mRNA_C-linearis_contig83.16077.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig83.16077.1
Unique NamemRNA_C-linearis_contig83.16077.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig83.16077.1 vs. uniprot
Match: A0A6H5KZV7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZV7_9PHAE)

HSP 1 Score: 542 bits (1397), Expect = 3.070e-174
Identity = 330/809 (40.79%), Postives = 422/809 (52.16%), Query Frame = 1
Query:    4 RNLAVVVPTHSGDLEGAIAALELWPKVCSAPTLHHMHLVVYYSGSAGDGVWNEDIISTVARTGGRCFERTKAVFANLTKQENVYPKGPSVMFYKMFLDRDVARALEGYDALAVVEWDVVVAHPTSFEMLYKSAFFSSEEFWMKGSTLAGAEFHETAGLSEMWHILGHLNGNAIYNNTDPGFHEFVNFTLNRWQYQYSYDVALWATIADFPYSWPLWQRYSSKFVATQLIANVGFHDVSQPEVGMAVSRNTLFIHGSTGGGGGTTNHAVAHAKARVAAV---------APDCARACGGAGKLEISG-----MSTFCDASCLLRWSPAGPRFGGHGCGADDPTRFGEDCRRCYTSQEAALAEERKLSSPDNM------------------------GPNTGVHVVMCSTGSPPAA---------------------------------------------KSECSDECVSTGDAVCDYRCGRGVYGDLHCNWRGLGQNCRFCFRDYFDAHLADEISKTNGSRVIMCDTHEPPLAIGSNPTLELGSVGKTEPPTAL--------------------------PSGAATEASAVDVASTALTDSAAFSGNIARGEMCAFMVGYFAFLEETSVGVSSVLHFMPGMKVGIATHPTDFDVFNRTLGKFPTVSVINA-SRVEHSAVHADKACGPRTRLIYYMEVGEVLSRPFTPKDTHSSRGDLIVSFTSSESGHQECDRQAKAADILLGFYPPCFTYGSDLILPAELNQQLRGIVRARTRTNKGGPGNDLADDLTGDLAALAASHNEYASVHVPEV 2100
            R LAVVVP H+GDL  A+ +L  WP  C + TL + HL++YY+G   D V    ++  +A+TGGRCF  T+ V ANL+++ENVYPKGPSV FYK++LD +V R L  YDALA++EWDV+VAH TSFE LY +AF   E FW+KGSTL G  FHET  L E  H+LGH+NGNAIYNNTDP F EFVN+TL RW+Y  SYDVALWATI+DFPYSWPLWQR+S KFVA  LIANVGF D+ Q  V  AV+ NTLFIHGS  GGGG+  HA + AKA  +              C  +CGG G    SG     ++T CD SC       G RFGG+ CGA D   +G  CR C+T  E A A E +L+  +                          GP      V    G    A                                              + CS++C    D VCD  CG G YGD +C WRG G +CRFCF D  +A  A+ ++K  G  VIMC T EPP                                                 P   A E                +  +I RG++CAFM G+ +FL+ET V V S++ FMPGM+V IAT   D  VF R+LG  P V +  A S +  + + AD+ CG  T+L++YM  GE+LSR FT KDTHS+ GDL+V +       +   R+A A   +LGF  P F++G D++LP   N QLR ++ +    + G  G  L D  +  + AL     +++ V VPEV
Sbjct:  122 RRLAVVVPAHAGDLGKALTSLATWPTTCHSSTLVNAHLILYYAGGEDDDV--AAVLPALAQTGGRCFANTRLVLANLSQEENVYPKGPSVQFYKLYLDSNVRRQLIEYDALAIIEWDVIVAHDTSFEKLYAAAFGGVEPFWIKGSTLEGVNFHETVVLPESRHVLGHINGNAIYNNTDPAFVEFVNYTLTRWEYTQSYDVALWATISDFPYSWPLWQRFSRKFVAIDLIANVGFQDMDQQAVLKAVASNTLFIHGSLTGGGGSMFHA-SGAKADSSPALRFLGKNRPGERCTASCGG-GAPPSSGVGAGALATVCDRSCYSG-GELGARFGGYLCGAGDIKEYGSHCRTCFTDMEEAQAAEEQLAEEEQAAMRGRSFKMPVDNEKSRRVLRADDGPEGAAGWVEGGEGGDSRAVLRGNRGGGAGVTRRMDAVDGGTDDEMVEXXXXXXXXXXXXXXXPATGCSNKCQMKTDTVCDRSCGTGRYGDYNCGWRGYGSDCRFCFNDREEALTANAVAKRRGGSVIMCHTFEPPTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTPYDPANEP---------------YLKDITRGQICAFMTGFSSFLKETEVTVKSIVQFMPGMRVAIATQDHDVSVFKRSLGNLPGVVISEAISPITLAPLLADRHCGKGTKLVFYMNPGELLSRKFTSKDTHSAAGDLLVVYAEVGRVGEASARRALATMSVLGFSSPSFSFGMDIMLPVHTNGQLRELLLS----DPGATGKGL-DRESQAVHALG----KFSGVFVPEV 901          
BLAST of mRNA_C-linearis_contig83.16077.1 vs. uniprot
Match: D8LCC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCC7_ECTSI)

HSP 1 Score: 503 bits (1294), Expect = 8.430e-162
Identity = 285/657 (43.38%), Postives = 380/657 (57.84%), Query Frame = 1
Query:  241 QENVYPKGPSVMFYKMFLDRDVARALEGYDALAVVEWDVVVAHPTSFEMLYKSAFFSSEEFWMKGSTLAGAEFHETAGLSEMWHILGHLNGNAIYNNTDPGFHEFVNFTLNRWQYQYSYDVALWATIADFPYSWPLWQRYSSKFVATQLIANVGFHDVSQPEVGMAVSRNTLFIHGSTGGGGGT--TNHAVAHAKARVAAVA--------------------------------PDCARACGGAGKLEISG------------MSTFCD-ASCLLRWS-PAGPRFGGHGCGADDPTRFGEDCRRCYTSQEAALAEERKLSSPDNMGPNTGVH-VVMCSTGSPPAAKSECSDECVSTGDAVCDYRCGRGVYGDLHCNWRGLGQNCRFCFRDYFDAHLADEISKTNGSRVIMCDTHEPPLAIGSNPTLELGSVGKTEPPTALPSGAATEASAV-DVASTALTDSAA-----------------------FSGNIARGEMCAFMVGYFAFLEETSVGVSSVLHFMPGMKVGIATHPTDFDVFNRTLGKFPTVSVINASRVE-HSAVHADKACGPRTRLIYYMEVGEVLSRPFTPKDTHSSRGDLIVSFTSSESGHQECDRQAKAADILLGFYPPCFTYGSDLILPAELNQQLRGIVRART 1989
            QENVYPKGPSV FYK+FL+  +   LE + A+AV+EWDV+VAH  SFE LY +AF   E FW+KGS LAG  FH T  +++ WH+LGH+NGNAIYNN+DP F +FV FTL RW Y YSYDVALWAT++DFPYSWPLWQR+SSKFV+T LIANVGF DV Q  VG A++  T+FIHGS  GGGGT   + A A      AA +                                P+C   CG     ++ G            M+T CD A+C    +  A  + G   CGA D  RFG+ CR CY   E AL  +R L +          H V+MC T  PP A S CS +C +  D +CD RC  G++G+ +CNWR  G++CRFCF D   A +AD+ +K  G RVIMC+THEPP+ +      EL ++ K      + + A+  A+A      T+ T   A                       +S ++ RGEMCAF   Y+ +L ET   V S+ HF+PGM+V +A     F VFNRTLG +P V V+NA+    H+++ AD  CG  T+LI Y+  G+V+SRPF+ KDTH +RG+L+V +T  E   +   ++ +A   LLGF  P F++G+DL LPA +N++LR ++ + T
