mRNA_C-linearis_contig84.16093.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig84.16093.1
Unique NamemRNA_C-linearis_contig84.16093.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig84.16093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig84contigC-linearis_contig84:156435..158077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size198
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig84.16093.1prot_C-linearis_contig84.16093.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig84 156435..158047 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.203336-CDS-C-linearis_contig84:156434..1565831622930630.203336-CDS-C-linearis_contig84:156434..156583Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 156435..156583 -
1690881168.227451-CDS-C-linearis_contig84:156434..1565831690881168.227451-CDS-C-linearis_contig84:156434..156583Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 156435..156583 -
1622930630.2213082-CDS-C-linearis_contig84:158028..1580471622930630.2213082-CDS-C-linearis_contig84:158028..158047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 158029..158047 -
1690881168.239287-CDS-C-linearis_contig84:158028..1580471690881168.239287-CDS-C-linearis_contig84:158028..158047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig84 158029..158047 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930630.2412572-UTR-C-linearis_contig84:158047..1580771622930630.2412572-UTR-C-linearis_contig84:158047..158077Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 158048..158077 -
1690881168.2503135-UTR-C-linearis_contig84:158047..1580771690881168.2503135-UTR-C-linearis_contig84:158047..158077Chordaria linearis ClinC8C monoicousUTRC-linearis_contig84 158048..158077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig84.16093.1

>prot_C-linearis_contig84.16093.1 ID=prot_C-linearis_contig84.16093.1|Name=mRNA_C-linearis_contig84.16093.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=56bp
MYYLLAMHAGGVHPRHERGPPFVEGVPGKHKTIPNTYPLISSATPRRLSN
IPSYLR
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mRNA from alignment at C-linearis_contig84:156435..158077-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig84.16093.1 ID=mRNA_C-linearis_contig84.16093.1|Name=mRNA_C-linearis_contig84.16093.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1643bp|location=Sequence derived from alignment at C-linearis_contig84:156435..158077- (Chordaria linearis ClinC8C monoicous)
AACCGTAGATGGTGCTGCTCGCACTCGTTCATGTATTATCTTCTTGCAAG
TAAACTCTCCGTTCCCTCGTCTTCCGACCATGGCCATGGCCGGCCCGATG
TGGGGAGGGTTTTTCTGGCGGTGTAAGGCCGGACTCACCCTCAAGGAGTG
ATTCCTTCTTGCTACTACCCCGGTCCTCACCGTCCGTGGTGTGGTGGTAG
AGTTGGGTCAGCACGGCGGTGCATCAGGCACTCACCCCCCCTGTTTTTCA
GTATTTATCTGCGTCATCGTATAGATAGCCTTTCTGCGTGAGCGGACAGG
CGTGGTTAGTGTGTGCGCGAAGGCAGATGGACACTGTGGCCGAAAGCTGG
TTGCACCCAGTGTGCACCGGTGTGTAGGATATGGACTCGGCGACAAGGAT
GGAGGGGAGGTCGCTGACGGATGGATGTGATCAGTAAGGTCGGATCCTCT
GTTCGAGAAATCAAGAGATCAGCACCGGAGCGCATCATGAAGGAGGAGGG
ATACCGCACGAAGGAGCAGAAGGGGCGACGGACTAACAACAACAACGAGA
GATCGCGAGACCATGGACGCGGGCGAGGATGGACGAGAGCGCTTGGAGCT
GGCCTCGTGAAAGGAAGAGCAAAGAACAAGAGAGAGGAGCAAGAAGATGG
AATTTTCTACCGATTGTGTCAAAAAATTGTTTTGCTCTTGCATTAGATAA
ATACATGCAGAGGGTCTTTTATAGGACACTCCGGACTAACCCTGTGTACG
CCGATGATACGCACTAGGCCGTGAGTCTAGATTGTGAGTAGCAGGTGAAC
ACATGACTTGTCTGTCGCATTTTGTTAGACTTGCATTTGTTTTGGCCCGA
GCGTTCGAAGAACACCGTCTCCCTGTTCATTTTTTTCTGATTTTTGGATC
TTCCTATTCTGTCGTTTGAGTGCCGTCTCCGCCGCGGTTTTGTTGTAGGA
CGGTCTATTGAGCAGCACTCTAGACAGCAGTTGCAGTAGGTCTACCTCGG
CGGCTTATGTATGTGACACGCGGACTGTTGCAGACAGAATTTTCGTGACT
GGTCAACTTTTATTGCTGTAGTTCGATTGGGCGTTCTCTATATTGATTCG
TGGTGCAGGTTGCCTCACCCTCGTGTGTTTTTGTGGTTTTATTTAGTCTA
CCGGTAGGCATTTTTCTGCTAGCCACGTTATGGTTTTTGGGTATTATTGA
TGGTAGGCTCCTTGCGCTCTGTGACAACGGAAATTTCGGGATGGTTTTTA
TGTGAAGACAACAACAACAACAACAACAAGTAAGCCCCACCGTTCGTTGA
GGGTGTACCCGGAAAACACAAAACCATTCCCAACACATATCCCCTTATTT
TTTGGGTATGGGTAGGCTCCTTGCGCTCTGTGACAACGGAAATTGGCCGT
GTCTGTTGGATCAGTACGGACAAAGGGGGTACTGGGTGGAGAGATCGGGA
TGGTTTTTTATGTGAAGACAACAACAACAACAACAACAAGTAAGTGCACG
CGGGCGGCGTACACCCGCGGCACGAAAGGGGCCCACCGTTCGTTGAGGGT
GTACCCGGAAAACACAAAACCATTCCCAACACATATCCCCTTATATCCTC
CGCTACGCCCCGCCGTCTCTCCAACATCCCGTCGTATCTCCGT
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Coding sequence (CDS) from alignment at C-linearis_contig84:156435..158077-

>mRNA_C-linearis_contig84.16093.1 ID=mRNA_C-linearis_contig84.16093.1|Name=mRNA_C-linearis_contig84.16093.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at C-linearis_contig84:156435..158077- (Chordaria linearis ClinC8C monoicous)
ATGTATTATCTTCTTGCAAATGTATTATCTTCTTGCAATGCACGCGGGCG
GCGTACACCCGCGGCACGAAAGGGGCCCACCGTTCGTTGAGGGTGTACCC
GGAAAACACAAAACCATTCCCAACACATATCCCCTTATATCCTCCGCTAC
GCCCCGCCGTCTCTCCAACATCCCGTCGTATCTCCGTTGCACGCGGGCGG
CGTACACCCGCGGCACGAAAGGGGCCCACCGTTCGTTGAGGGTGTACCCG
GAAAACACAAAACCATTCCCAACACATATCCCCTTATATCCTCCGCTACG
CCCCGCCGTCTCTCCAACATCCCGTCGTATCTCCGT
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