mRNA_C-linearis_contig84.16095.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16095.1
Unique NamemRNA_C-linearis_contig84.16095.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:193037..194717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.285449-CDS-C-linearis_contig84:193036..1932031622930630.285449-CDS-C-linearis_contig84:193036..193203Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 193037..193203 -
1690881168.2684572-CDS-C-linearis_contig84:193036..1932031690881168.2684572-CDS-C-linearis_contig84:193036..193203Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 193037..193203 -
1622930630.306239-CDS-C-linearis_contig84:194659..1947171622930630.306239-CDS-C-linearis_contig84:194659..194717Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 194660..194717 -
1690881168.2781663-CDS-C-linearis_contig84:194659..1947171690881168.2781663-CDS-C-linearis_contig84:194659..194717Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 194660..194717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16095.1prot_C-linearis_contig84.16095.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 193037..194717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16095.1

>prot_C-linearis_contig84.16095.1 ID=prot_C-linearis_contig84.16095.1|Name=mRNA_C-linearis_contig84.16095.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=75bp
LRTEDASQALDDSLHSNEEGAGSWRTSGTFAERTPHSPVSRSYFNKTWKK
SRPLVVKVTRFGDFMKCTELSAKLH
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mRNA from alignment at C-linearis_contig84:193037..194717-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16095.1 ID=mRNA_C-linearis_contig84.16095.1|Name=mRNA_C-linearis_contig84.16095.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1681bp|location=Sequence derived from alignment at C-linearis_contig84:193037..194717- (Chordaria linearis ClinC8C monoicous)
CTACGGACAGAAGATGCCTCACAAGCCTTGGACGATTCTCTACACAGCAA
CGAAGAAGGTGAGGATTTAGGCATTGAGTGAGGTATCACATGGGTACCCC
CATAGGCATGTGCCTCCCCCCAATAGCTCTTCACCCTGGAGGCATTTGCA
ATTCTTCGATGACCTCTCACACGTGTTGCAGTCCGTAGGTAAAAGGCTGC
TTTTGTTTTCGGACAGAAAGTGCCCTGTCTGCGGAGCCCCGAATCTCGCA
TAGTCATCATGCGAATCGACAGCAATCTTCAAACTCCGGCTGTATTGTCG
ATCCGAATTTTGAATTTTCGCTAGCTAGGGTGTTTTCCAAACTACATCCT
CTAAGACGCGCACCCACCAAGTATCGTGCGATTTGGGCTCTAAACCAGAG
AACAAACAGGACCAAAGCTCAGTGCGGGGGTGTGGTATCTTCTAAGTTTG
CTCTATCTTGACCCGCGTTTTGTAGGCAACTCTGCAATGATGATTACGCA
TGCTGTAGGGCCGATCTGAATTTTCGCCAGGGTGTTTTCGAAACTCCATC
CACCAAGACGCCCACCCTCCACGTAGCGTTTGTTTTAAGCGCTAAACCAG
AGAACAAAACAGACAGGATCAAAGGTGGTGCTCTCCCCAGCACGCGGCAG
CAACCTGTGACCCAACAATTTCAACACGTTTCCGCTGCTTCTCTCGGATG
TAGTGTATGACTTGATTGAAGCTCCTGCAATTTTTCGAGTCGGTTCTAGC
TCTCAGCGTGAAGAACGGTGTGGTTGAGTGTGCCTTAGGCGATCAGCCGC
CGCCGAGGGGCTCCGCCGGTCGGTGTCGCTGATACAGGTACCCCCACCAT
ATTTTTGGCTGGATTTTTTTTTCCTATGGGGTGAAACACGTGTGCTCCCG
ACGGGTGGATTTCGATTACGGGGGGCCCCGGGGTTCCAAATTTTCCACGA
ATTTCCCCAGGGATACATACGGATATGAGTAGCCTTGCTTTGCTTTAGAG
TCTGCTTTTAGTGTCTCTCGAAGCACTAGAATGTCGCTGGTGGTGAAAGT
GACATATACTAGTACAAATCAGCGCTTTATCTGGGAGGTGGGCCAGACTG
GACCTATTGCTACTCTATTGGTACTGTGGACGACTCCCCGGGTTAGTAGT
ATTGTACCTGGATCTTGCAAAGGGGGGCGGACTCCGGTAACTTAGGTTTG
CCAGTGCGGTGAAAACCCTTTATCTGCTCTCTCTCGCTGTCTCTCTCTGT
CGATCACCGTTGCGGGAGTCCAATTACAGCGCCCGCTCCGGAAGGACATT
TCCGATATAGTTGTCCCCGGCCCGTCACCCTTCAGTACCTACAGCAACGG
TGTGGGATGAGAGCGCCCAGAACTAGACCCACCGTCCCCAACCCGTCACC
CCCGTTTGGGTATGGGAAGTGGCGACACCGTTATTTGTTGTCTACATACA
TACATACCTAGACTAAAGATACGCTGTGAATGCTGTATACCCGACTACCG
TCCACGATTCGTAGGAGCGGGTTCATGGAGAACGAGCGGCACGTTCGCGG
AGAGAACGCCTCACTCACCTGTCAGCAGGTCGTACTTCAACAAGACGTGG
AAGAAATCTCGACCACTCGTCGTGAAGGTCACGAGGTTTGGAGACTTCAT
GAAGTGCACGGAGCTGAGCGCGAAGCTGCAC
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Coding sequence (CDS) from alignment at C-linearis_contig84:193037..194717-

>mRNA_C-linearis_contig84.16095.1 ID=mRNA_C-linearis_contig84.16095.1|Name=mRNA_C-linearis_contig84.16095.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at C-linearis_contig84:193037..194717- (Chordaria linearis ClinC8C monoicous)
CTACGGACAGAAGATGCCTCACAAGCCTTGGACGATTCTCTACACAGCAA
CGAAGAAGCTACGGACAGAAGATGCCTCACAAGCCTTGGACGATTCTCTA
CACAGCAACGAAGAAGGAGCGGGTTCATGGAGAACGAGCGGCACGTTCGC
GGAGAGAACGCCTCACTCACCTGTCAGCAGGTCGTACTTCAACAAGACGT
GGAAGAAATCTCGACCACTCGTCGTGAAGGTCACGAGGTTTGGAGACTTC
ATGAAGTGCACGGAGCTGAGCGCGAAGCTGCACGAGCGGGTTCATGGAGA
ACGAGCGGCACGTTCGCGGAGAGAACGCCTCACTCACCTGTCAGCAGGTC
GTACTTCAACAAGACGTGGAAGAAATCTCGACCACTCGTCGTGAAGGTCA
CGAGGTTTGGAGACTTCATGAAGTGCACGGAGCTGAGCGCGAAGCTGCAC
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