Sbjct:   28 QENVYPKGPSVQFYKLFLEDTIKEKLERFGAIAVIEWDVLVAHDKSFEKLYVAAFDVVEPFWVKGSILAGTNFHGTVTITDNWHMLGHINGNAIYNNSDPAFADFVEFTLARWGYSYSYDVALWATVSDFPYSWPLWQRFSSKFVSTNLIANVGFLDVDQETVGNALASETMFIHGSLTGGGGTQFASGATAEKGGNAAAASEGGNSLRIMASLEANAAGEDVGGGGPSTRLATPECRTECGSTVSWDLLGGXXXXXXDGVMDMATVCDHATCSAATAGSADGKPGAWSCGAGDEERFGKHCRPCYFDAEEALKADRVLQNQTREASEEQPHHVIMCDTLRPPEA-STCSLKCATKKDTICDDRCKSGLFGNYNCNWRDHGEHCRFCFDDTAAAIVADKAAKRTGGRVIMCNTHEPPVELTQ---AELDALEKERIEHVMEAAASKMANAAKQEKKTSNTKGHANPGGKTAGDEGEPDAPVHPAMIEYSKDLLRGEMCAFATAYYLYLRETEASVRSLAHFLPGMRVRLAVDTIHFSVFNRTLGGYPDVEVVNATTTGGHASLLADVHCGEGTKLILYLGPGDVVSRPFSKKDTHGTRGELLVPYTEPERLDEYHIKRTQATTSLLGFDAPSFSFGTDLFLPAWVNRELRRVLASGT 680          
BLAST of mRNA_C-linearis_contig83.16077.1 vs. uniprot
Match: A0A6H5K6N3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K6N3_9PHAE)

HSP 1 Score: 488 bits (1256), Expect = 1.030e-153
Identity = 310/817 (37.94%), Postives = 413/817 (50.55%), Query Frame = 1
Query:    4 RNLAVVVPTHSGDLEGAIAALELWPKVCSAPTLHHMHLVVYYSGSAGDGVWNEDIISTVARTGGRCFERTKAVFANLTKQENVYPKGPSVMFYKMFLDRDVARALEGYDALAVVEWDVVVAHPTSFEMLYKSAFFSSEEFWMKGSTLAGAEFHETAGLSEMWHILGHLNGNAIYNNTDPGFHEFVNFTLNRWQYQYSYDVALWATIADFPYSWPLWQRYSSKFVATQLIANVGFHDVSQPEVGMAVSRNTLFIHGSTGGGGGT---TNHAVAHAKARVAAVAPDCARACG-----GAGKLEISGMSTFCDASCLLRWSPAGPRFGGHGCGADDPTRFGEDCRRCYTSQEAALAEERKLSSPDNM-------------------------------------------------GPNT---------------GV----------------------HVVMCSTGSPPAAKSECSDECVSTGDAVCDYRCGRGVYGDLHCNWRGLGQNCRFCFRDYFDAHLADEISKTNGSRVIMCDTHEPPL----------AIGSNPTLELGSVGKTE-----PPTALPSGAATEASAVDVASTALTDSAAFSG--------NIARGEMCAFMVGYFAFLEETSVGVSSVLHFMPGMKVGIATHPTDFDVFNRTLGKFPTVSVINASR-VEHSAVHADKACGPRTRLIYYMEVGEVLSRPFTPKDTHSSRGDLIVSFTSSESGHQECDRQAKAADILLGFYPPCFTYGSDLILPAELNQQLRGIVRARTRTNKGGPGNDLADDLTGDLAALAASHNEYASVHVPEV 2100
            R LAVVVP  + D+  A A+L  WP  C + TL +  LV YY+G  GD      +++T+ +TGGRCF RT+ V A+ + ++N  PK  S+ FYK++LD  +      YDALAV+EW+V+VAH  SFE LY +AF   E FW+KGS L     HE    SE    +GH+NGNAIYNNTD  F ++VNFT+ RW+Y   YD ALWATI+DFPYSWPLWQR+S KFV T LIANVG HDV   E+  AV+  TLFIHG+   GG +   +N            +A  C  +CG         +  SG +T CD SC       G RFGGH CGA D   +G  CR C+T    A A E  L+  + +                                                 G N                GV                      HV+MC T  PP A S CS +C    DAVCD  CG G +GD +CNWRG G+NCR+C+ D   A  A+ +++  G  V+MC+T EPP           A      ++L      +     P T++P   A    + +  S  LTD A  S          I RG++CAF+     FL+ET V V S+  FMPGM+V IAT   D  +F R  G  P V V  A R    + + AD+ CG  T+LI YM+ GE+L R FT +DTHS  GDL+V+++  +   Q    +A AA ++LGF  P F++G+D+ILP ++N++LR  + + +   KG           GDL A+ A  N    ++VPEV
Sbjct:   92 RRLAVVVPIQAADVRKAQASLAAWPTRCHSSTLVNTDLVAYYAG--GDDEHVSAMLATIEQTGGRCFARTRLVLAHASDKDNERPKMASIQFYKLYLDSTIRCQFADYDALAVMEWNVIVAHDRSFEELYTAAFGGVEPFWVKGSALVSGSSHEIVVHSENRTTVGHINGNAIYNNTDQTFVDYVNFTVTRWEYTLPYDEALWATISDFPYSWPLWQRFSRKFVTTNLIANVGVHDVDIRELLDAVAGGTLFIHGTPTDGGVSMVGSNE-----------LAERCTVSCGFRFPNAHATMAPSGTATVCDRSCYAGGRD-GARFGGHLCGAGDVATYGAHCRTCFTDLGEAEAAEDTLALQERLVLEREGDTRTGNVAFEKSWRSDEAAWTYGRGGEGWPQQEVGEQHVEGGVGGNRDNRERGAVGHQRQQGGVNIMEPKQDRDMNKVQPILEKQRHVIMCDTLMPPPAASGCSHQCHEMDDAVCDRSCGTGRHGDYNCNWRGYGKNCRYCYNDRLQAMAANVVARQRGGSVVMCNTFEPPTEDEDWESPVEAEKVRAMVKLDEEADADAQEKAPQTSMP---APLPHSFNTGSATLTDEATSSNPANEPFVTGIKRGQICAFLTSNTFFLKETQVSVKSIGQFMPGMRVAIATDANDVSLFKRVFGTVPEVRVSVAIRSTSRAPLLADRHCGEGTKLILYMKAGELLWRTFTSRDTHSPAGDLLVAYSELDRVGQSRKNKALAAMLVLGFKGPSFSFGTDIILPVDVNRELRNFLLSDSTAVKG------RVSTNGDLQAVHALGN-VPGLYVPEV 884          
BLAST of mRNA_C-linearis_contig83.16077.1 vs. uniprot
Match: A0A6H5JKY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKY0_9PHAE)

HSP 1 Score: 471 bits (1212), Expect = 9.660e-150
Identity = 284/693 (40.98%), Postives = 375/693 (54.11%), Query Frame = 1
Query:  241 QENVYPKGPSVMFYKMFLDRDVARALEGYDALAVVEWDVVVAHPTSFEMLYKSAFFSSEEFWMKGSTLAGAEFHETAGLSEMWHILGHLNGNAIYNNTDPGFHEFVNFTLNRWQYQYSYDVALWATIADFPYSWPLWQRYSSKFVATQLIANVGFHDVSQPEVGMAVSRNTLFIHGSTGGGGGT--TNHAVAHAKARVAAVA--------------------------------PDCARACG----------GAGKLEISGMSTFCD-ASCLLRWS-PAGPRFGGHGCGADDPTRFGEDCRRCYTSQEAALAEERKLSSPDN-MGPNTGVHVVMCSTGSPPAAKSECSDECVSTGDA------------------------VCDYRCGRGVYGDLHCNWRGLG--------------QNCRFCFRDYFDAHLADEISKTNGSRVIMCDTHEPPLAIGSNPTLELGSVGKTEPPTALPSGAATEASAVDVAS-TALTDSAA-----------------------FSGNIARGEMCAFMVGYFAFLEETSVGVSSVLHFMPGMKVGIATHPTDFDVFNRTLGKFPTVSVINASRVE-HSAVHADKACGPRTRLIYYMEVGEVLSRPFTPKDTHSSRGDLIVSFTSSESGHQECDRQAKAADILLGFYPPCFTYGSDLILPAELNQQLRGIVRART 1989
            QENVYPKGPSV FYK+FL+      LE + A+A++EWDV VAH  SFE LY +AF   E FW+KGS LAG  FH TA +++ W +LGH+NGNAIYNN+DP F +FV FTL RW Y YSYDVALWAT++DFPYSWPLWQR+SSKFV+T LIANVGF DV Q  +G A++  T+FIHGS  GGGGT   + A A      AA +                                P+C   CG          G G+  +  ++T CD A+C    +  A  + G   CGA D  RFG+ CR CY   E AL  +R L +    +G     HV+MC T  PP A S CS +C    D                         +CD RC  G++G+ +CNWR  G              ++CRFCF D   A +ADE +K  G RVIMC+THEPP+        E+ ++ K      + + A+  A+A      T+ T   A                       +S N+ RGEMCAF   Y  +L ET   V S+ HF+PGM+V +A     F VFNRTLG +P V ++NA+    H+++ AD  CG  T+LI Y+  G+V+SRPF+ KDTH + G L+V +T  +   +   R+ +A   LLGF  P F+YG+DL LPA +N +LR ++ + T
