mRNA_C-linearis_contig84.16104.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16104.1
Unique NamemRNA_C-linearis_contig84.16104.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig84.16104.1 vs. uniprot
Match: A0A6H5KR51_9PHAE (Transmembrane protein 267 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR51_9PHAE)

HSP 1 Score: 286 bits (732), Expect = 9.570e-91
Identity = 182/326 (55.83%), Postives = 212/326 (65.03%), Query Frame = 3 
Query:   84 EGVLLLACIYSDLLPRALLSGFLRSHGAAWEALVDNVSHAGIAAVSWAVVVSLSPPPSPTAASFRLIALPASPLHRCLSCALRMYT-------------KAPPTXXXXXXXXTQRRTPEPGSALAEASCGDYDAVVVCQQARPGGEEKGGRSAAHKEAGRKGA------SASGVVEVAFAACIGSALDLDHFLAAGSLRLSKATGLAGRPWGHCVAALVVAALAVAALTHNARVAASVFSAGLSHQLRDSTRRGLWLYPPRGPKTPPLGYPVYLVAQALLPLLVALCLRGGVVSIC-VSCV-------RGFSCDRRRRRRRWPCAR 980
            EG+LL+ C+ SD LP  LLS FL SH A W+A VDN+SHAGIAA SWAVV+SLSPP S  AA+F  +ALP SPLHRC SCA  + T             + PP+XXXXXXX        P    + +   D ++           ++     AA  E G  G       SA+  +E  FAAC+GSALDLDHFLAAGS+RLS+AT LAGRPWGHCVAAL+VAA AVAALT NAR A  VFSAG +HQLRDSTRRGLWLYPPRG KTPP+ YP+YL+AQALLPL++A+CLR G  S C  SCV       RG  C RRRRR    C R
Sbjct:   12 EGILLILCVCSDFLPTTLLSSFLDSHDALWKAAVDNLSHAGIAASSWAVVISLSPPSS-GAANFPELALPGSPLHRCFSCARLLATGGRRRNHASNASHRPPPSXXXXXXXRPDTMDSSPKDLTSRSRYFDVESAEPSSPPPTISDQPALPMAARGERGAGGGCTARIPSAAVALEALFAACVGSALDLDHFLAAGSVRLSRATALAGRPWGHCVAALIVAAFAVAALTRNARAAVCVFSAGATHQLRDSTRRGLWLYPPRGAKTPPVSYPIYLLAQALLPLVMAMCLRSGHGSRCGYSCVQRNTRHRRGLPCTRRRRRGDVACVR 336
[Close]
BLAST of mRNA_C-linearis_contig84.16104.1 vs. uniprot
Match: D7FYK9_ECTSI (Transmembrane protein 267 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYK9_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 2.500e-44
Identity = 81/98 (82.65%), Postives = 88/98 (89.80%), Query Frame = 3 
Query:  534 SASGVVEVAFAACIGSALDLDHFLAAGSLRLSKATGLAGRPWGHCVAALVVAALAVAALTHNARVAASVFSAGLSHQLRDSTRRGLWLYPPRGPKTPP 827
            SA+  +EV FAAC+GSALDLDHFLAAGS+RLS+AT LAGRPWGHCVAAL+VAA AVAALT NAR A  VFSAG +HQLRDSTRRGLWLYPPRGPKTPP
Sbjct:   55 SAAAALEVLFAACVGSALDLDHFLAAGSVRLSRATALAGRPWGHCVAALIVAAFAVAALTRNARAAVCVFSAGATHQLRDSTRRGLWLYPPRGPKTPP 152
[Close]
BLAST of mRNA_C-linearis_contig84.16104.1 vs. uniprot
Match: A0A7S2W8E3_9STRA (Transmembrane protein 267 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8E3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.090e-18
Identity = 54/98 (55.10%), Postives = 62/98 (63.27%), Query Frame = 3 
Query:  588 DLDHFLAAGSLRLSKATGLAGRPWGHCVAALVVAALAVAALTHNARVAASVFSAGLSHQLRDSTRRGLWLYPPRGPKTPPLGYPVYLVAQALLPLLVA 881
            DLDHFLAAGSLRL  AT L+ RP+GH + A        A LT   R    V +A LSHQLRD+ RRG+WL+P     T PL +PVYLV    LPLLVA
