mRNA_C-linearis_contig84.16094.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16094.1
Unique NamemRNA_C-linearis_contig84.16094.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig84.16094.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.270e-39
Identity = 63/83 (75.90%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    1 SNLVCTVIWLALERLSKLWAKPGKTFHIKLLHVQLDNCVGENKNNIVMAFLGGLIASRVIGRAEVHFLMVGHTHIEIDQVFSR 249
            SNLVCT +WLAL+RLS +W KPG+ F+IK LH+QLDNCVGENKNNIV+AF+GGL+A+ VIG AEV FL+VGHTHI+IDQVFSR
Sbjct:   11 SNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 93
[Close]
BLAST of mRNA_C-linearis_contig84.16094.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.840e-37
Identity = 63/83 (75.90%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:    1 SNLVCTVIWLALERLSKLWAKPGKTFHIKLLHVQLDNCVGENKNNIVMAFLGGLIASRVIGRAEVHFLMVGHTHIEIDQVFSR 249
            SNLVCT +WLAL+RLS +W KPG+ F+IK LH+QLDNCVGENKNNIV+AF+GGL+A+ VIG AEV FL+VGHTHI+IDQVFSR
Sbjct:   11 SNLVCTALWLALKRLSAMWTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 93
[Close]
BLAST of mRNA_C-linearis_contig84.16094.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.250e-36
Identity = 63/83 (75.90%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    1 SNLVCTVIWLALERLSKLWAKPGKTFHIKLLHVQLDNCVGENKNNIVMAFLGGLIASRVIGRAEVHFLMVGHTHIEIDQVFSR 249
            SNLVCT +WLAL+RLS++W KPG+ FHIK LH+QLDNCVGENKNNIVMAF+GGL+A+ VIG AEV FL+VGHTH + DQVFSR
Sbjct:  238 SNLVCTALWLALKRLSEMWNKPGERFHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFSR 320
[Close]
BLAST of mRNA_C-linearis_contig84.16094.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.350e-36
Identity = 62/83 (74.70%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 SNLVCTVIWLALERLSKLWAKPGKTFHIKLLHVQLDNCVGENKNNIVMAFLGGLIASRVIGRAEVHFLMVGHTHIEIDQVFSR 249
            SNL CT +WLAL+RLS +W KPG+ FHIK  H+QLDNCVGENKNNIVMAF+GGL+A+ VIG AEV FL++GHTHI+IDQVFSR
Sbjct:   11 SNLECTTLWLALKRLSAMWTKPGERFHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFSR 93
[Close]
BLAST of mRNA_C-linearis_contig84.16094.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 4.350e-35
Identity = 62/83 (74.70%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    1 SNLVCTVIWLALERLSKLWAKPGKTFHIKLLHVQLDNCVGENKNNIVMAFLGGLIASRVIGRAEVHFLMVGHTHIEIDQVFSR 249
            SNLVCT +WLAL+RLS +  KPG+ F+IK LH+QLDNCVGENKNNIV+AF+GGL+A+ VIG AEV FL+VGHTHI+IDQVFSR
Sbjct:  123 SNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 205
[Close]
BLAST of mRNA_C-linearis_contig84.16094.1 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 7.320e-32
Identity = 58/83 (69.88%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 SNLVCTVIWLALERLSKLWAKPGKTFHIKLLHVQLDNCVGENKNNIVMAFLGGLIASRVIGRAEVHFLMVGHTHIEIDQVFSR 249
            SNLVCT +WLAL+RLS +WAKPG+ F+IK LH+QL NCVGE KNNIV+AF+GGL+A+ V+  AEV FL+VGHT I+ID VFSR
Sbjct:  285 SNLVCTALWLALKRLSAMWAKPGQRFYIKRLHLQLHNCVGEKKNNIVLAFIGGLVAAGVVVSAEVCFLIVGHTLIKIDHVFSR 367
[Close]
BLAST of mRNA_C-linearis_contig84.16094.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.220e-18
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:   52 LWAKPGKTFHIKLLHVQLDNCVGENKNNIVMAFLGGLIASRVIGRAEVHFLMVGHTHIEIDQVFSR 249
            ++   GK  +I    +Q+DNCV ENKN+IV+ +LG L+A  +IG  EV F+ VGHTHI+IDQVFSR
Sbjct:    1 MYVPVGKRPYIYRFTIQVDNCVSENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTHIKIDQVFSR 66
[Close]
BLAST of mRNA_C-linearis_contig84.16094.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.000e-17
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:  106 DNCVGENKNNIVMAFLGGLIASRVIGRAEVHFLMVGHTHIEIDQVFSR 249
            DNCVGENKNNIV+AF+GGL+A+ VIG AEV FL+VGHTHI+IDQVFSR
Sbjct:  213 DNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 260
[Close]
BLAST of mRNA_C-linearis_contig84.16094.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 3.850e-15
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1 
Query:    4 NLVCTVIWLALERL-SKLWAKPGKTFH--IKLLHVQLDNCVGENKNNIVMAFLGGLIASRVIGRAEVHFLMVGHTHIEIDQVFSR 249
            NL CT   LA+ R+  K    P       I+  H Q+DNCV ENKNN  + + G L+A+ V+   E+HF+MVGHTH +IDQVFSR
Sbjct:  188 NLACTAAHLAITRIIDKYHDSPPHPSGCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSR 272
[Close]
BLAST of mRNA_C-linearis_contig84.16094.1 vs. uniprot
Match: A0A7M5X9T5_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5X9T5_9CNID)