Sbjct:   28 QENVYPKGPSVQFYKLFLEDTFKEKLERFGAIAIMEWDVRVAHDKSFEKLYIAAFDVVEPFWVKGSVLAGTNFHGTATITDNWRMLGHINGNAIYNNSDPAFADFVEFTLARWGYSYSYDVALWATVSDFPYSWPLWQRFSSKFVSTNLIANVGFLDVDQETLGNALASETMFIHGSLSGGGGTQFASGATAEKGGNAAAASEGGNSLRIMASLEANAAGEDVGGGGPSIRLATPECRTECGSTVSWDLLGGGGGEDGVMDIATVCDHATCSAATAGSADGKPGAWSCGAGDEERFGKHCRSCYFDAEEALKADRILQNQAREVGEVQPRHVIMCDTLRPPEA-STCSLKCALKKDTARTNSSMRPPEPHVNPVWLYVPPQICDDRCESGLFGNYNCNWRDHGALLWTQMILFTPAPEHCRFCFDDTAAAIVADETAKRMGGRVIMCNTHEPPV---ERTQAEMDALEKKRIEHVMEATASKMANAAKQGKKTSNTKGHANPGGKAAGDEGEPDAPVHPAMIEYSENLLRGEMCAFSTAYHLYLRETEASVRSLAHFLPGMRVRLAVDTIHFSVFNRTLGGYPDVEIVNATTTGGHASLLADVHCGEGTKLILYLGPGDVVSRPFSKKDTHGTCGQLLVPYTEPDRLDEYHVRRTQATTFLLGFDAPSFSYGADLFLPAWVNPELRRVLASGT 716          
BLAST of mRNA_C-linearis_contig83.16077.1 vs. uniprot
Match: D7FKL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL9_ECTSI)

HSP 1 Score: 395 bits (1014), Expect = 1.120e-121
Identity = 227/494 (45.95%), Postives = 291/494 (58.91%), Query Frame = 1
Query:  688 IANVGFHDVSQPEVGMAVSRNTLFIHGSTGGGGGTTNHAVAHAKARVAAVAPD-----CARACGGA--GKLEISGMSTFCDASCLLRWSPAGPRFGGHGCGADDPTRFGEDCRRCYTSQEAALAEERKLSSPDNMGPNTGVHVVMCSTGSPPAAKSECSDECVSTGDAVCDYRCGRGVYGDLHCNWRGLGQNCRFCFRDYFDAHLADEISKTNGSRVIMCDTHEPPLAIGS--NPTLELGSVGKTEP---PTALPSGAATEASAVDVAS-------TALTDSAAFSGNIARGEMCAFMVGYFAFLEETSVGVSSVLHFMPGMKVGIATHPTDFDVFNRTLGKFPTVSVINASRVEHSAVHADKACGPRTRLIYYMEVGEVLSRPFTPKDTHSSRGDLIVSFTSSESGHQECDRQAKAADILLGFYPPCFTYGSDLILPAELNQQLRGIVRAR----TRTNKGGPGNDLADDLTGDLAALAASHNEYASVHVPEV 2100
            I NVG  DVS   V  AV++ TLFIHGS+   G    H++ H    + A++ D     C  ACG A  GK+  +G+STFCD SC   WSPAGPR GGH CGA DP++FG  CR CYT +E AL  + KL+S         +HVVMC T  PP A S C+  C    D VCDYRCG G YGD +C+WRGLG  CR CF +   AHLADE +K +G RV+MC+THEPP  IGS  N   E    G  +    PT L + A  E +  ++ S        A T+   + G   RG +CAFM GY   L    V VSSVL FMPGM++GI THP +F+ FNRT G  P V+V  ++ VEH  + AD  CG  TRLIYYM+ GE+LSR FT KDTH+  GDLIVS  +++   Q    +   + +LLG   P FT+GSDLILPAE N QLR ++        RT+     +D  + +   LA +A++H + A +++PEV
Sbjct:  123 ITNVGHFDVSDQHVAQAVAQETLFIHGSSQSEGSLA-HSINHFGRPMGALSIDGNSLDCTSACGSALSGKIG-TGVSTFCDESCATGWSPAGPRLGGHDCGAGDPSQFGGTCRLCYTDEELALVADHKLASASANPSKPDMHVVMCDTTQPPPASS-CTTACQDASDTVCDYRCGSGRYGDFNCDWRGLGSTCRLCFNELPAAHLADEFAKAHGGRVVMCNTHEPPPPIGSYTNDKEEENGHGSADAGNGPT-LVAPAPQERNNKEIVSGDEESQGPAATE---YIGTTTRGHICAFMRGYSRLLPMMKVSVSSVLQFMPGMRIGITTHPREFEEFNRTFGHLPNVTVGTSTNVEHGPLVADYICGEGTRLIYYMDAGEMLSRTFTKKDTHTVTGDLIVSLVNTDEVPQPTAARGMGSSVLLGVTTPTFTHGSDLILPAETNAQLRAVLEGNQKLVARTDAKHGHSDRVERIYEYLADVASTHKDSAIINIPEV 609          
BLAST of mRNA_C-linearis_contig83.16077.1 vs. uniprot
Match: A0A6H5L0V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V3_9PHAE)

HSP 1 Score: 395 bits (1014), Expect = 1.230e-121
Identity = 236/512 (46.09%), Postives = 300/512 (58.59%), Query Frame = 1
Query:  688 IANVGFHDVSQPEVGMAVSRNTLFIHGSTGGGGGTTNHAVAHAKARVAAVAPDCARACGGAGKLEIS-GMSTFCDASCLLRWSPAGPRFGGHGCGADDPTRFGEDCRRCYT-SQEAALAEER-KLSSPDNMGPNTGVHVVMCSTGSPPAAKSECSDECVSTGDAVCDYRCGRGVYGDLHCNWRGLGQNCRFCFRDYFDAHLADEISKTNGSRVIMCDTHEPPLAIGSNPTLEL-----GSVGKTEPPTALPSGAATEASAVDVASTALTDSAAFSGNIARGEMCAFMVGYFAFLEETSVGVSSVLHFMPGMKVGIATHPTDFDVFNRT----------------------------LGKFPTVSVINASRVEHSAVHADKACGPRTRLIYYMEVGEVLSRPFTPKDTHSSRGDLIVSFTSSESGHQECDRQAKAADILLGFYPPCFTYGSDLILPAELNQQLRGIVRARTRTNK----GGPGNDL-ADDLTGDLAALAASHNEYASVHVPEV 2100
            I+N+GF D++   V  AVS++TLFIHG+T  GG   +  V HA  R    + +C  ACG       S G+ST CD SC ++WS  GPRFGGH CGA + +++G +CR CYT S+EA+ AE    LSS D +   +  HVVMC T +PP+  S CS  C +T D VCDYRCG G+YGDLHCNWRGLG+ CR CF D   A+LADE  K  G RVI+C+T EPP +IGS           G +  + P    P G  T  +  D   T L+ S         G+MCAFM GYF FL ET + V SVL FMP M+V I THP DF VFNR+                             G    VS+ N+S VE+ ++ AD+ CG  TRLIYYMEVG+VLSR FT K TH++R +LIVSF  +   H E  R+A  + +LLGF  P FT+GSDLILPAE N QLR ++  +TR  +    G  G +L  +DL   LA++A  H E  S++VPEV
Sbjct:    9 ISNIGFFDINDKHVEKAVSQDTLFIHGNTLSGGSVASLPVKHAH-RPRHSSSNCTDACGSRTSAGNSAGISTICDESCSVKWSSTGPRFGGHNCGAGNASQYGSNCRLCYTNSEEASTAESMLALSSVDTLA--SDAHVVMCGTRNPPSGPS-CSAGCENTIDTVCDYRCGSGLYGDLHCNWRGLGKTCRLCFHDDSAAYLADEAVKAQGGRVILCNTLEPPRSIGSEAEARRNNSGGGRLASSIPENDDPIGWQTNGTISDPVPTVLSSSMG-------GQMCAFMRGYFEFLSETIISVRSVLDFMPAMRVAIVTHPRDFHVFNRSESFALSMRLTLAPSRIGPPNEFPKQSVEFGHLQHVSIGNSSSVEYGSLMADQLCGNGTRLIYYMEVGQVLSRTFTLKGTHTARQELIVSFADARDVHPENVRRAMGSTVLLGFPAPTFTHGSDLILPAETNGQLRALLGTKTRQGRRLEAGLHGAELDVEDLYAYLASVADLHRESTSIYVPEV 509          
BLAST of mRNA_C-linearis_contig83.16077.1 vs. uniprot
