mRNA_C-linearis_contig83.16081.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig83.16081.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE) HSP 1 Score: 414 bits (1065), Expect = 2.110e-135 Identity = 235/354 (66.38%), Postives = 267/354 (75.42%), Query Frame = 3
Query: 1077 RAFQLLKDGPMQVTVGMKQFMHDEAYTGLTGDGVFAGPPHELFVGSVPDVEEDAPPFQLKEVEEATLNKIQQRYDSVHPRLESLFPDDATTRAECIREMNASVKLLRETGTKAWDLPSLTRRAGQDDSSDGEXXXXXXXXXERLNDSGALGNVLPDALPDGPVARGGSGGAARGLRLEVGWFAVFPLELSNPRSLVVGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAVCFTFRSLLQSGKLPNSVWAAVEESVPYSSADESDSEVEDDEQEGRAGSDTGGSGVVGLRSA----PTAPPLATVTAPVLGLPPLCLRLALRQPQA 2126
RAFQLLKDGP QVTVGMK++MH EAYTGLTGDGVFAG PH+LFVG VPD DAPPFQLK++++ATL+KIQQRYDSVHPRLE+L+PDD R E IREMN SV+LLRE GTK WDLPSLT AG DDSSD XXXXXXXXX AL V P ALPDG + G GG GL L+ GWFAVFPLELSNP LVVGKI+SV+ SA +G ++TV WF+P +RKKCRRSKYGRG+WSQ+FLKEGN+ T DQGTESV+AVCFTF SLLQSGKLP++VW AVEESVP SS +ESDS+VE+++ A D GG RSA PTAPP T P+ P ALR P A
Sbjct: 56 RAFQLLKDGPSQVTVGMKEYMHHEAYTGLTGDGVFAGEPHDLFVGGVPDPA-DAPPFQLKDIDKATLDKIQQRYDSVHPRLEALYPDDPAKRNEYIREMNLSVQLLRERGTKDWDLPSLTSAAGLDDSSDXXXXXXXXXXXXXXXXXXALDTVSPQALPDGSLVGGEGGGPGSGLHLQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVPTSSLEESDSDVEEEQGGEWAAGDPGGE-----RSAIVQPPTAPPPERATTPIPN-PRSSATPALRPPPA 402
BLAST of mRNA_C-linearis_contig83.16081.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI) HSP 1 Score: 391 bits (1005), Expect = 4.700e-127 Identity = 215/343 (62.68%), Postives = 254/343 (74.05%), Query Frame = 3
Query: 1077 RAFQLLKDGPMQVTVGMKQFMHDEAYTGLTGDGVFAGPPHELFVGSVPDVEEDAPPFQLKEVEEATLNKIQQRYDSVHPRLESLFPDDATTRAECIREMNASVKLLRETGTKAWDLPSLTRRAG-QDDSSDGEXXXXXXXXXERLNDSG-----ALGNVLPDALPDGPVARGGSGGAARGLRLEVGWFAVFPLELSNPRSLVVGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAVCFTFRSLLQSGKLPNSVWAAVEESVPYSSADESDSEVEDDEQEGRAGSDTGGS----GVVGLRSAPTAPPLATVTAPV 2075
RAFQLLKDGP QVTVGMK+FMH E Y G+TGDGVFAG PHE+FVG +PD DAPPF+LK VE+ TL KIQQRYDSV PRLE+LFPDD R+E +REMN SV+LLRETGTK WDLPSLTR AG DSSD EXXXXXXXXX AL + P+ALPDGP+ G GGA LRL+ GWFAV PLE++N LVVG+I+SV S E+G +V +NWFAPV+RKKCRRS+YGRG+WSQ FLK+ N+ TPDQ TES+K+VCFTF+SLLQSGKLP+ VWAAVEESVP SS +E++++ D + +G G G GL +PT PP T P+
Sbjct: 5 RAFQLLKDGPTQVTVGMKEFMHHEVYRGMTGDGVFAGKPHEVFVGGIPDAA-DAPPFELKAVEQDTLVKIQQRYDSVVPRLEALFPDDPAKRSEIVREMNLSVELLRETGTKDWDLPSLTRTAGLHTDSSDDEXXXXXXXXXXXXXXXXXXXXXALDTMSPEALPDGPLTESGGGGAGNSLRLQPGWFAVLPLEMTNTCPLVVGQIVSVESGGENGGEVLINWFAPVSRKKCRRSRYGRGVWSQQFLKQDNKLTPDQSTESIKSVCFTFQSLLQSGKLPSGVWAAVEESVPSSSLEEAETDDSDSDADGVEGGGAAGGCRGEEQSGLAPSPTIPPHTRDTGPI 346
BLAST of mRNA_C-linearis_contig83.16081.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE) HSP 1 Score: 283 bits (725), Expect = 5.670e-81 Identity = 146/317 (46.06%), Postives = 196/317 (61.83%), Query Frame = 1
