GEY                EAC RLW+VLE+LSG+S+A
Sbjct:    8 MLSFVLVCPTLCSAFLCTRRSLSSLDV---------GRTTKMSAAVTGRLADKVYLVTGSTDGIGKHTASRLAEEGATVLVHGRRESAVREAVEHV-GGGKG-KVEGIVADLSSLRGANHLCDEVLRLTDRLDCLLNNAGV----FEADFRHSDDGLEYTFAVNVLAPYVITGRLLDLLAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHASYSLSKLLDIMFNAELARRAPKGITCNSLDPGTVNTKMLRAGWGMGGIPVKSANDQFYLATSDDVTDSSGEYXXXXXXXXXXXXXXXXEACRRLWRVLEELSGFSYA 315          
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A6V2U0S1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2U0S1_HETAK)

HSP 1 Score: 253 bits (647), Expect = 3.740e-76
Identity = 133/273 (48.72%), Postives = 182/273 (66.67%), Query Frame = 1
Query:  214 DKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRAPDGV--TCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSF 1026
            +K+++VTGSTDGIG+HT+ +LAE GARVIVHGR     +E V+ +K     ++++  VA+LS    ++ L D++  +   +DCL+NNAG         F+ + DG E TFAVNV AP+V+T RLL ++ K PG  R++ V+S+S    +DF+NLQFEKGGY +H++YSLSKL D M   E+A R   G   T N+LDPGTVNTKML AGWGM GIP+  AN++F+LATS DV G  G+Y+ S R       A D EA  RLW+ LE  +G ++
Sbjct:   60 EKIFVVTGSTDGIGRHTSKKLAETGARVIVHGRNTARCEETVQWIKDITGNEKIDYFVADLSETSNVHTLADQICEKYSHIDCLINNAGV----FEEQFQTTPDGFEMTFAVNVAAPFVLTKRLLPMLQKRPGS-RLIIVSSISQGSRIDFENLQFEKGGYDEHSSYSLSKLCDAMLAFEMAARFGSGAQPTVNTLDPGTVNTKMLLAGWGMCGIPVTRANNEFWLATSPDVEGVNGKYFTSCRESRASQVAYDPEARRRLWEYLERTTGVTY 327          
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A7S2V5E2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5E2_9STRA)

HSP 1 Score: 244 bits (623), Expect = 3.190e-72
Identity = 140/290 (48.28%), Postives = 190/290 (65.52%), Query Frame = 1
Query:  190 SMSGGRLADKVYLVTGSTDGIGKHTASRLAEEGA----RVIVHGRRETAVKEAVELLKGK-----GKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARR--APDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSF 1026
            S + G    KVYLVTGSTDGIG+HT  RLA   A     V+VHGR       AV+ ++ K     G G RVE +VA++S++RG+  L ++  AR   LDCL+NNAG         ++ ++D LE TFAVNV+APY++T  LLDL+    G  R++NV+S+S  Y ++FDNLQF+ GGYSDHAAYSLSKLL +M++ E A R  +PD +T NSLDPGTVNTKML AGWG  GI +  A+++F+LATSD V G  G Y+V +   +    A D     +L+++LE ++G S+
Sbjct:   73 SSANGGGGGKVYLVTGSTDGIGRHTCGRLAALAADGDSTVVVHGRDPARCALAVDWVREKSLSAGGGGCRVESIVADISTIRGVASLANQFKARFGRLDCLINNAGV----FEQSYQLTEDNLEMTFAVNVMAPYLLTFLLLDLMLPHKGS-RIINVSSISQGYDVNFDNLQFQNGGYSDHAAYSLSKLLMVMYSLESAERIGSPD-LTINSLDPGTVNTKMLYAGWGACGIDVSRADNEFWLATSDQVEGINGRYFVGKGDSSASRAAYDSTNRSKLFEILEGITGVSY 356          
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A7S1HEF3_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HEF3_HEMAN)

HSP 1 Score: 243 bits (619), Expect = 3.310e-72