Match: D7FRS3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRS3_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 1.520e-116
Identity = 219/483 (45.34%), Postives = 279/483 (57.76%), Query Frame = 1
Query:  688 IANVGFHDVSQPEVGMAVSRNTLFIHGSTGGGGGTTNHAVAHAKARVAAVAPDCARACGGAGKLEI-SGMSTFCDASCLLRWSPAGPRFGGHGCGADDPTRFGEDCRRCYTSQEAALAEERKLSSPDNMGPNTGVHVVMCSTGSPPAAKSECSDECVSTGDAVCDYRCGRGVYGDLHCNWRGLGQNCRFCFRDYFDAHLADEISKTNGSRVIMCDTHEPPLAIGSNPTLELGSVGKTEPPTA--LPSGAATEASAVDVASTA--LTDSAA--FSGNIARGEMCAFMVGYFAFLEETSVGVSSVLHFMPGMKVGIATHPTDFDVFNRTLGKFPTVSVINASRVEHSAVHADKACGPRTRLIYYMEVGEVLSRPFTPKDTHSSRGDLIVSFTSSESGHQECDRQAKAADILLGFYPPCFTYGSDLILPAELNQQLRGIVRARTR----TN-KGGPGNDLADDLTGDLAALAASHNEYASVHVPEV 2100
            I+NVGF DVS   V  A+S+ TLFIHGS+  GG     +   A A        C  ACG     ++ +G STFCD SC   WSPAGPR GGH CGA DP+++G  CR CYT+++ ALA +R L+S          HVVMC T  PP A S C+  C    D VCDYRCG G YGD +CNWRG+   CR CF +   A LADE++K +G RV+MC+THEPPL IGS     +   G     T   LPS  +++ S   + + A    D AA  + G   RG +CAFM G+   L ET V VSSVL  MPGM+V IAT    F  F R     P V++  +  V H A+ AD+ CG  TRLIYY+E G+V+SR FT KDTH+  G+LIVS  +++       R+A  + +LLG   P FT+GSDLILPAE N QLR ++ A  R    TN + G      + +   LA +A  H   AS++VPEV
Sbjct:   42 ISNVGFFDVSDKHVAQAISQETLFIHGSSHSGGSAAISSPPKASASDINTL-SCTGACGSEHSAQVRTGASTFCDESCSTGWSPAGPRLGGHNCGAGDPSQYGSTCRLCYTNEDEALAADRTLASLSTDPSTPDAHVVMCDTTQPPQA-SRCTTACQDMADTVCDYRCGSGRYGDFNCNWRGVDSTCRLCFHETSVALLADEVAKAHGGRVVMCNTHEPPLPIGSKTKATVEDTGHRSADTGDGLPSAVSSQESKRKLLAVADESNDPAATAYIGTTTRGHICAFMRGFVELLPETKVSVSSVLELMPGMRVAIATDAAGFQEFARAFAHLPDVAIELSKSVSHGALIADEVCGKGTRLIYYIEAGQVVSRTFTEKDTHTVLGNLIVSLANADEVPPVYARRALGSTVLLGVTTPTFTHGSDLILPAETNAQLRAVLGANQRLVAQTNAEDGDTGRQTERVYEYLADVAKMHRGSASIYVPEV 522          
BLAST of mRNA_C-linearis_contig83.16077.1 vs. uniprot
Match: A0A6H5KI77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI77_9PHAE)

HSP 1 Score: 370 bits (949), Expect = 1.230e-109
Identity = 214/481 (44.49%), Postives = 267/481 (55.51%), Query Frame = 1
Query:  688 IANVGFHDVSQPEVGMAVSRNTLFIHGSTGGGGGTTNHAVAHAKARVAAVAPDCARACGGAGKLEISGMSTFCDASCLLRWSPAGPRFGGHGCGADDPTRFGEDCRRCYTSQEAALAEERKLSSPDNMGPNTGVHVVMCSTGSPPAAKSECSDECVSTGDAVCDYRCGRGVYGDLHCNWRGLGQNCRFCFRDYFDAHLADEISKTNGSRVIMCDTHEPPLAIGSNPT---LELGSVGKTEPPTALPSGAATEASAVDVASTALTDSAAFSGNIARGEMCAFMVGYFAFLEETSVGVSSVLHFMPGMKVGIATHPTDFDVFNRTLGKFPTVSVINASRVEHSAVHADKACGPRTRLIYYMEVGEVLSRPFTPKDTHSSRGDLIVSFTSSESGHQECDRQAKAADILLGFYPPCFTYGSDLILPAELNQQLRGIVRARTRTN---------KGGPGNDLADDLTGDLAALAASHNEYASVHVP 2094
            I NVGF DV+   V  A+ + TLFIHGST  GG   N       AR +    D   +    G                        RF GH CGA DP+ +G  CR CYT +E ALA +R L +  +     G HV+MC TG PP A S CS  C S  D VCD RCG G+YGD +C+W GLG  CR CF++   A  AD I+KT G RVI+C THEPPL++GS  +    +LG  G        P+    E+   D        +A + G+    +MC F+ GYF  L ET + VSSVL FMPGM+V +ATHP DF VFNRTLG  P V++ NASRVEH A+ AD+ CG  TRLIYYM VGEVLSR FT KDTH   GDLIVS T S     E  R+A  + +LLGF  P FTYG+DLILPAE N+QLR ++  + + N         K          +   LA++A SH   A++++P
Sbjct:   41 ITNVGFFDVNDTYVADAILQETLFIHGSTASGGRVANPTPKATPARFSRTCTDACSSVHSPGSXXXXXXXXXXXXXXXXXXXXX--RFRGHNCGAGDPSLYGSTCRSCYTDEEEALAADRSLGNASSDPLLAGAHVIMCDTGEPPQASS-CSPACRSMADTVCDSRCGTGLYGDYNCDWLGLGLTCRRCFQETSVAEFADSIAKTRGQRVILCATHEPPLSVGSLKSHIKAKLGHGGGXXGDANAPTTFPLESDTSD------RSTAVYVGSATIKQMCVFLRGYFDLLAETRLSVSSVLEFMPGMRVAVATHPRDFQVFNRTLGYLPDVTIENASRVEHGALIADQICGNGTRLIYYMNVGEVLSRTFTRKDTHGVLGDLIVSATDSAQVPLEHARRAAGSAVLLGFTTPAFTYGTDLILPAETNEQLRAVLHTKAKLNELVVVQAQGKHRRSRKKLGFMFEYLASVAHSHRSSATIYIP 512          
BLAST of mRNA_C-linearis_contig83.16077.1 vs. uniprot
Match: A0A6H5L131_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L131_9PHAE)

HSP 1 Score: 308 bits (790), Expect = 4.520e-91
Identity = 220/618 (35.60%), Postives = 305/618 (49.35%), Query Frame = 1
Query:  199 CFERTKAVFANLTK------QENVYPKGPSVMFYKMFLDRDVARALEGYDALAVVEWDVVVAHPTSFEMLYKSAFFSSEEFWMKGSTLAGAEFHETAGLSEMWHILGHLNGNAIYNNTDPGFHEFVNFTLNRWQYQYSYDVALWATIADFPYSWPLWQRYSSKFVATQLIANVG-FHDVSQPEVGMAVSRNTLFIHGSTGGGGGTTNHAVAHAKARVAAVAPDCARACGGAGKLEISGMSTFCDASCLLRWSPAGPRFGGHGCGADD------PTRFGEDCRRCYTSQEAALAEERKLSSPDNMGPNTGVHVVMCSTGSPPAAKSECSDECVSTGDAVCDYRCGR-GVYGDLHCNWR--GLGQNCRFCFRDYFDAHLADEISKTNGSRVIMCDTHEPP------LAIGSNP-TLELGSVGKTEPPTALPSGAATEASAVDVASTALT--DSAA---FSGNIARGEMCAFMVGYFAFLEETSVGVSSVLHFMPGMKVGIATHPTDFDVFNRTLGKFPTVSVINASRVEHSAVHADKACGPRTRLIYYMEVGEVLSRPFTPKDTHSSRGDLIVSFTSSESGHQECDRQAKAADILLGFYPPCFTYGSDLILPAELNQQLR 1968
            CF         LTK      Q++VYPK PS+MFYKMFLD  V  +L  YDAL+++E DV+VA   SFE LY +AF  +EEFW+KGS L G  F  +A  SEMW +LGH+NGNAIYNN DP F E+V +T  RW Y++ YDVALW TI+DFPYS PL+QRYSSKFV T L+ N   +  + +P+ G  +  N   ++  +     T + ++  A   V  V              +IS +         +  + AG     HG    D      P                           +    N G   + C+ G     K   +D    T   VCD  C R  V+G L C  +    G  CR C+ D  +AH  D    T G+R IMC T  P       L+I +   +L++G   + E       G+        V    ++  + AA   F  ++ RG +CAF+ G         V V S+L FMPGM+V IA      D + R++G  P V++ +      +++ AD+ CG  T LI Y+E G VLSRPFT KDTHS RGDL+V     +  ++  D +++ + ++LG   P FT G+DL+LP   N+ LR