Sbjct:    1 DLDHFLAAGSLRLQDATRLSHRPFGHALLAAGCLGALAALLTRQRRKGVLVATAILSHQLRDALRRGMWLFPLGS--TAPLPFPVYLVCLFSLPLLVA 96
[Close]
BLAST of mRNA_C-linearis_contig84.16104.1 vs. uniprot
Match: A0A024UG16_9STRA (Transmembrane protein 267 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UG16_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 6.260e-17
Identity = 61/119 (51.26%), Postives = 72/119 (60.50%), Query Frame = 3 
Query:  546 VVEVAFAACIGSALDLDHFLAAGSLRLSKATGLAGRPWGHCVAALV-VAALAVAALT--HNARVAASVFSAGLSHQLRDSTRRGLWLYPPRGPKTPPLGYPVYLVAQALLPLLVALCLR 893
            + E   A  +GS LD DHF+AA +  L  AT L  RPWGH V  ++ VA +A  AL    N R AA +F   LSHQLRDS RRGLW + P G  TPPL Y VYLV + L+PL V   LR
Sbjct:   15 IAEAIAAVAVGSLLDADHFVAARAFSLRAATSLNDRPWGHSVTFIIAVALIAWKALPAPFNLRGAALLFVCLLSHQLRDSFRRGLW-FAPLG-STPPLPYWVYLVLEVLVPLGVGTWLR 131
[Close]
BLAST of mRNA_C-linearis_contig84.16104.1 vs. uniprot
Match: A0A482SJG6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SJG6_9ARCH)

HSP 1 Score: 80.9 bits (198), Expect = 4.710e-14
Identity = 51/112 (45.54%), Postives = 68/112 (60.71%), Query Frame = 3 
Query:  552 EVAFAACIGSALDLDHFLAAGSLRLSKATGLAGRPWGHCVAALVVAALAVAALTHNARVAASVFSAGLSHQLRDSTRRGLWLYPPRGPKTPPLGY----PVYLVAQALLPLL 875
            E+A A     ALD+DHF+AAGS  L  AT L  RP+GH +A +   +L   A++ N+R A  +F A LSH LRDS +RGLWL+P     TPP+ +    P+YLV    + LL
Sbjct:   81 ELALAGFTSCALDVDHFIAAGSASLQDATNLPHRPFGHALAFVPCVSLLYYAVSRNSRTAKLLFVALLSHHLRDSMKRGLWLWP-MDYSTPPIPFYYVFPMYLVLTWAMRLL 191
[Close]
BLAST of mRNA_C-linearis_contig84.16104.1 vs. uniprot
Match: A0A067CX45_SAPPC (Transmembrane protein 267 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CX45_SAPPC)

HSP 1 Score: 80.9 bits (198), Expect = 8.280e-14
Identity = 50/103 (48.54%), Postives = 61/103 (59.22%), Query Frame = 3 
Query:  576 GSALDLDHFLAAGSLRLSKATGLAGRPWGHCVAALVVAALAVAA-----LTHNARVAASVFSAGLSHQLRDSTRRGLWLYPPRGPKTPPLGYPVYLVAQALLP 869
            GS LDLDHF+ A       AT L+ RP+GH V  + VAALA+       +    R  A V +  LSH LRDS RRGLW+ P  G  TPP+ YP+YLV + LLP
Sbjct:  121 GSLLDLDHFIVAAGWSFRAATSLSERPFGHAV--VFVAALALLTWWTCPVARRVRAVAFVLACLLSHHLRDSYRRGLWIAPVVG-STPPVPYPIYLVLEVLLP 220
[Close]
BLAST of mRNA_C-linearis_contig84.16104.1 vs. uniprot
Match: A0A293LI86_ORNER (Transmembrane protein 267 (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293LI86_ORNER)

HSP 1 Score: 72.4 bits (176), Expect = 3.600e-11
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 3 
Query:  585 LDLDHFLAAGSLRLSKATGLAGRPWGHCVAALVVAALAVAALT------HNARVAASVFSAGLSHQLRDSTRRGLWLYPPRGPKTPPLGYPVYLVAQA 860