Identity = 133/282 (47.16%), Postives = 187/282 (66.31%), Query Frame = 1
Query:  193 MSGGRLADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARR---APDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSFA 1029
            MSGG  + K+ LVTGSTDGIG+HTA++LA++G +V++HGR +  +   V+ +K K  G  ++  +A+ +SL  +  L  E+ A+   +D L+NNAG   + +    + + DG E TF VNVLAP+++T  +LDLV K+  G +++ V+S+S SY+LDFDNLQ +KG +SDH++YSLSKL + M   ELA R   A  GVT N+LDPGTVNTKML AGWGM GI +  AN Q  LAT   + G TG+Y+V  R     PP  D E   RLWK++ DL+G  ++
Sbjct:   38 MSGGDGSKKIALVTGSTDGIGQHTATKLAQDGFKVLIHGRSQKRIDATVQRIKDKAPGCELDTFLADFASLEDVRKLSKELHAKCPRIDLLINNAGVFSQSM----QKTVDGNEMTFQVNVLAPFLLTSLVLDLVKKSEKG-KIIIVSSISQSYALDFDNLQMQKG-FSDHSSYSLSKLCNAMHAIELAERLKGALPGVTVNTLDPGTVNTKMLEAGWGMCGIDLSRANYQHTLATDPSLDGETGQYFVGGRNTKASPPCYDTEQRQRLWKIMTDLTGADYS 313          
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A2P6TE58_CHLSO (Short chain dehydrogenase reductase family n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TE58_CHLSO)

HSP 1 Score: 229 bits (584), Expect = 1.430e-67
Identity = 134/276 (48.55%), Postives = 177/276 (64.13%), Query Frame = 1
Query:  208 LADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQR---VEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELA---RRAPDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSG 1017
            L  K + VTG+TDGIG HTA RLA +GA V+VHGR    V++AV  ++  G G       G VA+L+SL  +  L +EV A + S+D L+NNAG          R S+DG E T+AVNV AP+++T  LL+ V +     RVV V+S+SA+ S+D+ NLQ E+G +S H AYSLSKL + +F  ELA   R A   VTCN LDPGTVNTKML AGWG  GIP+K AN +   AT   ++GT+GEY+V  R+  PP  A D+    RLW++LE+ +G
Sbjct:    5 LLGKTFFVTGATDGIGAHTAQRLAAQGATVLVHGRNPGRVEQAVAAVERAGSGSGGAPPRGFVADLASLAQVRRLAEEVAASSPSVDVLINNAGV----FEQQLRKSEDGFELTWAVNVAAPFLLTACLLEAVRE-----RVVVVSSISAASSIDWGNLQQERG-FSAHNAYSLSKLAEQLFTFELADRLRAAGSPVTCNCLDPGTVNTKMLSAGWGSIGIPVKEANYELKAATDPALAGTSGEYFVGGRIARPPSIARDKAEQQRLWRLLEEQTG 270          
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A835YNH2_9STRA (Oxidoreductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH2_9STRA)

HSP 1 Score: 225 bits (573), Expect = 6.790e-66
Identity = 127/277 (45.85%), Postives = 176/277 (63.54%), Query Frame = 1
Query:  208 LADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGG---YSDHAAYSLSKLLDIMFNAELARR-APDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSF 1026
            LA K+ LVTGSTDGIG+HTA++LA +GA V+VHGR +  + +AVE +K +    +V G++A++S+L GM  L   V   T  LD L++NAG       +  R ++DG E  FA NVLAP+V TG LL L+ +A    RV+ V+S+S  Y+    + QFE+ G   +SDH +YSLSKL D M + E   R A   +T N+LDPGTVNTKML AGWGM GI +  ANDQ+ LATS+++ G +G+Y++S R     P   D  A  +LW     +SG+ +