HSP 1 Score: 73.6 bits (179), Expect = 1.430e-13
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:    1 SNLVCTVIWLALERLSKLWAKPGKTFHIKLLHVQLDNCVGENKNNIVMAFLGGLIASRVIGRAEVHFLMVGHTHIEIDQVFSR 249
            SNL C +I   L R++K      K     +L++QLDNC  ENKN  VMAF   L+  R++ +  + FLMVGHTH +IDQ FS 
Sbjct:   51 SNLTCNIITEVLLRMTK-----DKNTLPPVLYIQLDNCWSENKNQFVMAFCALLVGWRLVDKVRLSFLMVGHTHEDIDQTFSN 128
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KN27_9PHAE2.270e-3975.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE1.840e-3775.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE1.250e-3675.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE2.350e-3674.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA02_9PHAE4.350e-3574.70Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTH9_9PHAE7.320e-3269.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA0_9PHAE1.220e-1854.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXN7_9PHAE1.000e-1781.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE3.850e-1548.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7M5X9T5_9CNID1.430e-1345.78Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:186782..187033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score70.1
Seed ortholog evalue5.6e-10
Seed eggNOG ortholog7739.XP_002587783.1
Preferred nameEXOC1
KEGG koko:K19983
Hectar predicted targeting categorysignal peptide
GOsGO:0000145,GO:0002791,GO:0002793,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005938,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0008289,GO:0009894,GO:0009898,GO:0009987,GO:0010506,GO:0016020,GO:0016192,GO:0016241,GO:0016324,GO:0017016,GO:0017048,GO:0017049,GO:0019222,GO:0019899,GO:0023052,GO:0031267,GO:0031323,GO:0031329,GO:0031503,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0034629,GO:0035091,GO:0035556,GO:0043167,GO:0043168,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044459,GO:0044464,GO:0045177,GO:0046903,GO:0048015,GO:0048017,GO:0048193,GO:0048518,GO:0048522,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051601,GO:0051641,GO:0051716,GO:0065007,GO:0070201,GO:0070727,GO:0071944,GO:0090087,GO:0098552,GO:0098562,GO:0098590,GO:0098592,GO:0098876,GO:0099023,GO:0099568,GO:1901981,GO:1902936,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.Exocyst complex component
EggNOG OGs38EC2@33154,3B9M0@33208,3CWXP@33213,48923@7711,KOG2148@1,KOG2148@2759
COG Functional cat.U
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons1
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930633.5442348-CDS-C-linearis_contig84:186781..1870331622930633.5442348-CDS-C-linearis_contig84:186781..187033Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 186782..187033 -
1690881170.102553-CDS-C-linearis_contig84:186781..1870331690881170.102553-CDS-C-linearis_contig84:186781..187033Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 186782..187033 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16094.1prot_C-linearis_contig84.16094.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 186782..187033 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16094.1

>prot_C-linearis_contig84.16094.1 ID=prot_C-linearis_contig84.16094.1|Name=mRNA_C-linearis_contig84.16094.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=84bp
SNLVCTVIWLALERLSKLWAKPGKTFHIKLLHVQLDNCVGENKNNIVMAF
LGGLIASRVIGRAEVHFLMVGHTHIEIDQVFSR*
back to top

mRNA from alignment at C-linearis_contig84:186782..187033-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16094.1 ID=mRNA_C-linearis_contig84.16094.1|Name=mRNA_C-linearis_contig84.16094.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=252bp|location=Sequence derived from alignment at C-linearis_contig84:186782..187033- (Chordaria linearis ClinC8C monoicous)
AGCAATCTCGTCTGTACGGTAATATGGCTAGCCCTTGAGCGACTATCTAA
GTTGTGGGCCAAGCCGGGCAAGACGTTCCACATCAAGCTTCTCCACGTGC
AGCTGGACAACTGCGTCGGCGAGAATAAGAACAACATCGTCATGGCCTTC
CTCGGCGGTCTGATCGCGTCGCGAGTTATCGGCAGAGCAGAGGTCCATTT
CCTCATGGTGGGGCACACACACATCGAGATCGACCAGGTGTTTTCACGGT
GA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig84:186782..187033-

>mRNA_C-linearis_contig84.16094.1 ID=mRNA_C-linearis_contig84.16094.1|Name=mRNA_C-linearis_contig84.16094.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at C-linearis_contig84:186782..187033- (Chordaria linearis ClinC8C monoicous)
AGCAATCTCGTCTGTACGGTAATATGGCTAGCCCTTGAGCGACTATCTAA
GTTGTGGGCCAAGCCGGGCAAGACGTTCCACATCAAGCTTCTCCACGTGC
AGCTGGACAACTGCGTCGGCGAGAATAAGAACAACATCGTCATGGCCTTC
CTCGGCGGTCTGATCGCGTCGCGAGTTATCGGCAGAGCAGAGGTCCATTT
CCTCATGGTGGGGCACACACACATCGAGATCGACCAGGTGTTTTCACGGT
GAAGCAATCTCGTCTGTACGGTAATATGGCTAGCCCTTGAGCGACTATCT
AAGTTGTGGGCCAAGCCGGGCAAGACGTTCCACATCAAGCTTCTCCACGT
GCAGCTGGACAACTGCGTCGGCGAGAATAAGAACAACATCGTCATGGCCT
TCCTCGGCGGTCTGATCGCGTCGCGAGTTATCGGCAGAGCAGAGGTCCAT
TTCCTCATGGTGGGGCACACACACATCGAGATCGACCAGGTGTTTTCACG
GTGA
back to top