            +D+DHF+A+GSL+L +AT L  RP+ HC   LV+  +AV  L       H  R+    F A ++H LRD+ RRGLWL+P     TPP+    Y V  A
Sbjct:   78 VDVDHFIASGSLKLKEATNLKNRPFLHCTTVLVLVVVAVVTLAKLLGRPHVFRIGMVTFVAVMTHHLRDALRRGLWLWP--FGSTPPVRPEAYYVGLA 173
[Close]
BLAST of mRNA_C-linearis_contig84.16104.1 vs. uniprot
Match: A0A131YR77_RHIAP (Transmembrane protein 267 n=3 Tax=Rhipicephalus TaxID=34630 RepID=A0A131YR77_RHIAP)

HSP 1 Score: 71.6 bits (174), Expect = 6.090e-11
Identity = 47/111 (42.34%), Postives = 63/111 (56.76%), Query Frame = 3 
Query:  546 VVEVAFAACIGSALDLDHFLAAGSLRLSKATGLAGRPWGHCVAALVVAALAVA------ALTHNARVAASVFSAGLSHQLRDSTRRGLWLYPPRGPKTPPLGYPVYLVAQA 860
            ++E   +   G A+D+DHFLAA SL++ KAT L  RP+ HC + ++V+   VA       L+   +VA     A  SH LRDS RRGLWL+P     T PL  PVY +  A
Sbjct:   61 LLESLLSGLFGCAVDVDHFLAARSLKIEKATNLQTRPFLHCSSVVLVSLSVVALLGRLLGLSQVYKVALIAIVAVASHHLRDSIRRGLWLWPLGS--TSPLKLPVYYIGLA 169
[Close]
BLAST of mRNA_C-linearis_contig84.16104.1 vs. uniprot
Match: A0A024GKZ5_9STRA (Transmembrane protein 267 n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GKZ5_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 6.440e-11
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 3 
Query:  582 ALDLDHFLAAGSLRLSKATGLAGRPWGHCVAALVVAALAV-AALTHNARVA-----ASVFSAGLSHQLRDSTRRGLWLYPPRGPKTPPLGYPVYLVAQALLPLLVA 881
            A+DLDHF+AAGS R+  AT L  RP+ H  A + +  + V      N +V      A ++ A  SHQLRD+ R G+WL+P     TPP+ Y +YL  Q LLPL +A
Sbjct:   78 AMDLDHFIAAGSFRIDAATNLKKRPFAHAFAFIALMCVFVWIQSAGNTKVVRFQRVALLWIALSSHQLRDAVRHGVWLWP--FGSTPPIPYALYLFIQVLLPLSIA 181
[Close]
BLAST of mRNA_C-linearis_contig84.16104.1 vs. uniprot
Match: A0A485LED5_9STRA (Aste57867_19392 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LED5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.070e-10
Identity = 51/113 (45.13%), Postives = 62/113 (54.87%), Query Frame = 3 
Query:  549 VEVAFAACIGSALDLDHFLAAGSLRLSKATGLAGRPWGHCVAALVVAALA---VAALTHNARVAASVFSAGLSHQLRDSTRRGLWLYPPRGPKTPPLGYPVYLVAQALLPLLV 878
            VE   A   GS LD DHF+AA +L L  AT L  RPWGH V  ++  A A   V  +    +  + V    +SHQLRDS RRGLWL P     T PL Y +YL  + LLP +V
Sbjct:   51 VEALGALATGSLLDSDHFVAAKALSLQAATSLQARPWGHSVTFVLFLAAACYCVLPVPMKRKGTSFVVVCLMSHQLRDSFRRGLWLAPLGS--TCPLPYALYLALELLLPYVV 161
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KR51_9PHAE9.570e-9155.83Transmembrane protein 267 n=1 Tax=Ectocarpus sp. C... [more]
D7FYK9_ECTSI2.500e-4482.65Transmembrane protein 267 n=1 Tax=Ectocarpus silic... [more]
A0A7S2W8E3_9STRA7.090e-1855.10Transmembrane protein 267 n=1 Tax=Rhizochromulina ... [more]
A0A024UG16_9STRA6.260e-1751.26Transmembrane protein 267 n=1 Tax=Aphanomyces inva... [more]