Sbjct:    7 CFSCALQDMCALTKTDLSIAQDDVYPKAPSIMFYKMFLDESVRFSLSEYDALSIIEPDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFPSSAEASEMWQVLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSRPLYQRYSSKFVVTNLVGNYSRYTTMIRPQPGEGMRPNPPPLYWVSNNNSPTVDFSMP-APLHVRYV-------------FKISYVGDEHVTQDTVSDAVAGKTLFIHGGDVADVITASAPXXXXXXXXXXXXXXXXXXXXXXXXXRGNRRRGNDGDETLKCTDG----CKYTSND---GTRGRVCDANCSRRDVHGTLGCGTKDGAYGTECRACYNDGDEAHKQD----TPGNRAIMCSTVMPVDVRSLWLSIDNEDYSLQIGQAMEGEDGEEEVEGSFERVGVDGVREGVISFFEEAAERPFFQDLKRGNLCAFVGGRVDEEAMWEVTVKSILQFMPGMRVAIAAGAKGLDAYERSMGGRPGVTISSTQNPATASLFADRFCGAGTALILYVEPGSVLSRPFTFKDTHSPRGDLLVVHGGGQGSYRN-DERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLR 598          
BLAST of mRNA_C-linearis_contig83.16077.1 vs. uniprot
Match: A0A6H5LJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJP6_9PHAE)

HSP 1 Score: 308 bits (789), Expect = 5.690e-88
Identity = 180/449 (40.09%), Postives = 235/449 (52.34%), Query Frame = 1
Query:    4 RNLAVVVPTHSGDLEGAIAALELWPKVCSAPTLHHMHLVVYYSGSAGDGVWNEDIISTVARTGGRCFERTKAVFANLTKQENVYPKGPSVMFYKMFLDRDVARALEGYDALAVVEWDVVVAHPTSFEMLYKSAFFSSEEFWMKGSTLAGAEFHETAGLSEMWHILGHLNGNAIYNNTDPGFHEFVNFTLNRWQYQYSYDVALWATIADFPYSWPLWQRYSSKFVATQLIANVGFHDVSQPEVGMAVSRNTLFIHGSTGGGGGTTNHAVAHAKARVAAVAPDCARACGGAGKLEISGMSTFCDASCLLRWSPAGPRFGGHGCGADDPTRFGEDCRRCYTSQEAALAEERKLSSPDNMGPNTGVHVVMCSTGSPPAAKSECSDECVSTGDAVCDYRCGRG-VYGDLHCNWRG--LGQNCRFCFRDYFDAHLADEISKTNGSRVIMCDTHEP 1341
            + L VVVPT+ GDL  A+++LE WP  CS  TL +  LV+YY+            + +++ T GRCF RT+ VFANL +++++YP+GPSVMFY MFLD DV  +L  YDAL+++EWDV+VA   SFE LY +AF  +EEFW+KGS L G  FH  A   EMW +LGH+NGNAIYNN DP F E+V +T  RW Y++ YDVALW TI+DFPYSWPL+QRYSSKFV T LI++VG+  V+   V  A++ NTLFIHGS+   G   ++      A V   A           +     +  + +     +W  +              T  G                     SPD  G         C  G    +K         T   VCD  C R   YG L C  +    G +CR C+ D   A   D    T  +R IMC T  P
Sbjct:   28 QQLGVVVPTYKGDLARAVSSLERWPAKCSPLTLENADLVLYYAEEESSAT--ASALDSISSTAGRCFARTRIVFANLAEEDDIYPQGPSVMFYNMFLDEDVRSSLSEYDALSIIEWDVLVASDNSFEELYHAAFRVNEEFWVKGSNLEGTSFHSNADAIEMWQLLGHINGNAIYNNDDPAFVEYVEYTRARWGYEHPYDVALWMTISDFPYSWPLYQRYSSKFVVTNLISSVGYEHVNHDTVSDAIAGNTLFIHGSSVDEGNVASYEATEGDASVDVTATQ---------RHLTEDVPKWKEQE---KWKTSXXXXXXXXXXXXXETDDG-----VXXXXXXXXXXXXXXXSPDEEG---------CMNGCEYTSKD-------GTRGRVCDSNCSRSDAYGTLGCGAKSGKYGADCRACYNDVEKARKQD----TPANRAIMCSTKMP 437          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZV7_9PHAE3.070e-17440.79Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LCC7_ECTSI8.430e-16243.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6N3_9PHAE1.030e-15337.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JKY0_9PHAE9.660e-15040.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKL9_ECTSI1.120e-12145.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0V3_9PHAE1.230e-12146.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRS3_ECTSI1.520e-11645.34Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KI77_9PHAE1.230e-10944.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L131_9PHAE4.520e-9135.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LJP6_9PHAE5.690e-8840.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:729946..736049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score320.9
Seed ortholog evalue1.5e-84
Seed eggNOG ortholog2880.D7FI37
Hectar predicted targeting categoryother localisation
EggNOG OGs2D0G2@1,2SE3H@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size2109
Cds size2109
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930628.8192132-CDS-C-linearis_contig83:729945..7304111622930628.8192132-CDS-C-linearis_contig83:729945..730411Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 729946..730411 -
1690881167.562649-CDS-C-linearis_contig83:729945..7304111690881167.562649-CDS-C-linearis_contig83:729945..730411Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 729946..730411 -
1622930628.8345144-CDS-C-linearis_contig83:730958..7314311622930628.8345144-CDS-C-linearis_contig83:730958..731431Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 730959..731431 -
1690881167.5754194-CDS-C-linearis_contig83:730958..7314311690881167.5754194-CDS-C-linearis_contig83:730958..731431Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 730959..731431 -
1622930628.8519778-CDS-C-linearis_contig83:731894..7323771622930628.8519778-CDS-C-linearis_contig83:731894..732377Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 731895..732377 -