Sbjct:    8 LAGKIALVTGSTDGIGRHTATKLATDGATVLVHGRNQERLAKAVEGVKKQSSNDQVHGILADISTLAGMRTLSTAVHQHTSVLDILVSNAGI----FESCRRTTEDGTELVFATNVLAPFVTTGLLLPLL-RASAAARVITVSSMSQGYAAGLVDPQFERDGGSAFSDHRSYSLSKLCDAMLSMEFHERFASPTLTFNTLDPGTVNTKMLDAGWGMCGIAVNRANDQYTLATSENLKGVSGKYFISARETRANPACYDPVARKQLWDYCAKVSGFDY 279          
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A5J4XR04_9CHLO (Short chain dehydrogenase reductase family n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XR04_9CHLO)

HSP 1 Score: 222 bits (566), Expect = 5.360e-65
Identity = 127/281 (45.20%), Postives = 174/281 (61.92%), Query Frame = 1
Query:  193 MSGGRLADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAG--KRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRA-PDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSF 1026
            M  G ++ K YLVTGSTDGIG+HTAS+L   GA V++HGR +  V      L    KG ++      L+S   +    + + A  +++D L+NNAG  +  R L      S+DG E T+A+NVLAP+++T  L D+V       R+VNV+S+SA  S+DFDNLQ EKG +S H +YSLSKL  +MF  +LA    P GVT N LDPGTVNTKML AGWG  GI +K AN ++ LAT   ++  TG+YYV+ R    P  A+D++   RLW+++ D +G  F
Sbjct:    1 MQHGEVSGKTYLVTGSTDGIGRHTASKLVAAGANVLLHGRTQEKVTATKRDLDSIAKGNKISSYTYNLASFSQIRKFAEAIRANHNNIDVLINNAGVFETQRSL------SEDGYEMTWAINVLAPFLLTSLLKDVVTD-----RIVNVSSISAGSSIDFDNLQQEKG-FSSHNSYSLSKLASMMFTCDLAEHMKPKGVTVNCLDPGTVNTKMLIAGWGACGIDVKDANYEYKLATDPSLAKETGKYYVNGRESRLPAVAKDQKFRKRLWQIMTDQTGAIF 269          
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A061S8W3_9CHLO (Short chain dehydrogenase reductase family n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8W3_9CHLO)

HSP 1 Score: 221 bits (564), Expect = 1.200e-64
Identity = 135/274 (49.27%), Postives = 174/274 (63.50%), Query Frame = 1
Query:  217 KVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQ-RVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAG--KRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRAPDG-VTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSF 1026
            KV+LVTGSTDGIG HTA  LA  G  VIVHGR E  V++AV  ++   +G  +V     + SSL+ +  L D+V     ++D L+NNAG  K G+ L      S DG E T+AVNVLAP+V+T  L ++V       RVVN AS+SA +S+D DNL  EKG +S H AYSLSKLLDI+   ELA R  +   T N+LDPGTVNTKML AGWG  GIP++SA D+FY++TS D+ G +GEY+V +R    P  A D      LW++ E  +G  F
Sbjct:   13 KVFLVTGSTDGIGLHTAKLLAAGGGSVIVHGRNELRVRDAVAEVERVARGNGKVASYTRDFSSLQEVKRLGDDVKRDFATIDVLVNNAGVYKEGKEL------SQDGFEMTYAVNVLAPFVLTSALHNIVTS-----RVVNTASISAGHSVDLDNLNQEKG-FSSHNAYSLSKLLDIILTFELAERLKEKPFTVNTLDPGTVNTKMLLAGWGPIGIPVESA-DEFYVSTSPDLEGVSGEYFVGKRRTRAPAAAYDRGLRETLWRLWEQQTGVRF 273          
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A7S0QHA5_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QHA5_9CRYP)

HSP 1 Score: 219 bits (558), Expect = 6.770e-63