A0A482SJG6_9ARCH4.710e-1445.54Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A067CX45_SAPPC8.280e-1448.54Transmembrane protein 267 n=2 Tax=Saprolegnia TaxI... [more]
A0A293LI86_ORNER3.600e-1142.86Transmembrane protein 267 (Fragment) n=1 Tax=Ornit... [more]
A0A131YR77_RHIAP6.090e-1142.34Transmembrane protein 267 n=3 Tax=Rhipicephalus Ta... [more]
A0A024GKZ5_9STRA6.440e-1143.40Transmembrane protein 267 n=2 Tax=Albugo candida T... [more]
A0A485LED5_9STRA2.070e-1045.13Aste57867_19392 protein n=1 Tax=Aphanomyces stella... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:384185..387601 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue1.7e-14
Seed eggNOG ortholog157072.XP_008866583.1
Preferred nameC5orf28
Hectar predicted targeting categorysignal peptide
EggNOG OGs2CHIK@1,2S7YE@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1178
Cds size993
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930635.8673077-UTR-C-linearis_contig84:384184..3843251622930635.8673077-UTR-C-linearis_contig84:384184..384325Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 384185..384325 -
1690881171.4211223-UTR-C-linearis_contig84:384184..3843251690881171.4211223-UTR-C-linearis_contig84:384184..384325Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 384185..384325 -
1622930636.0091028-UTR-C-linearis_contig84:387557..3876011622930636.0091028-UTR-C-linearis_contig84:387557..387601Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 387558..387601 -
1690881171.5139117-UTR-C-linearis_contig84:387557..3876011690881171.5139117-UTR-C-linearis_contig84:387557..387601Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 387558..387601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930635.9063988-CDS-C-linearis_contig84:384325..3844321622930635.9063988-CDS-C-linearis_contig84:384325..384432Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 384326..384432 -
1690881171.4424255-CDS-C-linearis_contig84:384325..3844321690881171.4424255-CDS-C-linearis_contig84:384325..384432Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 384326..384432 -
1622930635.923724-CDS-C-linearis_contig84:384886..3851271622930635.923724-CDS-C-linearis_contig84:384886..385127Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 384887..385127 -
1690881171.4596717-CDS-C-linearis_contig84:384886..3851271690881171.4596717-CDS-C-linearis_contig84:384886..385127Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 384887..385127 -
1622930635.94542-CDS-C-linearis_contig84:385621..3860661622930635.94542-CDS-C-linearis_contig84:385621..386066Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 385622..386066 -