1690881167.5859947-CDS-C-linearis_contig83:731894..7323771690881167.5859947-CDS-C-linearis_contig83:731894..732377Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 731895..732377 -
1622930628.8671463-CDS-C-linearis_contig83:732974..7330681622930628.8671463-CDS-C-linearis_contig83:732974..733068Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 732975..733068 -
1690881167.598521-CDS-C-linearis_contig83:732974..7330681690881167.598521-CDS-C-linearis_contig83:732974..733068Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 732975..733068 -
1622930628.8883889-CDS-C-linearis_contig83:733307..7333771622930628.8883889-CDS-C-linearis_contig83:733307..733377Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 733308..733377 -
1690881167.6078272-CDS-C-linearis_contig83:733307..7333771690881167.6078272-CDS-C-linearis_contig83:733307..733377Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 733308..733377 -
1622930628.908803-CDS-C-linearis_contig83:735304..7355841622930628.908803-CDS-C-linearis_contig83:735304..735584Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 735305..735584 -
1690881167.617012-CDS-C-linearis_contig83:735304..7355841690881167.617012-CDS-C-linearis_contig83:735304..735584Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 735305..735584 -
1622930628.9496622-CDS-C-linearis_contig83:735806..7360491622930628.9496622-CDS-C-linearis_contig83:735806..736049Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 735807..736049 -
1690881167.6260262-CDS-C-linearis_contig83:735806..7360491690881167.6260262-CDS-C-linearis_contig83:735806..736049Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 735807..736049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16077.1prot_C-linearis_contig83.16077.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig83 729946..736049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig83.16077.1

>prot_C-linearis_contig83.16077.1 ID=prot_C-linearis_contig83.16077.1|Name=mRNA_C-linearis_contig83.16077.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=703bp
MRNLAVVVPTHSGDLEGAIAALELWPKVCSAPTLHHMHLVVYYSGSAGDG
VWNEDIISTVARTGGRCFERTKAVFANLTKQENVYPKGPSVMFYKMFLDR
DVARALEGYDALAVVEWDVVVAHPTSFEMLYKSAFFSSEEFWMKGSTLAG
AEFHETAGLSEMWHILGHLNGNAIYNNTDPGFHEFVNFTLNRWQYQYSYD
VALWATIADFPYSWPLWQRYSSKFVATQLIANVGFHDVSQPEVGMAVSRN
TLFIHGSTGGGGGTTNHAVAHAKARVAAVAPDCARACGGAGKLEISGMST
FCDASCLLRWSPAGPRFGGHGCGADDPTRFGEDCRRCYTSQEAALAEERK
LSSPDNMGPNTGVHVVMCSTGSPPAAKSECSDECVSTGDAVCDYRCGRGV
YGDLHCNWRGLGQNCRFCFRDYFDAHLADEISKTNGSRVIMCDTHEPPLA
IGSNPTLELGSVGKTEPPTALPSGAATEASAVDVASTALTDSAAFSGNIA
RGEMCAFMVGYFAFLEETSVGVSSVLHFMPGMKVGIATHPTDFDVFNRTL
GKFPTVSVINASRVEHSAVHADKACGPRTRLIYYMEVGEVLSRPFTPKDT
HSSRGDLIVSFTSSESGHQECDRQAKAADILLGFYPPCFTYGSDLILPAE
LNQQLRGIVRARTRTNKGGPGNDLADDLTGDLAALAASHNEYASVHVPEV
CM*
back to top

mRNA from alignment at C-linearis_contig83:729946..736049-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig83.16077.1 ID=mRNA_C-linearis_contig83.16077.1|Name=mRNA_C-linearis_contig83.16077.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6104bp|location=Sequence derived from alignment at C-linearis_contig83:729946..736049- (Chordaria linearis ClinC8C monoicous)
ATGAGGAACCTAGCAGTAGTCGTACCAACGCACTCGGGGGACTTGGAGGG TGCAATTGCGGCGTTAGAGTTGTGGCCGAAGGTTTGTTCAGCACCGACCC TCCATCACATGCACCTCGTCGTGTACTACAGTGGAAGCGCGGGAGACGGG GTGTGGAATGAAGATATAATTTCCACTGTAGCGCGGACGGGTGGGCGCTG CTTCGAGCGGACAAAGGCCGTCTTCGCGAACCTGACTAAACAGGTGACGC GATCTACGTGCGTGCTTGGTTGGCCAGTGCTATAGTTTGATTGTATTCCA GACTTTTATGTTTGGTGGGTCTAAAATATTGCCGACGTACACTTTGTTAT CGTATGTTGCCGCGGCAGTCGCGTCACAGCGCCCCCAAACGATGTTGTTG CACTATTACTTCGTTCCTGGTGTGTTTTAAGTGAAACGTCTGTCTGTTGA TGCGCTGCGTTCCAGGAAAACGTTTACCCGAAAGGCCCCAGCGTCATGTT TTACAAGATGTTTTTGGACCGCGACGTGGCCCGAGCTTTGGAAGGTTATG ACGCCCTTGCTGTTGTCGAGTGGGATGTCGTGGTGGCCCATCCTACGAGC TTTGAAATGCTCTACAAGTCTGCTTTCTTCTCTTCGGAAGAATTCTGGAT GAAAGGGAGCACGCTGGCCGGAGCTGAGTTTCATGAAACTGCGGGCCTGT CAGAGATGTGGCATATCCTAGGACATCTCAATGGGAACGCGATTTGTGAG TCGTGACGCAATTGGTTCTTTTGGTCGGTTAGTGGTACGTGGACAGGGAG GGTGCTCAGCATTTGAACAACAACAACAGCAGTTTTATCGACGAGTCATT ATGTAGTGTGCACCCAGGGTGTGTCTTCACATACATACGAAGTCTAATAT ATAATCCGATCGAAAATCGAAATGCAATCGATATCGGAGCGGCGAAATAT CGCGATTGGTCAACGTGGCACCCAGTGGCCACCGAGATTTCGAGACCAAC CAGCCTTCTGTTCCGAATCATTTCCCTGTTGTTGTTCGCAAAAATCGAAA CAAAAGATAAAAAGTCTACTAGGAGACGAACGGACGTAGGAGGGCCAGGA CAGGCGCCCTCAAATTCGCACATGTCTTCCCTTGACCCTCATCCTGCAAC TTACAAACAGCTCCGCGACACATGGTTTACCTTCGGATGGCGCTGACATC CTGTACAACACGGCATTTGAAAGAAAACTCGCGCCAACTTGAAGATACAT ACAGCCATCGGCGTGAATTTTACAAGTTGGTTCAACGGCGGCTTTTTTTT CTTTTTTGCCTCTCGGGCGTCACACCGCAGCGTTCAATCACACTTTCATA CATCGCGAGACAAAAACGGCATCTATGTGCACGCCCCAACCAGGCGGTTG TCCGGAGCCATATTTCGTTGTCTAGGATACCCTGTAGCCCTCAGGTCATT TGTTAGATATGTACTTCCTCTGTCACATAAGTAAAAGTCCGTTTGTTTGT