Identity = 128/280 (45.71%), Postives = 172/280 (61.43%), Query Frame = 1
Query:  184 TTSMSGGRLADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELAR---RAPDGVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLS 1014
            +++  G  L  K  LVTG+TDGIG HTA++LA  G  V++HGR    ++EA+  ++       VE   A+ SSLR ++    EVL +   LD L+NNAG   + +    R ++DG E TF VNVLAP+++T  LL +VAKA  G RV+ V+S+S S  +D+DNLQ EKG +S H +YSLSKL + M   ELAR   R    V+ N+LDPGTVNTKML AGWG  G+ +  AND+F LAT     G +G+Y+V  R      P  D  AC  LW+ LE L+
Sbjct:   55 SSAEGGPALGQKTALVTGATDGIGLHTATKLANAGYFVLIHGRDPVRIQEALRKIRLSNPKAGVESFQADFSSLRDVSRFASEVLEQYQCLDLLINNAGVFSQQM----RTTEDGNEMTFQVNVLAPFLLTKALLPIVAKAQAG-RVIIVSSISQSSRIDWDNLQMEKG-FSSHESYSLSKLCNAMHALELARATARTAPHVSVNTLDPGTVNTKMLLAGWGYCGMEVADANDEFLLATDPRFEGVSGKYFVGGRERQAAAPCYDAAACAELWRRLEALT 328          
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Match: A0A7S4DEJ2_9EUKA (Hypothetical protein n=4 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DEJ2_9EUKA)

HSP 1 Score: 218 bits (555), Expect = 2.550e-62
Identity = 130/280 (46.43%), Postives = 171/280 (61.07%), Query Frame = 1
Query:  190 SMSGGRLADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGKGKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHADFRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYSLDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRAPD-GVTCNSLDPGTVNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPPPAEDEEACGRLWKVLEDLSGYSF 1026
            S  GG L  K   VTGSTDGIG+HTA RLA EG +V++HGR +  + +A+  ++       +EG +A+  SL  +  L + V +    ++ L+NNAG      +   R + DG E T+ VNV+AP+++T  LL  + K+P G RV+ V+S+S S SLDFDNLQ +KG YS H AYS+SKL D M   ELA +    GVT N+LDPGTVNTKML  GWG  GI +  ANDQF+LATS ++  T+G YYV R   T    A       RLW+ LED  G  F
Sbjct:   77 SGGGGALEGKTAFVTGSTDGIGQHTARRLAAEGCKVVLHGRSQQRLDKAISEIRRTTNNPNIEGYLADFESLDEIRKLGETVRSDHPCINILINNAGV----FNPKNRKTKDGYETTWQVNVMAPFLLTHALLPNLKKSPKG-RVIIVSSISQSSSLDFDNLQQQKG-YSAHNAYSISKLADAMIAYELADKLQGTGVTVNTLDPGTVNTKMLLEGWGPCGISVSDANDQFWLATSPELENTSGRYYVYRNERTSSRFAHTPANRQRLWRELEDSCGIRF 350          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMR3_ECTSI9.940e-15675.23Oxidoreductase, short chain dehydrogenase/reductas... [more]
A0A6V2U0S1_HETAK3.740e-7648.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2V5E2_9STRA3.190e-7248.28Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1HEF3_HEMAN3.310e-7247.16Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A2P6TE58_CHLSO1.430e-6748.55Short chain dehydrogenase reductase family n=1 Tax... [more]
A0A835YNH2_9STRA6.790e-6645.85Oxidoreductase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A5J4XR04_9CHLO5.360e-6545.20Short chain dehydrogenase reductase family n=1 Tax... [more]