1690881171.4736886-CDS-C-linearis_contig84:385621..3860661690881171.4736886-CDS-C-linearis_contig84:385621..386066Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 385622..386066 -
1622930635.9693112-CDS-C-linearis_contig84:386935..3870641622930635.9693112-CDS-C-linearis_contig84:386935..387064Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 386936..387064 -
1690881171.4869514-CDS-C-linearis_contig84:386935..3870641690881171.4869514-CDS-C-linearis_contig84:386935..387064Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 386936..387064 -
1622930635.9897566-CDS-C-linearis_contig84:387486..3875571622930635.9897566-CDS-C-linearis_contig84:387486..387557Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 387487..387557 -
1690881171.5012314-CDS-C-linearis_contig84:387486..3875571690881171.5012314-CDS-C-linearis_contig84:387486..387557Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 387487..387557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16104.1prot_C-linearis_contig84.16104.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 384326..387557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16104.1

>prot_C-linearis_contig84.16104.1 ID=prot_C-linearis_contig84.16104.1|Name=mRNA_C-linearis_contig84.16104.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=331bp
MGHWPLQVVFAFGEGVLLLACIYSDLLPRALLSGFLRSHGAAWEALVDNV
SHAGIAAVSWAVVVSLSPPPSPTAASFRLIALPASPLHRCLSCALRMYTK
APPTPTPTPTPRTQRRTPEPGSALAEASCGDYDAVVVCQQARPGGEEKGG
RSAAHKEAGRKGASASGVVEVAFAACIGSALDLDHFLAAGSLRLSKATGL
AGRPWGHCVAALVVAALAVAALTHNARVAASVFSAGLSHQLRDSTRRGLW
LYPPRGPKTPPLGYPVYLVAQALLPLLVALCLRGGVVSICVSCVRGFSCD
RRRRRRRWPCARRCSGGGTEDTHRSALLPL*
back to top

mRNA from alignment at C-linearis_contig84:384185..387601-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16104.1 ID=mRNA_C-linearis_contig84.16104.1|Name=mRNA_C-linearis_contig84.16104.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3417bp|location=Sequence derived from alignment at C-linearis_contig84:384185..387601- (Chordaria linearis ClinC8C monoicous)
CTCCGGCCTACGGTGGGGGAGAGGTGCGCTACAGTTCTAAAAATATGGGC
CATTGGCCGCTGCAGGTCGTCTTCGCCTTTGGAGAAGGAGTGCTCCTCCT
TGCGTGCATTTACAGGTGCTGGGTGTGACCTCTGCCGACAATTCGATCTC
TTCTTCTCTCGTGTACACATCTCTCTCAGCAACAAGACGAAATACCCCGA
ACGCTGTCATGCTCCAGCCGGTTGACGCAGGGCAACAGCAACAGCAGTAC
GTTCATGGTCGGGTTGCCGTATTTGGTGGTTAAGACTGCGATGTTTCCTC
CGATTTTGCGAAAAAAATTGGTAAAATACTAAATACCACATAGCGAAAAT
GGCCTACCTACACAAGACACACGGAGGTATCCTACATATATGTATGTTCA
ACGCAGACATGGCCGAGGTGCCGAGATGCCGACAAGACAATGCAACCTGG
CGGGCAAAGAAGTGACCTCTTTTCGCTCTGCTTCGACGCGTGAACCCACC
CCGCTCGCGAAACTCCACTGCTTCCTGGACGATTCAGTGATCTGCTCCCA
AGGGCGCTGCTGTCCGGCTTTCTCCGCTCGCATGGTGCGGCATGGGAAGC