Query: 106 MPHLNATYLYLGSMKELYEDF-AESRRTAGQSIP---SYTYFTRVWRENRSHVKPKTGGDFMKCYHCTVYKDTRFGAPGIRPSTNPATLSAAKEAHILHLKGIELDRACLLRNEQRAMEAKADRDPLRNVSLQADAAGQIAFGLPMQGTLTHGTDRGYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLHHTFNRLFEMHVPAGTRPH---ITHLTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILI 1035
MPH + + + +ELY+DF E++R + S +F R+ R++R H++ + GG+FMKC C K+ R G+PG++PS + + L++ H + ++ DR + AM AKAD PL V + DAA + LP THG DRGYSERQK+MAV +EGQF++V+ TPQ LGGGCNL CT+ H R+ + + + P I H QVDNCVSENKN+ LGY G L+A V+ VE+HFM VGHTH KIDQVFSRFS G K N+FTR A A+YT++PV +TLRN GNFKG+LI
Sbjct: 1 MPHKDHVVICSSNKEELYQDFLTEAKRVYPEDTSKRVSKAHFFRIPRKDRPHIRVRVGGEFMKCDICVTLKERRHGSPGVKPSLDSSALASIDRDLAAHRQMVQADRLVIANRTGDAMRAKADGKPLNFVFMSIDAANSTSHALPAIYPPTHGGDRGYSERQKIMAVHIEGQFVEVYFTPQYLGGGCNLACTAAHLAITRIIDKYHDSPPHPSGCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSRFSRGIKGKNIFTRTHLAEELRASYTEVPVFCSTLRNEGNFKGLLI 317
BLAST of mRNA_C-linearis_contig83.16081.1 vs. uniprot
Match: A0A6H5KD34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD34_9PHAE) HSP 1 Score: 270 bits (690), Expect = 1.080e-80 Identity = 170/339 (50.15%), Postives = 201/339 (59.29%), Query Frame = 3
Query: 1125 MKQFMHDEAYTGLTGDGVFAGPPHELFVGSVPDVEEDAPPFQLKEVEEATLNKIQQRYDSV---------------HPRLESLFPDDATTRAECIREMNASVKLLRETGTKAWDLPSLTRRAGQDDSSDGEXXXXXXXXXERLNDSGALGNVLPDALP-------DGPVARGGSGGAARGLRLEVGWFAVFPLELSNPRSLVVGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAVCFTFRSLLQSGKLPNSVWAAVEESVPYSSADESDSEVEDDEQEGRAGSDTGGSGVVGLRSAPTAPPLATVTAPV 2075
MK++MH EAYTGLTGDGVFAG PHELFVG VPD DAPPFQLK++++ATL+KIQQRYDSV P L XXXXXXXXX DG + GG GG GL L+ GWFAVFPLELSNP LVVGKI+SV+ SA +G ++TV WF+P +RKKCRRSKYGRG+WSQ+ LKEGN+ T DQGTESVKAVCFTF SLLQSGKLP++VW AVEESVP SS +ESDS++E++++ RAG D GG ++ PTAPP T P+
Sbjct: 1 MKEYMHHEAYTGLTGDGVFAGEPHELFVGGVPDPA-DAPPFQLKDIDKATLDKIQQRYDSVGKTWVCNLMYLVVFSEPTLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGSLVGGGGGGPGSGLHLQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQENLKEGNKLTADQGTESVKAVCFTFPSLLQSGKLPSAVWDAVEESVPISSLEESDSDIEEEQRRERAGGDLGGERSAKVQP-PTAPPPERATTPI 337
BLAST of mRNA_C-linearis_contig83.16081.1 vs. uniprot
Match: A0A6H5K3A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A9_9PHAE) HSP 1 Score: 241 bits (614), Expect = 1.160e-71 Identity = 132/190 (69.47%), Postives = 148/190 (77.89%), Query Frame = 3
Query: 1371 MNASVKLLRETGTKAWDLPSLTRRAGQDDSSDGEXXXXXXXXXERLNDSGALGNVLPDALPDGPVARGGSGGAARGLRLEVGWFAVFPLELSNPRSLVVGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAVCFTFRSLLQSGKLPNSVWAAVEESVPYSS 1940
MN SV+LLRE GTK WDLPSLT AG DDSSD XXXXXXXXX AL V P ALPDG + GG GG GL L+ GWFAVFPLELSNP LVVGKI+SV+ SA +G ++TV WF+P +RKKCRRSKYGRG+WSQ+FLKEGN+ T DQGTESV+AVCFTF SLLQSGKLP++VW AVEES SS
Sbjct: 1 MNLSVQLLRERGTKDWDLPSLTSAAGLDDSSDXXXXXXXXXXXXXXXXXXALDTVSPQALPDGSLVGGGGGGPGSGLHLQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESQGKSS 190
BLAST of mRNA_C-linearis_contig83.16081.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE) HSP 1 Score: 237 bits (604), Expect = 6.960e-64 Identity = 136/354 (38.42%), Postives = 199/354 (56.21%), Query Frame = 1
