mRNA_C-linearis_contig84.16107.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16107.1
Unique NamemRNA_C-linearis_contig84.16107.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: D7G330_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G330_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 3.230e-33
Identity = 65/105 (61.90%), Postives = 77/105 (73.33%), Query Frame = -2
Query:    3 DEEPSMAALVGRSGAGKITAATAMVGERS-PVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDGEIH 314
            D  P++AAL GRSGAGK TAA AMVGER  P+ P A E E  A TRLD +RA F DG++WLRVGKG G  DRLP LM +LAKALHE+V++ Y+D P   EDGE +
Sbjct:  195 DGGPAVAALGGRSGAGKTTAAAAMVGERQGPIHPLARENEEQAGTRLDRLRARFSDGVVWLRVGKGAGVADRLPLLMRKLAKALHEEVLKSYVDGPGIGEDGESY 299          
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: A0A6H5K0A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A6_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 7.570e-29
Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = -2
Query:   21 DEEPSMAALVGRSGAGKITAATA-MVGERS-PVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAA 314
            D  P+ AAL G+ GAGK TAA A MVGER  P+ P A E E  ARTRLD +RA F DG++WLRVGKG GA DRLP LM +LAKALHE+V++ ++DAP  A
Sbjct:  309 DGGPAAAALGGQRGAGKTTAAAAAMVGERQGPIHPLAHENEEQARTRLDRLRARFSDGVMWLRVGKGAGASDRLPLLMRKLAKALHEEVLKSHVDAPGVA 408          
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 1.110e-26
Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = -2
Query:    3 EEPSMAALVGRSGAGKITAATAMVGERS-PVRPCAGETENDARTRLDH---VRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDGEIH 311
            +EP++AAL G+SGAGK TAA  MV  R   +R    ETE+ ARTR+D    VRA F DG+++LRVGKGEGA DRLP LM +LAKALHEDV++K   AP A E GE +
Sbjct:  281 DEPAVAALTGKSGAGKSTAAADMVRNRKVDIRGLDDETEDQARTRMDRLERVRARFSDGVVYLRVGKGEGAADRLPDLMRKLAKALHEDVLKKTAGAPEAGEKGESY 387          
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: A0A6H5KUE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE6_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 4.560e-22
Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = -2
Query:    3 PSMAALVGRSGAGKITAATAMVGERSPVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDGEIH 305
            P++AAL GRSG GK T+A A++ ER P+ P AGETE+ ARTRLD                +GEG  +R P+LMH LAKA +EDVMEK +D PAA EDGE +
Sbjct:  112 PAVAALTGRSGTGKTTSAAAVLRERGPIHPRAGETEDMARTRLD----------------RGEGDENRSPSLMHTLAKARYEDVMEKRVDTPAAGEDGESY 196          
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 3.420e-20
Identity = 52/95 (54.74%), Postives = 60/95 (63.16%), Query Frame = -2
Query:   30 DEEPSMAALVGRSGAGKITAATAMVGERSPVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAP 314
            D  P+MAAL G SGAGK T+A AMVGER                  D VRALFPDG++WL VG+  G  DRLP+LM  LAK LHEDVM+  +DAP
Sbjct:  198 DGGPAMAALTGGSGAGKTTSAAAMVGERG-----------------DRVRALFPDGVVWLWVGREAGTADRLPSLMSNLAKRLHEDVMKGAVDAP 275          
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 3.120e-17
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = -2
Query:   12 EEPSMAALVGRSGAGKITAATAMVGERSPVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDG 311
            + P +  LVGRSG+GK T A ++VGE S  R    ET +    RL+ VR  F DG++WLRVG+G G+ +R+PALM +LAK + ED+   Y  AP A+  G
Sbjct:  251 QTPQVVGLVGRSGSGKTTCAASIVGE-STGRRHQNETGDQMLRRLNRVREHFRDGVVWLRVGRGGGSAERVPALMSQLAKTVFEDLKHSYGFAPGASPTG 349          
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 7.140e-6
Identity = 38/101 (37.62%), Postives = 49/101 (48.51%), Query Frame = -2
Query:   12 DEEPSMAALVGRSGAGKITAATAMVGERSPVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDG 314