A0A061S8W3_9CHLO1.200e-6449.27Short chain dehydrogenase reductase family n=2 Tax... [more]
A0A7S0QHA5_9CRYP6.770e-6345.71Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
A0A7S4DEJ2_9EUKA2.550e-6246.43Hypothetical protein n=4 Tax=Lotharella globosa Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:564185..567717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score455.7
Seed ortholog evalue1.8e-125
Seed eggNOG ortholog2880.D8LMR3
Hectar predicted targeting categorysignal peptide
GOsGO:0006950,GO:0006970,GO:0008150,GO:0009628,GO:0009987,GO:0033554,GO:0050896,GO:0051716,GO:0071214,GO:0071470,GO:0104004
EggNOG free text desc.oxidation-reduction process
EggNOG OGsCOG1028@1,KOG1208@2759
Ec32 ortholog descriptionShort-chain dehydrogenase/reductase SDR
Ec32 orthologEc-02_003350.1
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1700
Cds size975
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930638.2514184-UTR-C-linearis_contig84:564184..5648521622930638.2514184-UTR-C-linearis_contig84:564184..564852Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 564185..564852 -
1690881172.6802807-UTR-C-linearis_contig84:564184..5648521690881172.6802807-UTR-C-linearis_contig84:564184..564852Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 564185..564852 -
1622930638.3578212-UTR-C-linearis_contig84:567660..5677171622930638.3578212-UTR-C-linearis_contig84:567660..567717Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 567661..567717 -
1690881172.7639484-UTR-C-linearis_contig84:567660..5677171690881172.7639484-UTR-C-linearis_contig84:567660..567717Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 567661..567717 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930638.2708685-CDS-C-linearis_contig84:564852..5650211622930638.2708685-CDS-C-linearis_contig84:564852..565021Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 564853..565021 -
1690881172.698064-CDS-C-linearis_contig84:564852..5650211690881172.698064-CDS-C-linearis_contig84:564852..565021Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 564853..565021 -
1622930638.287928-CDS-C-linearis_contig84:565343..5657051622930638.287928-CDS-C-linearis_contig84:565343..565705Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 565344..565705 -
1690881172.712361-CDS-C-linearis_contig84:565343..5657051690881172.712361-CDS-C-linearis_contig84:565343..565705Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 565344..565705 -
1622930638.3050005-CDS-C-linearis_contig84:566196..5664401622930638.3050005-CDS-C-linearis_contig84:566196..566440Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 566197..566440 -