ACGAGCCATTAACGGTATCCGATTTGATTTTCGTTTTTTTATTGCAATCG TTGGCGTTTTTTGAGCTAAAAACAGCGCTCTTTTCTACCACGTGGGCGCT TGAACAGTGCAGCCTCGCGGCCGAGAAAAAGCAGGTCGGAAAAAAAATGG CCATTTTTCGCTGATTTTCCCAGGAAAGCATGGGGAGACTCGGGAACACG GAAAATCGAGAAAAAATGTGAAAAAAATGTGAAAATCGCAAAAAAACAAC CAATCATTGATTTTGGATATCTATCTCCGTGACGTTATCCTACATACGTC CCATCTTACAATTTGTCAGCATGTAATCGCTAGCGTTCGACGAAAAAACG TCAAAAATCGGACAATAATGGGATAGGAGTGGTGGACAAAAAAGGCCCAA AATGGGGTATATTCTGACCTACCTAGTAGTATTATTATTGAAAACCACCT TCGATTTTTTTTTTTCATGAGTTTCGCCTGCGCCTTGTCTTTCTAACGCA CGCAACTATAATATCAACGTCAACCAGGGGGTACTGAAACGACTAAGTGC CCATAACGGCACAGACTTATGGGACAGAGGAAGTATAACAACAACACTGC AATGATGATCAATTTCGGGCCTTTCTTTTTGCCCTGCTGCTATTTTCGGT TTTCTGACCGTTTGTTAAGGCCCACCCTACCACAACAACAGCACAAAAGT GGAGAATAGAGCGTACGGTGCGGCTCGATTCGCCGGAAAGGCAATCGGCG TGCGTTTTTTTTCATCCACAACTTCAGCAGGATAGTAGATTTAGGTATTA TTGTAGCCTTTTTGTTGCACAAGCAGAGCCAATTTTTCGCAGGGCTCCTC ATTTAAACTAGATTTTCGTGGACCACGGGATACATCGCCGAGAAATGATG GGAAAATAACGTGAGCTTTCTGGAAACGCGAGAGGGAAAACGTGCGTTCG ATCCCGCCGACGTATTCAAAGTCGCGGAGGATATAGAGAAGCTCACGTTC GGTTTTTCTGTGCGAGGCCTGCTCTTTAATTTATAAGATGATGCTGTGAC ATTGTTCCTAATTTACAGCAGCAGCAGCAAGCAGTTGATAACGGTTGCAA GTAGTTTCGCTCACTCACACTCTGTTGTTGTTATCTCTTTTTCGATTCCT TGTACACCTTGCGTCCAAACAGACAACAACACGGATCCAGGGTTCCACGA GTTCGTCAACTTCACCCTGAACCGGTGGCAGTATCAATACTCGTAAGTGG CATTGCCCGTTGCTCCAGAACACCATTAAGAAAGTCAATCTATTTGCGTT CGATGTTATTTTTTCTCCAAGCAAGGAGAAAAGGAAAGGAATCTTGGTCT TTTCGCGTCGCGTGTGCGTTTCTGCTTTGAAGCCATCTTCACGTAGATGT CACCAAGCGCTCGAAGACAACAAAACAACCCGTCGTTGAACATCCGTCCG CATCAACCTGACTGAGTGTTTGCTGCTGCAGGTATGACGTTGCGCTGTGG GCCACGATAGCGGACTTCCCATACAGCTGGCCGCTTTGGCAGCGATACTC GTCTAAATTCGTGGCGACTCAGTTGGTGAGATTGCGGTGTTCCGTATTCT TCGAAGTTTCCGACGAAAAACCCTTGTCAGCCCTGGCCTCTCCATAGATG CCGGCGTAGATATTTCAGAGCTGGCGAGGCCGCTGCCATCCTCAGAATGT ACATTGTTTTCGGTCACATACGGAGACCATTCATTGCGAAACAAGTCCAC GGTGGTCCGCTTGGCGAGTCCGGACGGCGCCTGACAAAGTTGAAACGAAA CTCGAGTGCCACCGCATACTTTTGTGCATGGCAGAGCAAGACGCCGTACG TACTGAGTTACAGCTGTAGGGCACAGAAGCTCGACCACATGTATGTTCGA GCCAAATTTCTTACATACATGGGTGCCTGTTTCTTGCCGATTCCAATCGT TAATTGTCTTGCACCGGGTCTCCTTGTGAATCGCATAGATAGACAACGCC CTTTCGCTGTCACGCCCGCTGGACTGGTGTAAAACGCAACATTTGTCGTT CAGTCCTGGAAGAATTCAAGCTATGAATGCCGCACCAACTTCGCCGTTTC AAACAACACAGAGAGGATTGCTGACCCATCATGTAAATCTGTCTACTGCA TGCTGTACATCGGTGAACCCAGATTGCCAACGTTGGGTTCCACGACGTCA GCCAACCAGAGGTGGGCATGGCCGTTTCGCGCAACACGCTGTTCATTCAT GGTAGCACTGGCGGGGGGGGTGGCACCACTAATCACGCCGTCGCTCACGC GAAGGCGAGAGTGGCTGCTGTTGCTCCCGACTGCGCGAGAGCTTGCGGCG GGGCGGGCAAACTTGAAATCTCTGGTATGTCGACCTTTTGCGACGCCAGC TGTTTGCTTAGGTGGTCGCCGGCGGGACCACGCTTTGGGGGTCATGGGTG CGGTGCAGATGACCCAACACGGTTTGGCGAAGACTGTAGGCGGTGTTACA CAAGCCAGGAGGCCGCTCTGGCTGAAGAGCGGAAGCTTTCGTCGCCGGAC AACATGGGCCCCAACACGGGCGTGCATGTTGTCATGTGTTCCACGGGGAG CCCGCCTGCAGCAAAGTCCGAGTGCTCAGACGAGTGCGTGAGCACTGGTG ATGCGGTAAGGCTGCACCAATAGTCTTGGGTGTATTGCATGGTTGTGTTG TACCTTCTGTTGTTGTCGCATGGATGCCACCGCCAATGTCCATAGCGTGT TACAATAAGAGGTGGACAACGTCGATCAATGTGTGACCTTTTTGATCAGG TCGCGAGAACCAAAACTATACCAGTAGTCTAGATGTGTATGTGCCGCGCT GTTTTTGTAATTTTCTACCTAGACGCCCACGGTATACCTCCGATCTGTGA GTAGATCGTTCCAGGGGGGCTGTTTTATTCGCACTTATACTCATACGCAG GACGTGGTTCCTCGTGTCAACTAAGTAGTGGGATACACCTGAAAATTCAT TCTGTGTACCGACTTTCGCGCGTAAACCGACCTTGTATGATGCACCGAAG AACACCGACCCACAACAGAGTATACAGTAGTAGATATCACCATGTGCACC ACCTGCTCACTGGACAAGGTGTGCGACTATCGGTGTGGAAGGGGGGTCTA CGGGGACTTACACTGCAACTGGAGGGGTCTCGGGCAGAATTGCCGCTTCT GCTTTCGAGACTATTTTGATGCTCATCTGGCGGACGAGATCTCAAAAACT AACGGGTCAAGGGTAATTATGTGCGACACACATGAGCCACCACTCGCGAT CGGGTCCAATCCGACGCTAGAACTTGGAAGCGTGGGCAAGACCGAACCTC CTACAGCATTACCCTCGGGAGCTGCCACCGAGGCGTCTGCAGTCGACGTC GCTTCTACTGCTTTAACCGACTCTGCTGCTTTTAGCGGCAATATCGCGCG TGGTGAGATGTGCGCGTTTATGGTCGGGTACTTCGCGTTCTTGGAAGAAA CCAGCGTTGGCGTCTCCAGTGTGCTCCACTTCATGCCCGGCATGAAGGTT GGGATCGCTACCCATCCCACGGACTTTGACGTTTTCAACAGGTGAGAACA CGCGTCACCTGCCGGTTTCTTCCCACGTGTGTATATTCATTTTTTTCGCA GAAAAATCGCAAGAATTGCCATCGCAAAACTTAGGGAAGTAGGAGTCTGC TGCTACTGCTGTAATCGCCGATTTTTGGGTCAGTGTGAGTCTTTCCAAGT TAGCCCCGACCCTTACAAACCAAAGCATCGGGGGTAAATGTTGACAGCTC ATTCGCAAACCGAATACTGAGTTCTTTGAGGAGTCCAGGATGGTGTCGTT GACCGGAACACTACCACCGCAGAAACCCAGATTACCGTGTTTGTTTACAT GTGAGGTCGAATTCACGACGCATCGGGTGATTATGTACATTTTGGTTCGA GATTCTGCGACGTGATGAAGCAAATCCGTTCACCTTTTGACTTTCTGGGA TAAACACACATTGTTTTTGTCCCCCGCCTTACCAGGGCTTCATTTCCGAT GTGGGATGCAGACCTTACAGAGTAGCACAAAATCCCACCGTCACGCACTG ACTTTAGCGCCACCACCCGTTTTGCTTTCAACGCTCAGAACACTGGGAAA GTTCCCAACGGTGTCTGTCATCAACGCCAGTCGTGTGGAGCATTCTGCCG TGCATGCGGACAAGGCTTGCGGGCCTAGGACACGCTTGATATATTACATG GAAGTTGGTGAGGTCCTCAGCCGACCTTTCACGCCAAAGGATACGCATTC GTCCCGAGGTGATCTGATAGTTTCGTTCACCAGCTCAGAAAGCGGCCATC AGGAATGCGATCGTCAGGCGAAGGCCGCCGACATTCTGTTGGGGTTCTAC CCACCGTGCTTCACGTACGGAAGTGATTTGATTCTCCCAGCCGAACTTAA TCAACAGCTCCGGGGGATTGTGCGCGCAAGGACAAGAACCAATAAGGGCG GGCCAGGCAACGATCTTGCCGACGATCTTACGGGCGACTTGGCCGCGTTA GCTGCGTCCCACAATGAATACGCGAGTGTCCACGTTCCTGAGGTATGTAT GTGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig83:729946..736049-