            D  P +  LVG SGAGK TAA+A+V                       VR  F DGI+WL V   EG  D LP LM +LA+ + ED+       P+ ++DG
Sbjct:  231 DGGPHLVGLVGDSGAGKTTAASAIVSSIV-------------------VRETFSDGIVWLPVN--EGVHDNLPCLMLQLAQMVFEDIGGSVGRRPSGSDDG 310          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G330_ECTSI3.230e-3361.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0A6_9PHAE7.570e-2962.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE50_9PHAE1.110e-2658.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUE6_9PHAE4.560e-2253.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSI2_9PHAE3.420e-2054.74NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LFN6_ECTSI3.120e-1747.00NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KRK8_9PHAE7.140e-637.62NB-ARC domain-containing protein n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:410696..411010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930631.3066955-CDS-C-linearis_contig84:410695..4110101622930631.3066955-CDS-C-linearis_contig84:410695..411010Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 410696..411010 +
1690881168.7647474-CDS-C-linearis_contig84:410695..4110101690881168.7647474-CDS-C-linearis_contig84:410695..411010Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 410696..411010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16107.1prot_C-linearis_contig84.16107.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 410696..411010 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16107.1

>prot_C-linearis_contig84.16107.1 ID=prot_C-linearis_contig84.16107.1|Name=mRNA_C-linearis_contig84.16107.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=105bp
MWISPSSAAAGASMYFSITSSWSALASLCIRAGSRSGAPSPFPTRSHRMP
SGKSALTWSKRVRASFSVSPAQGRTGLRSPTMAVAAVILPAPLRPTRAAM
LGSSS
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mRNA from alignment at C-linearis_contig84:410696..411010+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16107.1 ID=mRNA_C-linearis_contig84.16107.1|Name=mRNA_C-linearis_contig84.16107.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at C-linearis_contig84:410696..411010+ (Chordaria linearis ClinC8C monoicous)
ATGTGGATCTCACCGTCCTCGGCCGCCGCCGGGGCGTCGATGTACTTTTC CATCACATCTTCGTGGAGTGCCTTGGCTAGCCTATGCATCAGAGCTGGTA GCCGATCTGGAGCACCCTCCCCTTTCCCGACCCGCAGCCACAGAATGCCG TCGGGGAAAAGCGCCCTCACGTGGTCCAAGCGAGTGCGGGCGTCGTTTTC GGTCTCACCAGCGCAAGGACGGACGGGACTACGCTCACCCACCATGGCGG TGGCGGCAGTGATTTTGCCCGCCCCGCTTCGACCCACGAGGGCTGCCATG CTTGGCTCTTCATCC
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Coding sequence (CDS) from alignment at C-linearis_contig84:410696..411010+

>mRNA_C-linearis_contig84.16107.1 ID=mRNA_C-linearis_contig84.16107.1|Name=mRNA_C-linearis_contig84.16107.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at C-linearis_contig84:410696..411010+ (Chordaria linearis ClinC8C monoicous)
ATGTGGATCTCACCGTCCTCGGCCGCCGCCGGGGCGTCGATGTACTTTTC
CATCACATCTTCGTGGAGTGCCTTGGCTAGCCTATGCATCAGAGCTGGTA
GCCGATCTGGAGCACCCTCCCCTTTCCCGACCCGCAGCCACAGAATGCCG
TCGGGGAAAAGCGCCCTCACGTGGTCCAAGCGAGTGCGGGCGTCGTTTTC
GGTCTCACCAGCGCAAGGACGGACGGGACTACGCTCACCCACCATGGCGG
TGGCGGCAGTGATTTTGCCCGCCCCGCTTCGACCCACGAGGGCTGCCATG
CTTGGCTCTTCATCCATGTGGATCTCACCGTCCTCGGCCGCCGCCGGGGC
GTCGATGTACTTTTCCATCACATCTTCGTGGAGTGCCTTGGCTAGCCTAT
GCATCAGAGCTGGTAGCCGATCTGGAGCACCCTCCCCTTTCCCGACCCGC
AGCCACAGAATGCCGTCGGGGAAAAGCGCCCTCACGTGGTCCAAGCGAGT
GCGGGCGTCGTTTTCGGTCTCACCAGCGCAAGGACGGACGGGACTACGCT
CACCCACCATGGCGGTGGCGGCAGTGATTTTGCCCGCCCCGCTTCGACCC
ACGAGGGCTGCCATGCTTGGCTCTTCATCC
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