TCTCGTTGACAACGTGTCTCACGCGGGCATCGCCGCCGTGTCTTGGGCGG
TCGTCGTGTCGCTCAGGTGCGTACATGCAGCATACAAACCTTCAAAGCGG
AGCACGCTCATATCGCGGAACGCAACAGAGGGTGCTTGCTTTCTGCCCCG
CCCACTATCACCGCGCACACAATGGCATGTGTGTGTGTGTGTGTGTGTGT
GTGTTTTCGTCCCATTTATTTTGGCGACAGTCCTTTTCCGATCAAGGCGA
GACGTGTACTACACGTTGCGGTGTATTTAGAGTACTACACTTGTTCAGTG
TATTTTTCTGTACAACTAGAACCAACCGGGGTCACACAGGAGGGGGTAAA
CACTGGGGCTTTTTTCTTCTTTTTCTGTTTCTTTTTCGCCCCACCTCACC
TTCCTCCTGCGGTGCCTGCCTTGGATTTTATCGCGAGAAGGGTGCAGCCA
CCCCTTTCCCTCGTCAACGTCTAAGTCGAAGTTTGGTACTCACGAGCTTT
TTCAGCCATGTTATCGCTTTCACCTGCAAAGTCGCAAAATATTCACCTTT
GCTTGGAATTGAACTCCAGACTTTCCTGCTAGTGGGTTCGAGGTTAGACC
ACTAGTCCACCGGGGCGACCGGCTATGTAGGCACCGCAATTTCGTGAAAT
CTACCGACTAAATTCACGTTGTTCGTGCTGCAGGCGACTAGCTGTGCGCA
TGCGCATCCCCGTAATCAATCTGCAATCGCTCCCTACAACCTGCACGATT
CGAAGGCGAGCTCTGCCATCACAGGTACAAGCATGCCGAAAGCTGTAAGC
TGCGGCAGTCAAGCCCCGCTCTCACGGCTACACAGACCGTTTCACCCGCC
TGCTGCACCACCCCCTTATCGCACCCCCGACTGCCTTCGACTGCCCTTTG
TTGCCCGCGTCCGCCTGCTTTGCTCGACGCAACAGCCCCCCGCCATCTCC
AACAGCGGCAAGTTTCCGGTTGATCGCTTTGCCAGCAAGTCCCCTGCATC
GGTGCCTCTCTTGCGCCCTCAGGATGTACACCAAAGCACCACCAACCCCA
ACCCCAACCCCAACCCCACGAACACAACGGAGAACACCGGAACCAGGAAG
CGCTTTGGCGGAGGCTAGTTGTGGAGATTATGATGCAGTGGTGGTGTGCC
AACAGGCGCGCCCAGGGGGAGAAGAGAAAGGAGGAAGATCAGCGGCGCAC
AAAGAAGCAGGAAGGAAAGGAGCATCGGCGTCCGGTGTAGTGGAAGTTGC
GTTTGCTGCTTGCATCGGCAGCGCGCTGGACCTCGATCATTTCCTGGCCG
CTGGATCGTTGCGGCTGTCAAAGGCGACGGGCTTGGCCGGGCGTCCGTGG
GGCCATTGCGTGGCGGCGCTCGTTGTAGCGGTGAGAAGAGGCACGGAGTT
TGCCAGCGGTGTTGAGGAATGTCGGGCGGAGCTTTGAGGGTAGCTTTTGC
TCTCAGAGCCTTTTCGAATGCTGTGCAGCGGGAAGCAATGCAACATCATT
CGAGCGGCGATTGTGGTTTCTGTCACGATATGCTCCACGTCAGCTGGCCT
ACTGATGATGTGATGGGGCACGGTGCCATTTGCAATGGCAGATAAGGGCC
CGCTTTCGCTTCGATCGCGCCGTACTTCGTATCTAGGAACAAGTGACGCG
ATGGCTGGTCTCGATGGGCGGGGGGGTTGGTGGATCGGCGATTAAGCAAG
GGAAACCACGTGCAGGGTTTTTCCCTTCTCCCTCCGCCCGCACCTTCCGC
TTGCCTTCGATTGCCTTCGATTGATGCCAATCTGTCCTCTTGACGTCCCT
CTCTCGCCGTTCGCGCTCCTCGTTGCTGCTGTTTTGCACCCGCCGCCACA
TACCTTGCCATCGATGCGTTCAAGGCCTTGGCTGTGGCAGCGTTGACCCA
CAACGCTCGAGTCGCCGCCTCCGTTTTCTCGGCCGGCCTGTCGCATCAGC
TGCGCGACTCCACGCGCCGCGGTTTGTGGCTGTACCCGCCCCGAGGACCC
AAAACGCCCCCCCTGGGATACCCGGTCTACCTGGTGGCGCAGGCGCTGCT
GCCGCTTCTGGTAGCTCTGTGTCTACGGGGTGGCGTGGTTTCGATATGCG
TTAGCTGCGTTAGAGGTGAGATCCCTGCGTTCCTTGCGTGGTCTGAACCT
CTGTTTTCGTTTTTTTTTTCCTTTGTGTGGGTGTTTCGGTTCGCCAGAGG
GTCTTGTCTGCTTCATCCCGAGGGAATACTCGGGCGTTGCCCAGCATTGT
TGAGGGAGGAAATTGAACGGTACATATATTGTGCATGTCTCAGAAATATA
TTGCTCGACACACGAGTCAACAGCAGTTGTGTGCGTCATGTGTCATTCGA
GCGGTTTCGTACGACGCACGAGACGCAGAAGAATTTGCGCGCTGGCTCCT
CCCCGCGTTTTTCTTTGCACAGAAAGTGGGGATTGCCGGCAGAAAATGTC
GTTTACGGCTCTTTGTGATGCATGCTGAATACCAAAGCTTGTGCGCTGCT
TTCTGATCCTCCCGTACAATGTGCTCCGTTGATACTTCTGCCATACAATC