Query: 64 LGYIDRFSDMFGQLMPHLNATYLYLGSMKELYEDFAESRR--------TAGQSIPSYTYFTRVWRENRSHVKPKTGGDFMKCYHCTVYKDTRFGAPGIRPSTNPATLSAAKEAHILHLKGIELDRACLLRNEQRAMEAKADRDPLRNVSLQADAAGQIAFGLPMQGTLTHGTD-RGYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLHHTFNRLFEMHVPAGTRPHITHLTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILIPGVCVKKLHGMTKGALSSCSK 1098
+ ++ R DM+GQ MP+ + +YLYL S ELYE+++++ R + + + S YF +VW + ++K K GDFM C CT+ K+ G G R + A + + HL+ +E DR R E +A AK++ P V LQ DAA Q F P+ + HG D RGY+ERQK+ LV G + VF+ PQ LG G N++CT+L F M + + + + +Q+DN VSENKN+ ++G+L AL+ GV+ +V + FM VGHTHI+IDQVFS F+ K +FTR A F +AY LPV TL NL NFK ++ P +++ +TK + SK
Sbjct: 255 VAFLHRHEDMYGQKMPNSDQSYLYLKSKLELYEEYSKNTRELYGQDPASLAERLCSKNYFNQVWSAHFGNLKLKPNGDFMLCEICTLLKEKIHGQAGSRGVLDEAERERHQSVYKEHLQDVERDRMYGARLENQAAVAKSNGTPWETVYLQVDAANQSNFATPIGASQAHGVDDRGYAERQKIYGALVSGIMMQVFMIPQILGTGSNMVCTTLFTLF-----MELTLQWKHSLGDVFIQMDNTVSENKNNFIMGFLAALVGRGVMRSVTLCFMMVGHTHIQIDQVFSCFARSVKGCAVFTREHLAEFFESAYKTLPVKCRTLENLANFKDLVQP--VTRRIPNITKFQAFNISK 601
BLAST of mRNA_C-linearis_contig83.16081.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE) HSP 1 Score: 225 bits (574), Expect = 2.380e-61 Identity = 122/253 (48.22%), Postives = 152/253 (60.08%), Query Frame = 1
Query: 277 MKCYHCTVYKDTRFGAPGIRPSTNPATLSAAKEAHILHLKGIELDRACLLRNEQRAMEAKADRDPLRNVSLQADAAGQIAFGLPMQGTLTHGTDRGYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLHHTFNRLFEMHVPAGTRPHITHLTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILI 1035
MKC CT K+ GAPGIRP N + H + DR L + A +A+ PL V++Q D A QI + L GT+ T G+SERQKVMAV EG F+DV PQ GGG NL+CT+L RL M G R +I L LQ+DNCV ENKN+I+L ++G L+A GVIG+ EV F+ VGHTHIKIDQVFSRFS G ++FTR+Q F +Y +LPVH TL NLGNFKG+ +
Sbjct: 1 MKCSDCTEIKEKLHGAPGIRPIQNTRQRAEIVRHQKEHHHIVSKDRELLTSRMEAARREQANGTPLNQVTIQQDCACQIRYAL---GTVHPQTHAGFSERQKVMAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSAMGTKPGQRFYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGELFRESYKELPVHVGTLTNLGNFKGLYL 250
BLAST of mRNA_C-linearis_contig83.16081.1 vs. uniprot
Match: A0A6H5J810_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J810_9PHAE) HSP 1 Score: 189 bits (480), Expect = 1.500e-49 Identity = 103/150 (68.67%), Postives = 115/150 (76.67%), Query Frame = 3
Query: 1404 GTKAWDLPSLTRRAGQDDSSDGEXXXXXXXXXERLNDSGALGNVLPDALPDGPVARGGSGGAARGLRLEVGWFAVFPLELSNPRSLVVGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAV 1853
GTK WDLPSLT AG DDSSD XXXXXXXXX AL V P ALPDG + GG GG GL L+ GWFAVFPLELSNP LVVGKI+SV+ SA +G ++TV WF+P +RKKCRRSKYGRG+WSQ+FLKEGN+ T DQGTESVKAV
Sbjct: 129 GTKDWDLPSLTTAAGLDDSSDXXXXXXXXXXXXXXXXXXALDTVSPQALPDGSLVGGGGGGPGSGLHLQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVKAV 278
BLAST of mRNA_C-linearis_contig83.16081.1 vs. uniprot