1690881172.7252712-CDS-C-linearis_contig84:566196..5664401690881172.7252712-CDS-C-linearis_contig84:566196..566440Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 566197..566440 -
1622930638.3267376-CDS-C-linearis_contig84:567177..5672311622930638.3267376-CDS-C-linearis_contig84:567177..567231Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 567178..567231 -
1690881172.7393928-CDS-C-linearis_contig84:567177..5672311690881172.7393928-CDS-C-linearis_contig84:567177..567231Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 567178..567231 -
1622930638.3434806-CDS-C-linearis_contig84:567514..5676601622930638.3434806-CDS-C-linearis_contig84:567514..567660Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 567515..567660 -
1690881172.7528002-CDS-C-linearis_contig84:567514..5676601690881172.7528002-CDS-C-linearis_contig84:567514..567660Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 567515..567660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16117.1prot_C-linearis_contig84.16117.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 564853..567660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16117.1

>prot_C-linearis_contig84.16117.1 ID=prot_C-linearis_contig84.16117.1|Name=mRNA_C-linearis_contig84.16117.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=325bp
MNTSMLRFLLVCPTLCRGFLLARQQLSSSSSSLSSSRQHFGTTTSMSGGR
LADKVYLVTGSTDGIGKHTASRLAEEGARVIVHGRRETAVKEAVELLKGK
GKGQRVEGVVAELSSLRGMNHLCDEVLARTDSLDCLLNNAGKRGRGLHAD
FRHSDDGLEYTFAVNVLAPYVITGRLLDLVAKAPGGGRVVNVASLSASYS
LDFDNLQFEKGGYSDHAAYSLSKLLDIMFNAELARRAPDGVTCNSLDPGT
VNTKMLRAGWGMGGIPIKSANDQFYLATSDDVSGTTGEYYVSRRVYTPPP
PAEDEEACGRLWKVLEDLSGYSFA*
back to top

mRNA from alignment at C-linearis_contig84:564185..567717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16117.1 ID=mRNA_C-linearis_contig84.16117.1|Name=mRNA_C-linearis_contig84.16117.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3533bp|location=Sequence derived from alignment at C-linearis_contig84:564185..567717- (Chordaria linearis ClinC8C monoicous)
CCTACTTCGACAAGTTTTCACGTTTTCACTGCGTACAACAACCGCCGTGC GTAGGTCATGAACACCAGCATGCTGCGTTTTTTGCTGGTGTGCCCGACGC TGTGCCGCGGCTTCCTGTTGGCAAGGCAGCAGCTGTCGTCGTCGTCGTCG TCACTCTCGAGTTCCCGTCAACATTTTGGGACAACAACGTCAATGTCTGG AGGGTGAGTGAACTTTGGACGCAGCAGCAGTGGCAAACGATTTGAGCGCA TGTACACACCTTGCTGCCTTAGTCCCCGCGCGGAGTGCGATGCATAGTAG TTGATAACAGGGCATGGTGTTTCAAACAGTTGTGCAATGCTGGTGTGCTC TACAACTTGTGCGGGATCATGATCTGCCACCAGGTCTCCGCAAGCCACGA ACTCTGATTTGTTCCAAAAACGGTACCTGGTACTGGTAGTAAATAGTCTG TCTGATTGCCTGAACGCCTTCCATTTTTCGAGACAGGAGACTGGCCGACA AGGTTTATCTCGTGACGGGTTCAACGGATGGCATCGGAAAGTGAGTCTCG GTTTAGGTTGTGCGCTCCCGCCGCTTTAAACAAACACCGCTGCTAGTGAA