>mRNA_C-linearis_contig83.16077.1 ID=mRNA_C-linearis_contig83.16077.1|Name=mRNA_C-linearis_contig83.16077.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4218bp|location=Sequence derived from alignment at C-linearis_contig83:729946..736049- (Chordaria linearis ClinC8C monoicous)
ATGAGGAACCTAGCAGTAGTCGTACCAACGCACTCGGGGGACTTGGAGGG
TGCAATTGCGGCGTTAGAGTTGTGGCCGAAGGTTTGTTCAGCACCGACCC
TCCATCACATGCACCTCGTCGTGTACTACAGTGGAAGCGCGGGAGACGGG
GTGTGGAATGAAGATATAATTTCCACTGTAGCGCGGACGGGTGGGCGCTG
CTTCGAGCGGACAAAGGCCGTCTTCGCGAACCTGACTAAACAGATGAGGA
ACCTAGCAGTAGTCGTACCAACGCACTCGGGGGACTTGGAGGGTGCAATT
GCGGCGTTAGAGTTGTGGCCGAAGGTTTGTTCAGCACCGACCCTCCATCA
CATGCACCTCGTCGTGTACTACAGTGGAAGCGCGGGAGACGGGGTGTGGA
ATGAAGATATAATTTCCACTGTAGCGCGGACGGGTGGGCGCTGCTTCGAG
CGGACAAAGGCCGTCTTCGCGAACCTGACTAAACAGGAAAACGTTTACCC
GAAAGGCCCCAGCGTCATGTTTTACAAGATGTTTTTGGACCGCGACGTGG
CCCGAGCTTTGGAAGGTTATGACGCCCTTGCTGTTGTCGAGTGGGATGTC
GTGGTGGCCCATCCTACGAGCTTTGAAATGCTCTACAAGTCTGCTTTCTT
CTCTTCGGAAGAATTCTGGATGAAAGGGAGCACGCTGGCCGGAGCTGAGT
TTCATGAAACTGCGGGCCTGTCAGAGATGTGGCATATCCTAGGACATCTC
AATGGGAACGCGATTTGAAAACGTTTACCCGAAAGGCCCCAGCGTCATGT
TTTACAAGATGTTTTTGGACCGCGACGTGGCCCGAGCTTTGGAAGGTTAT
GACGCCCTTGCTGTTGTCGAGTGGGATGTCGTGGTGGCCCATCCTACGAG
CTTTGAAATGCTCTACAAGTCTGCTTTCTTCTCTTCGGAAGAATTCTGGA
TGAAAGGGAGCACGCTGGCCGGAGCTGAGTTTCATGAAACTGCGGGCCTG
TCAGAGATGTGGCATATCCTAGGACATCTCAATGGGAACGCGATTTACAA
CAACACGGATCCAGGGTTCCACGAGTTCGTCAACTTCACCCTGAACCGGT
GGCAGTATCAATACTCACAACAACACGGATCCAGGGTTCCACGAGTTCGT
CAACTTCACCCTGAACCGGTGGCAGTATCAATACTCGTATGACGTTGCGC
TGTGGGCCACGATAGCGGACTTCCCATACAGCTGGCCGCTTTGGCAGCGA
TACTCGTCTAAATTCGTGGCGACTCAGTTGGTATGACGTTGCGCTGTGGG
CCACGATAGCGGACTTCCCATACAGCTGGCCGCTTTGGCAGCGATACTCG
TCTAAATTCGTGGCGACTCAGTTGATTGCCAACGTTGGGTTCCACGACGT
CAGCCAACCAGAGGTGGGCATGGCCGTTTCGCGCAACACGCTGTTCATTC
ATGGTAGCACTGGCGGGGGGGGTGGCACCACTAATCACGCCGTCGCTCAC
GCGAAGGCGAGAGTGGCTGCTGTTGCTCCCGACTGCGCGAGAGCTTGCGG
CGGGGCGGGCAAACTTGAAATCTCTGGTATGTCGACCTTTTGCGACGCCA
GCTGTTTGCTTAGGTGGTCGCCGGCGGGACCACGCTTTGGGGGTCATGGG
TGCGGTGCAGATGACCCAACACGGTTTGGCGAAGACTGTAGGCGGTGTTA
CACAAGCCAGGAGGCCGCTCTGGCTGAAGAGCGGAAGCTTTCGTCGCCGG
ACAACATGGGCCCCAACACGGGCGTGCATGTTGTCATGTGTTCCACGGGG
AGCCCGCCTGCAGCAAAGTCCGAGTGCTCAGACGAGTGCGTGAGCACTGG
TGATGCGATTGCCAACGTTGGGTTCCACGACGTCAGCCAACCAGAGGTGG
GCATGGCCGTTTCGCGCAACACGCTGTTCATTCATGGTAGCACTGGCGGG
GGGGGTGGCACCACTAATCACGCCGTCGCTCACGCGAAGGCGAGAGTGGC
TGCTGTTGCTCCCGACTGCGCGAGAGCTTGCGGCGGGGCGGGCAAACTTG
AAATCTCTGGTATGTCGACCTTTTGCGACGCCAGCTGTTTGCTTAGGTGG
TCGCCGGCGGGACCACGCTTTGGGGGTCATGGGTGCGGTGCAGATGACCC
AACACGGTTTGGCGAAGACTGTAGGCGGTGTTACACAAGCCAGGAGGCCG
CTCTGGCTGAAGAGCGGAAGCTTTCGTCGCCGGACAACATGGGCCCCAAC
ACGGGCGTGCATGTTGTCATGTGTTCCACGGGGAGCCCGCCTGCAGCAAA
GTCCGAGTGCTCAGACGAGTGCGTGAGCACTGGTGATGCGGTGTGCGACT
ATCGGTGTGGAAGGGGGGTCTACGGGGACTTACACTGCAACTGGAGGGGT
CTCGGGCAGAATTGCCGCTTCTGCTTTCGAGACTATTTTGATGCTCATCT
GGCGGACGAGATCTCAAAAACTAACGGGTCAAGGGTAATTATGTGCGACA
CACATGAGCCACCACTCGCGATCGGGTCCAATCCGACGCTAGAACTTGGA
AGCGTGGGCAAGACCGAACCTCCTACAGCATTACCCTCGGGAGCTGCCAC
CGAGGCGTCTGCAGTCGACGTCGCTTCTACTGCTTTAACCGACTCTGCTG
CTTTTAGCGGCAATATCGCGCGTGGTGAGATGTGCGCGTTTATGGTCGGG
TACTTCGCGTTCTTGGAAGAAACCAGCGTTGGCGTCTCCAGTGTGCTCCA
CTTCATGCCCGGCATGAAGGTTGGGATCGCTACCCATCCCACGGACTTTG
ACGTTTTCAACAGGTGTGCGACTATCGGTGTGGAAGGGGGGTCTACGGGG
ACTTACACTGCAACTGGAGGGGTCTCGGGCAGAATTGCCGCTTCTGCTTT
CGAGACTATTTTGATGCTCATCTGGCGGACGAGATCTCAAAAACTAACGG
GTCAAGGGTAATTATGTGCGACACACATGAGCCACCACTCGCGATCGGGT
CCAATCCGACGCTAGAACTTGGAAGCGTGGGCAAGACCGAACCTCCTACA
GCATTACCCTCGGGAGCTGCCACCGAGGCGTCTGCAGTCGACGTCGCTTC
TACTGCTTTAACCGACTCTGCTGCTTTTAGCGGCAATATCGCGCGTGGTG
AGATGTGCGCGTTTATGGTCGGGTACTTCGCGTTCTTGGAAGAAACCAGC
GTTGGCGTCTCCAGTGTGCTCCACTTCATGCCCGGCATGAAGGTTGGGAT
CGCTACCCATCCCACGGACTTTGACGTTTTCAACAGAACACTGGGAAAGT
TCCCAACGGTGTCTGTCATCAACGCCAGTCGTGTGGAGCATTCTGCCGTG
CATGCGGACAAGGCTTGCGGGCCTAGGACACGCTTGATATATTACATGGA
AGTTGGTGAGGTCCTCAGCCGACCTTTCACGCCAAAGGATACGCATTCGT
CCCGAGGTGATCTGATAGTTTCGTTCACCAGCTCAGAAAGCGGCCATCAG
GAATGCGATCGTCAGGCGAAGGCCGCCGACATTCTGTTGGGGTTCTACCC
ACCGTGCTTCACGTACGGAAGTGATTTGATTCTCCCAGCCGAACTTAATC
AACAGCTCCGGGGGATTGTGCGCGCAAGGACAAGAACCAATAAGGGCGGG
CCAGGCAACGATCTTGCCGACGATCTTACGGGCGACTTGGCCGCGTTAGC
TGCGTCCCACAATGAATACGCGAGTGTCCACGTTCCTGAGGTATGTATGT
GAAACACTGGGAAAGTTCCCAACGGTGTCTGTCATCAACGCCAGTCGTGT
GGAGCATTCTGCCGTGCATGCGGACAAGGCTTGCGGGCCTAGGACACGCT
TGATATATTACATGGAAGTTGGTGAGGTCCTCAGCCGACCTTTCACGCCA
AAGGATACGCATTCGTCCCGAGGTGATCTGATAGTTTCGTTCACCAGCTC
AGAAAGCGGCCATCAGGAATGCGATCGTCAGGCGAAGGCCGCCGACATTC
TGTTGGGGTTCTACCCACCGTGCTTCACGTACGGAAGTGATTTGATTCTC
CCAGCCGAACTTAATCAACAGCTCCGGGGGATTGTGCGCGCAAGGACAAG
AACCAATAAGGGCGGGCCAGGCAACGATCTTGCCGACGATCTTACGGGCG
ACTTGGCCGCGTTAGCTGCGTCCCACAATGAATACGCGAGTGTCCACGTT
CCTGAGGTATGTATGTGA
back to top