Match: A0A6H5JXN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN7_9PHAE) HSP 1 Score: 173 bits (438), Expect = 9.880e-43 Identity = 119/335 (35.52%), Postives = 164/335 (48.96%), Query Frame = 1
Query: 130 LYLGSMKELYEDFAESRRTAGQSIPS---YTYFTRVWRENRSHVKPKTGGDFMKCYHCTVYKDTRFGAPGIRPSTNPATLSAAKEAHILHLKGIELDRACLLRNEQRAMEAKADRDPLRNVSLQADAAGQIAFGLPMQGTLTHGTDRGYSERQKVMAVLVEGQFIDVFLTPQNLGGGCNLICTSLHHTFNRLFEMHVPAGTR--------------PHITH-LTLQVDNCVSENKNHILLGYLGALIAHGVIGAVEVHFMPVGHTHIKIDQVFSRFSTGCKHLNLFTRAQQAAAFSAAYTKLPVHTTTLRNLGNFKGILIPG--VCVKKLHGMTK 1074
+Y ++E+Y FAE R + S YF ++WRE R +K GDFMKC CT + GAPGIRP + + H + DR L + + A +A+ PL V++Q D A QI + L TH SERQ++ EG P+ G + NR E G P + H + DNCV ENKN+I+L ++G L+A GVIG+ EV F+ VGHTHIKIDQVFSRFS G ++FTR+Q F +Y +LPVH TL NLGNFKG+ + + ++++ +TK
Sbjct: 1 MYHTFLQEMYARFAEHTRHVHGEVDSGFSRPYFNQIWREERPLIKLARFGDFMKCSDCTEINEKLHGAPGIRPIQDTRQRAEIVRHQKEHHHIVSKDRELLTSHMEAAKREQANGTPLNQVTIQQDCACQIRYALGTVHPQTHA-----SERQRLFGA-AEGHG-----RPRRRG----VRGRPFRPADNRWREQPGVHGAVVGPQTTVCNVDQAWPEVLHQASPPSDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSRFSVGTLGRSIFTRSQLGERFRESYKELPVHVGTLTNLGNFKGLYLDDNKLNLRRIRNVTK 320
BLAST of mRNA_C-linearis_contig83.16081.1 vs. uniprot
Match: A0A6H5K4U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U0_9PHAE) HSP 1 Score: 161 bits (407), Expect = 2.540e-42 Identity = 92/158 (58.23%), Postives = 111/158 (70.25%), Query Frame = 3
Query: 1665 VGKILSVNSSAEHGDQVTVNWFAPVARKKCRRSKYGRGIWSQDFLKEGNRFTPDQGTESVKAVCFTFRSLLQSGKLPNSVWAAVEESVPYSSADESDSEVEDDEQEGRAGSDTGGSGVVGLRSA----PTAPPLATVTAPVLGLPPLCLRLALRQPQA 2126
V + SV+ SA +G ++TV WF+P +RKKCRRSKYGRG+WSQ+FLKEGN+ T DQGTESV+AVCFTF SLLQSGKLP++VW AVEESVP SS +ESDS+VE+++ A D GG RSA PTAPP T P+ P ALR P A
Sbjct: 4 VTSLFSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVPTSSLEESDSDVEEEQGGEWAAGDPGGE-----RSAIVQPPTAPPPERATTPIPN-PRSSATPALRPPPA 155 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16081.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig83.16081.1 >prot_C-linearis_contig83.16081.1 ID=prot_C-linearis_contig83.16081.1|Name=mRNA_C-linearis_contig83.16081.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=346bp MFGQLMPHLNATYLYLGSMKELYEDFAESRRTAGQSIPSYTYFTRVWRENback to top mRNA from alignment at C-linearis_contig83:805735..811839- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig83.16081.1 ID=mRNA_C-linearis_contig83.16081.1|Name=mRNA_C-linearis_contig83.16081.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6105bp|location=Sequence derived from alignment at C-linearis_contig83:805735..811839- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig83:805735..811839- >mRNA_C-linearis_contig83.16081.1 ID=mRNA_C-linearis_contig83.16081.1|Name=mRNA_C-linearis_contig83.16081.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2076bp|location=Sequence derived from alignment at C-linearis_contig83:805735..811839- (Chordaria linearis ClinC8C monoicous)back to top |