CAACATCTCCGCGACGTTACGACGTTCGTGGGAACATCCTTGTACCGATC AACGCCGTCAATGGCGTTTGGCTCTGGTTGCTATTGGGTGCATGCGCAAC ATGGATACCCCGTGCCAAGACTCTCTGTTGACGAGCCCTGTCCAGCTCCT TAAGGGAAAAACAACAAAAACTGCCAAGAACTTGCCACGTATGTCCTCGA AGTATATCCGCTAAATACTAAATACACGTACATACCACGTTTGCCCTCAA AGACAGCGGGCGATAGCTGACGGTCAAATGATACGGGTACACTCGAGACA CAAATCTTAGATCGAAGCGACGAGCGATACGGAGTGAACAACGAGGTAGT TCGGCGTACTGCAGGTGCAAGAGCTGAACGCATCAGGAAGTTCAAAGGAA CATATCGAGGTTGGCGTTGAAAAGTTGGTTGTTGGAATTTGGCGGAACAC CGCGAAACTCAAACTTCAAAACGTGGTGGTAGAGTAGACGCTGACTATGA AGAAATCGTATCCGTTCACCAAATCGGAAAGATAGATCGACAAACAGGCT GCAACAGAGAGACGGAATCTGTACTTTTCCAAAATATTGACAAAAGGAAA CCACTTCATATGCTTCCCATTTCTAAGATGTCGCTGAACTATCATATGCA TGCATGTACCCCAAAACAAAAACACAGGCACACGGCCTCCCGACTCGCCG AGGAAGGCGCGCGCGTCATCGTCCACGGCCGCCGAGAAACAGCCGTAAAA GAGGCCGTCGAGCTCTTGAAGGGAAAAGGGAAAGGCCAGCGGGTGGAGGG CGTCGTTGCTGAATTGAGTTCGTTGCGCGGAATGAACCACCTGTGCGACG AGGTTCTGGCTCGGACCGACAGTCTCGACTGCCTCCTCAACAACGCAGGC AAGCGGGGGCGGGGCTTGCACGTTGTGTGATAGCTAACCCCACGAGGAGC TGATGCTTTTTAGAGAGGCCTGCGGTGCGACAGAGAGAGAGAGAGAGACG GAGAGAGGGGGAGAGAAGGAGTATGGGTGATGGCGTTGTGATGGGAGCTT GCCGCGGGACCCCCTGTATGCTCTGCCTTGTTCTCGTTGTGAGATGTAGG CTCTGTCTTGTTGTGAGACAGCCGCTGCGCGTGTTAAAAGCGTGTGCAGG GGTCTTGCCACGACTACCGCTCACCTGTTTTTGCCTTGTTCATGTCACTA TTTGTTTAAAACAAATTAACGACAAGATATATATACTCCGAGTATATTTT TGAACCAAACCTGACAAATGTGATATGTCACAAGAACTGACATCATATGC GACACCGTCCACTGGTCGTTGGTTTTTCGGTTTGCCGTGCTTCGCGCATT TGACGGCTCCCGTTGCCTTCTGTCGGCGGTTCATTTGTCTCTGATCGCCA GGGGTTTTTGAGGCGGACTTTCGTCATAGTGACGACGGGTTGGAGTACAC CTTCGCCGTCAACGTCCTCGCGCCGTACGTCATCACGGGCCGCTTGCTGG ACTTGGTGGCCAAAGCGCCAGGAGGGGGCCGCGTGGTGAACGTGGCGAGC CTGTCGGCGTCGTACTCCCTCGACTTTGATAACCTGCAGTTCGAAAAAGG CGGGTACAGCGACCACGCTGCTTACTCGCTCTCCAAGCTGCTGGATATCA TGTTCAACGCGGAGCTTGCTAGAAGAGCCCCCGACGGGGTGACGTGCAAC TCTTTGGACCCGGGGACTGTTAACACGAAGATGCTCAGGGCTGGATGGGG CATGGGGGGGATCCCGATCAAGAGGTAAGAAACCAGTAAAGGCTCGTTGG GATTAAGATCCAAGAGTCAAGCAGGATACAAAAGTTGGATATCGATATTA CAGCATTGTTTTCTGCACTCGCGGGCAAAGGGTGAACCTCCCATCAAAGG CCCGGGTAGTAAATGTAGGCAGCGCTATCGCTGTAGCTGCCGACACTGGC TGGCATGCAATTTCGCCCAAAGTGGGTGTTGCCTGATGGACTCCTCCTCA ACAACCCAACCCACAGCTCGCACGCCTGCTTCCTTCCCCTGCTCGCCGCC CTCTCTTCTCTCCCGCCTGCGTGACGCGACGTGCCGCGGTCAACAGCGCG AACGACCAGTTTTATCTGGCAACGAGCGACGATGTGAGCGGCACCACCGG GGAATACTACGTCAGCCGCAGGGTGTACACCCCCCCGCCTCCGGCGGAAG ACGAGGAGGCGTGCGGGCGGCTGTGGAAGGTTTTGGAAGACCTCAGCGGC TACAGCTTTGCATGATTTTTACGCTGCTAGGGCCGAGCTTTGGAAGGCCA TGCACACGACGCGCCCGCCCTGCAGCCGACCGGAGTACGGTACGCATGGC CTTTTTGGCCGACGTGCCACGGCAGCAACGCCAGAAAGAGTGTCCCTACG GGGGCTTCGCCACACTAGTCGAAGTGCGGAAAGGGCTTTGTACGTATGAC GATATGCCCGTGTGTGTACGGGGGAGACACGTGTAGGTACTCTCGCAAGT TTTGTGCAGCGCGTGTGGCGAGATATCTGGTATTTTCCCTCTCCCGTGCC TCCCTCCCGCCGGACCCGCGGATACTTGCGTTCGGGAGGATTTCGTATGC ATACCTGTAGATACGGGGATCGCTCTGAGTATCATAGTGCATTGCACGGT TGCACGGTCAGCGAAGCGCGCGCTTTGTTGAGACGCCGATGGACCACCAG AAGAGAGAAGATTACAACGTCCTTTCAAGAGAAAAAAACAATCTGGCAAC GCCGAGCGTAGATCGACCGCGCCACCCGGCACTGCAGATCGAAGAATGAC TTGGAGAAGGAGTGTCAAAATGTCCTAGACTAATTAGGTAGGACTGCTGT GCCTGTAGACGGTTGGTTCGAAAAATACAGCAGAGTAGATGCCGCCAATG CGCAAGTTCGTCGTTGTGTGCGCACTCTCTCCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig84:564185..567717-