GTTTTCGGGCGCCCAGCAGGATTTTCCTGTGACCGAAGGCGTCGGAGACG
GCGGTGGCCTTGTGCGCGTCGTTGTAGTGGGGGGGGCACAGAAGATACAC
ATAGAAGCGCCCTCCTCCCTTTGTAGACGGTTGGGGCGGAGGAGGGCATT
TGTGGTGTCACTACTGCTGTGGCAGTCGCTACACGAGCCTATTGTACTGT
CGGAAGTTCAGCACATGGTAGTTGGAATCAAGAGGTCTCAACCAAGACAT
GGCGGCGGCGAGAGGGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig84:384185..387601-

>mRNA_C-linearis_contig84.16104.1 ID=mRNA_C-linearis_contig84.16104.1|Name=mRNA_C-linearis_contig84.16104.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at C-linearis_contig84:384185..387601- (Chordaria linearis ClinC8C monoicous)
ATGGGCCATTGGCCGCTGCAGGTCGTCTTCGCCTTTGGAGAAGGAGTGCT
CCTCCTTGCGTGCATTTACAGATGGGCCATTGGCCGCTGCAGGTCGTCTT
CGCCTTTGGAGAAGGAGTGCTCCTCCTTGCGTGCATTTACAGTGATCTGC
TCCCAAGGGCGCTGCTGTCCGGCTTTCTCCGCTCGCATGGTGCGGCATGG
GAAGCTCTCGTTGACAACGTGTCTCACGCGGGCATCGCCGCCGTGTCTTG
GGCGGTCGTCGTGTCGCTCAGTGATCTGCTCCCAAGGGCGCTGCTGTCCG
GCTTTCTCCGCTCGCATGGTGCGGCATGGGAAGCTCTCGTTGACAACGTG
TCTCACGCGGGCATCGCCGCCGTGTCTTGGGCGGTCGTCGTGTCGCTCAG
CCCCCCGCCATCTCCAACAGCGGCAAGTTTCCGGTTGATCGCTTTGCCAG
CAAGTCCCCTGCATCGGTGCCTCTCTTGCGCCCTCAGGATGTACACCAAA
GCACCACCAACCCCAACCCCAACCCCAACCCCACGAACACAACGGAGAAC
ACCGGAACCAGGAAGCGCTTTGGCGGAGGCTAGTTGTGGAGATTATGATG
CAGTGGTGGTGTGCCAACAGGCGCGCCCAGGGGGAGAAGAGAAAGGAGGA
AGATCAGCGGCGCACAAAGAAGCAGGAAGGAAAGGAGCATCGGCGTCCGG
TGTAGTGGAAGTTGCGTTTGCTGCTTGCATCGGCAGCGCGCTGGACCTCG
ATCATTTCCTGGCCGCTGGATCGTTGCGGCTGTCAAAGGCGACGGGCTTG
GCCGGGCGTCCGTGGGGCCATTGCGTGGCGGCGCTCGTTGTAGCGCCCCC
CGCCATCTCCAACAGCGGCAAGTTTCCGGTTGATCGCTTTGCCAGCAAGT
CCCCTGCATCGGTGCCTCTCTTGCGCCCTCAGGATGTACACCAAAGCACC
ACCAACCCCAACCCCAACCCCAACCCCACGAACACAACGGAGAACACCGG
AACCAGGAAGCGCTTTGGCGGAGGCTAGTTGTGGAGATTATGATGCAGTG
GTGGTGTGCCAACAGGCGCGCCCAGGGGGAGAAGAGAAAGGAGGAAGATC
AGCGGCGCACAAAGAAGCAGGAAGGAAAGGAGCATCGGCGTCCGGTGTAG
TGGAAGTTGCGTTTGCTGCTTGCATCGGCAGCGCGCTGGACCTCGATCAT
TTCCTGGCCGCTGGATCGTTGCGGCTGTCAAAGGCGACGGGCTTGGCCGG
GCGTCCGTGGGGCCATTGCGTGGCGGCGCTCGTTGTAGCGGCCTTGGCTG
TGGCAGCGTTGACCCACAACGCTCGAGTCGCCGCCTCCGTTTTCTCGGCC
GGCCTGTCGCATCAGCTGCGCGACTCCACGCGCCGCGGTTTGTGGCTGTA
CCCGCCCCGAGGACCCAAAACGCCCCCCCTGGGATACCCGGTCTACCTGG
TGGCGCAGGCGCTGCTGCCGCTTCTGGTAGCTCTGTGTCTACGGGGTGGC
GTGGTTTCGATATGCGTTAGCTGCGTTAGAGGCCTTGGCTGTGGCAGCGT
TGACCCACAACGCTCGAGTCGCCGCCTCCGTTTTCTCGGCCGGCCTGTCG
CATCAGCTGCGCGACTCCACGCGCCGCGGTTTGTGGCTGTACCCGCCCCG
AGGACCCAAAACGCCCCCCCTGGGATACCCGGTCTACCTGGTGGCGCAGG
CGCTGCTGCCGCTTCTGGTAGCTCTGTGTCTACGGGGTGGCGTGGTTTCG
ATATGCGTTAGCTGCGTTAGAGGATTTTCCTGTGACCGAAGGCGTCGGAG
ACGGCGGTGGCCTTGTGCGCGTCGTTGTAGTGGGGGGGGCACAGAAGATA
CACATAGAAGCGCCCTCCTCCCTTTGTAGGATTTTCCTGTGACCGAAGGC
GTCGGAGACGGCGGTGGCCTTGTGCGCGTCGTTGTAGTGGGGGGGGCACA
GAAGATACACATAGAAGCGCCCTCCTCCCTTTGTAG
back to top