mRNA_C-linearis_contig84.16107.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: D7G330_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G330_ECTSI) HSP 1 Score: 128 bits (322), Expect = 3.230e-33 Identity = 65/105 (61.90%), Postives = 77/105 (73.33%), Query Frame = -2
Query: 3 DEEPSMAALVGRSGAGKITAATAMVGERS-PVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDGEIH 314
D P++AAL GRSGAGK TAA AMVGER P+ P A E E A TRLD +RA F DG++WLRVGKG G DRLP LM +LAKALHE+V++ Y+D P EDGE +
Sbjct: 195 DGGPAVAALGGRSGAGKTTAAAAMVGERQGPIHPLARENEEQAGTRLDRLRARFSDGVVWLRVGKGAGVADRLPLLMRKLAKALHEEVLKSYVDGPGIGEDGESY 299
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: A0A6H5K0A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A6_9PHAE) HSP 1 Score: 118 bits (295), Expect = 7.570e-29 Identity = 62/100 (62.00%), Postives = 74/100 (74.00%), Query Frame = -2
Query: 21 DEEPSMAALVGRSGAGKITAATA-MVGERS-PVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAA 314
D P+ AAL G+ GAGK TAA A MVGER P+ P A E E ARTRLD +RA F DG++WLRVGKG GA DRLP LM +LAKALHE+V++ ++DAP A
Sbjct: 309 DGGPAAAALGGQRGAGKTTAAAAAMVGERQGPIHPLAHENEEQARTRLDRLRARFSDGVMWLRVGKGAGASDRLPLLMRKLAKALHEEVLKSHVDAPGVA 408
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: A0A6H5KE50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE50_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.110e-26 Identity = 63/107 (58.88%), Postives = 77/107 (71.96%), Query Frame = -2
Query: 3 EEPSMAALVGRSGAGKITAATAMVGERS-PVRPCAGETENDARTRLDH---VRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDGEIH 311
+EP++AAL G+SGAGK TAA MV R +R ETE+ ARTR+D VRA F DG+++LRVGKGEGA DRLP LM +LAKALHEDV++K AP A E GE +
Sbjct: 281 DEPAVAALTGKSGAGKSTAAADMVRNRKVDIRGLDDETEDQARTRMDRLERVRARFSDGVVYLRVGKGEGAADRLPDLMRKLAKALHEDVLKKTAGAPEAGEKGESY 387
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: A0A6H5KUE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE6_9PHAE) HSP 1 Score: 97.1 bits (240), Expect = 4.560e-22 Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = -2
Query: 3 PSMAALVGRSGAGKITAATAMVGERSPVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDGEIH 305
P++AAL GRSG GK T+A A++ ER P+ P AGETE+ ARTRLD +GEG +R P+LMH LAKA +EDVMEK +D PAA EDGE +
Sbjct: 112 PAVAALTGRSGTGKTTSAAAVLRERGPIHPRAGETEDMARTRLD----------------RGEGDENRSPSLMHTLAKARYEDVMEKRVDTPAAGEDGESY 196
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: A0A6H5JSI2_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI2_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 3.420e-20 Identity = 52/95 (54.74%), Postives = 60/95 (63.16%), Query Frame = -2
Query: 30 DEEPSMAALVGRSGAGKITAATAMVGERSPVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAP 314
D P+MAAL G SGAGK T+A AMVGER D VRALFPDG++WL VG+ G DRLP+LM LAK LHEDVM+ +DAP
Sbjct: 198 DGGPAMAALTGGSGAGKTTSAAAMVGERG-----------------DRVRALFPDGVVWLWVGREAGTADRLPSLMSNLAKRLHEDVMKGAVDAP 275
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: D8LFN6_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN6_ECTSI) HSP 1 Score: 85.5 bits (210), Expect = 3.120e-17 Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = -2
Query: 12 EEPSMAALVGRSGAGKITAATAMVGERSPVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDG 311
+ P + LVGRSG+GK T A ++VGE S R ET + RL+ VR F DG++WLRVG+G G+ +R+PALM +LAK + ED+ Y AP A+ G
Sbjct: 251 QTPQVVGLVGRSGSGKTTCAASIVGE-STGRRHQNETGDQMLRRLNRVREHFRDGVVWLRVGRGGGSAERVPALMSQLAKTVFEDLKHSYGFAPGASPTG 349
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Match: A0A6H5KRK8_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRK8_9PHAE) HSP 1 Score: 53.1 bits (126), Expect = 7.140e-6 Identity = 38/101 (37.62%), Postives = 49/101 (48.51%), Query Frame = -2
Query: 12 DEEPSMAALVGRSGAGKITAATAMVGERSPVRPCAGETENDARTRLDHVRALFPDGILWLRVGKGEGAPDRLPALMHRLAKALHEDVMEKYIDAPAAAEDG 314
D P + LVG SGAGK TAA+A+V VR F DGI+WL V EG D LP LM +LA+ + ED+ P+ ++DG
Sbjct: 231 DGGPHLVGLVGDSGAGKTTAASAIVSSIV-------------------VRETFSDGIVWLPVN--EGVHDNLPCLMLQLAQMVFEDIGGSVGRRPSGSDDG 310 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig84.16107.1 >prot_C-linearis_contig84.16107.1 ID=prot_C-linearis_contig84.16107.1|Name=mRNA_C-linearis_contig84.16107.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=105bp MWISPSSAAAGASMYFSITSSWSALASLCIRAGSRSGAPSPFPTRSHRMPback to top mRNA from alignment at C-linearis_contig84:410696..411010+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig84.16107.1 ID=mRNA_C-linearis_contig84.16107.1|Name=mRNA_C-linearis_contig84.16107.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at C-linearis_contig84:410696..411010+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig84:410696..411010+ >mRNA_C-linearis_contig84.16107.1 ID=mRNA_C-linearis_contig84.16107.1|Name=mRNA_C-linearis_contig84.16107.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at C-linearis_contig84:410696..411010+ (Chordaria linearis ClinC8C monoicous)back to top |