>mRNA_C-linearis_contig84.16117.1 ID=mRNA_C-linearis_contig84.16117.1|Name=mRNA_C-linearis_contig84.16117.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1950bp|location=Sequence derived from alignment at C-linearis_contig84:564185..567717- (Chordaria linearis ClinC8C monoicous)
ATGAACACCAGCATGCTGCGTTTTTTGCTGGTGTGCCCGACGCTGTGCCG
CGGCTTCCTGTTGGCAAGGCAGCAGCTGTCGTCGTCGTCGTCGTCACTCT
CGAGTTCCCGTCAACATTTTGGGACAACAACGTCAATGTCTGGAGGATGA
ACACCAGCATGCTGCGTTTTTTGCTGGTGTGCCCGACGCTGTGCCGCGGC
TTCCTGTTGGCAAGGCAGCAGCTGTCGTCGTCGTCGTCGTCACTCTCGAG
TTCCCGTCAACATTTTGGGACAACAACGTCAATGTCTGGAGGGAGACTGG
CCGACAAGGTTTATCTCGTGACGGGTTCAACGGATGGCATCGGAAAGAGA
CTGGCCGACAAGGTTTATCTCGTGACGGGTTCAACGGATGGCATCGGAAA
GCACACGGCCTCCCGACTCGCCGAGGAAGGCGCGCGCGTCATCGTCCACG
GCCGCCGAGAAACAGCCGTAAAAGAGGCCGTCGAGCTCTTGAAGGGAAAA
GGGAAAGGCCAGCGGGTGGAGGGCGTCGTTGCTGAATTGAGTTCGTTGCG
CGGAATGAACCACCTGTGCGACGAGGTTCTGGCTCGGACCGACAGTCTCG
ACTGCCTCCTCAACAACGCAGGCAAGCGGGGGCGGGGCTTGCACGCACAC
GGCCTCCCGACTCGCCGAGGAAGGCGCGCGCGTCATCGTCCACGGCCGCC
GAGAAACAGCCGTAAAAGAGGCCGTCGAGCTCTTGAAGGGAAAAGGGAAA
GGCCAGCGGGTGGAGGGCGTCGTTGCTGAATTGAGTTCGTTGCGCGGAAT
GAACCACCTGTGCGACGAGGTTCTGGCTCGGACCGACAGTCTCGACTGCC
TCCTCAACAACGCAGGCAAGCGGGGGCGGGGCTTGCACGCGGACTTTCGT
CATAGTGACGACGGGTTGGAGTACACCTTCGCCGTCAACGTCCTCGCGCC
GTACGTCATCACGGGCCGCTTGCTGGACTTGGTGGCCAAAGCGCCAGGAG
GGGGCCGCGTGGTGAACGTGGCGAGCCTGTCGGCGTCGTACTCCCTCGAC
TTTGATAACCTGCAGTTCGAAAAAGGCGGGTACAGCGACCACGCTGCTTA
CTCGCTCTCCAAGCTGCTGGATATCATGTTCAACGCGGAGCTTGCTAGAA
GAGCCCCCGACGGGGTGACGTGCAACTCTTTGGACCCGGGGACTGTTAAC
ACGAAGATGCTCAGGGCTGGATGGGGCATGGGGGGGATCCCGATCAAGAG
GCGGACTTTCGTCATAGTGACGACGGGTTGGAGTACACCTTCGCCGTCAA
CGTCCTCGCGCCGTACGTCATCACGGGCCGCTTGCTGGACTTGGTGGCCA
AAGCGCCAGGAGGGGGCCGCGTGGTGAACGTGGCGAGCCTGTCGGCGTCG
TACTCCCTCGACTTTGATAACCTGCAGTTCGAAAAAGGCGGGTACAGCGA
CCACGCTGCTTACTCGCTCTCCAAGCTGCTGGATATCATGTTCAACGCGG
AGCTTGCTAGAAGAGCCCCCGACGGGGTGACGTGCAACTCTTTGGACCCG
GGGACTGTTAACACGAAGATGCTCAGGGCTGGATGGGGCATGGGGGGGAT
CCCGATCAAGAGCGCGAACGACCAGTTTTATCTGGCAACGAGCGACGATG
TGAGCGGCACCACCGGGGAATACTACGTCAGCCGCAGGGTGTACACCCCC
CCGCCTCCGGCGGAAGACGAGGAGGCGTGCGGGCGGCTGTGGAAGGTTTT
GGAAGACCTCAGCGGCTACAGCTTTGCATGACGCGAACGACCAGTTTTAT
CTGGCAACGAGCGACGATGTGAGCGGCACCACCGGGGAATACTACGTCAG
CCGCAGGGTGTACACCCCCCCGCCTCCGGCGGAAGACGAGGAGGCGTGCG
GGCGGCTGTGGAAGGTTTTGGAAGACCTCAGCGGCTACAGCTTTGCATGA
back to top