mRNA_C-linearis_contig83.16073.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig83.16073.1
Unique NamemRNA_C-linearis_contig83.16073.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig83.16073.1 vs. uniprot
Match: D7FM02_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM02_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 1.760e-87
Identity = 152/235 (64.68%), Postives = 176/235 (74.89%), Query Frame = 1 
Query:   49 MSYPTNNNTQWEPPEVE----TMVLPPRRRSIIREEDEDGN-FEEKT-APLERWSQPSLCPCKNPSIMAYSLACCCCAMGDIGCYVRENWMCYPAYCLCASCPCCVGDTRELVAEKYNLPISEWEPDDCGWCLVKFIGMRLMCVASVCLLPCFHVAQMRAEVAFRRHGKPTVCPCXXXXXXXXXXPGVSSAKDEELDYPRNEDVKRVVTKEEVLDYPRAGAKTYEDSPPEEEVEV 735
            MSYPTN+N+ WEPP       T+VL PRRRSIIR+E+ +G   EEK   PL RW Q SLCPC+NP+IM YSL     AMGDIGCY+RENWMCYPAYCL ASCPCCVGDTRELVAEKYNLPI  W+PD+ GWC VK IG RLMC  SVCL+PC H++QMRAEVAFR+HGK TVCP XXXXXXXXXX G ++ K+EELDYPR++ VKR    E        G +   +  PE+EV+V
Sbjct:    1 MSYPTNDNSGWEPPSRRPSEGTIVLAPRRRSIIRDEEGEGEGVEEKPDPPLGRWHQHSLCPCRNPNIMLYSLCXXXXAMGDIGCYLRENWMCYPAYCLGASCPCCVGDTRELVAEKYNLPIVSWDPDEFGWCFVKMIGARLMCFCSVCLMPCLHISQMRAEVAFRKHGKATVCPXXXXXXXXXXXXGETTYKEEELDYPRDDGVKRPHAIEXXXXXXXGGKRV--ELTPEKEVKV 233
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM02_ECTSI1.760e-8764.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:694986..697967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-22_000370.1
Exons3
Model size1533
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16073.1prot_C-linearis_contig83.16073.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig83 695700..697919 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930628.1253655-UTR-C-linearis_contig83:694985..6956991622930628.1253655-UTR-C-linearis_contig83:694985..695699Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 694986..695699 -
1690881167.1472049-UTR-C-linearis_contig83:694985..6956991690881167.1472049-UTR-C-linearis_contig83:694985..695699Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 694986..695699 -
1622930628.2055993-UTR-C-linearis_contig83:697919..6979671622930628.2055993-UTR-C-linearis_contig83:697919..697967Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 697920..697967 -
1690881167.1987138-UTR-C-linearis_contig83:697919..6979671690881167.1987138-UTR-C-linearis_contig83:697919..697967Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 697920..697967 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930628.1473808-CDS-C-linearis_contig83:695699..6962241622930628.1473808-CDS-C-linearis_contig83:695699..696224Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 695700..696224 -
1690881167.1670396-CDS-C-linearis_contig83:695699..6962241690881167.1670396-CDS-C-linearis_contig83:695699..696224Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 695700..696224 -
1622930628.1697934-CDS-C-linearis_contig83:697240..6973361622930628.1697934-CDS-C-linearis_contig83:697240..697336Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 697241..697336 -
1690881167.1777446-CDS-C-linearis_contig83:697240..6973361690881167.1777446-CDS-C-linearis_contig83:697240..697336Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 697241..697336 -
1622930628.1911564-CDS-C-linearis_contig83:697769..6979191622930628.1911564-CDS-C-linearis_contig83:697769..697919Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 697770..697919 -
1690881167.1884694-CDS-C-linearis_contig83:697769..6979191690881167.1884694-CDS-C-linearis_contig83:697769..697919Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 697770..697919 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig83.16073.1

>prot_C-linearis_contig83.16073.1 ID=prot_C-linearis_contig83.16073.1|Name=mRNA_C-linearis_contig83.16073.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=257bp
MSYPTNNNTQWEPPEVETMVLPPRRRSIIREEDEDGNFEEKTAPLERWSQ
PSLCPCKNPSIMAYSLACCCCAMGDIGCYVRENWMCYPAYCLCASCPCCV
GDTRELVAEKYNLPISEWEPDDCGWCLVKFIGMRLMCVASVCLLPCFHVA
QMRAEVAFRRHGKPTVCPCCCCSCGGGEGPGVSSAKDEELDYPRNEDVKR
VVTKEEVLDYPRAGAKTYEDSPPEEEVEVVVDYPHAGARRYALDEYAPPV
PGDYPR*
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mRNA from alignment at C-linearis_contig83:694986..697967-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig83.16073.1 ID=mRNA_C-linearis_contig83.16073.1|Name=mRNA_C-linearis_contig83.16073.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2982bp|location=Sequence derived from alignment at C-linearis_contig83:694986..697967- (Chordaria linearis ClinC8C monoicous)
CCTCCCAGAGAGGTCACACGAGCTTTGCACCGGTGTGTACCGAGAGAGAT
GTCGTACCCAACCAACAACAACACACAATGGGAGCCACCGGAGGTAGAGA
CTATGGTTCTCCCGCCCAGGCGACGCTCGATCATTCGAGAAGAAGATGAA
GATGGCAACTTCGAAGAGAAAACCGCTCCGTTAGAACGTTGGTCGCAGGT
GAGGCCCCAGAGGCACACCAGCCCGCCGCCTGCGCAGGCTGATGCGTGGG
AGAGCCACATCCACGCAGCTAATGGGTGGACACGCAAGCAGCAGTCGTGG
CAGGGGCATGGTTATTGCAACTACGCCTGTTTGCTGTAGCGTCTCGCGAG
AGTGGAATGGACCAGTTCACCGCATGTTGTTCCTGCCTGTCCAGGGAGGC
TGCAAGAAAGCGGTTGCAGCATGCACCCCAACGCCCTAGAGGTGTGGAGG
ACCCCACCAATTGCTTGATATCGGTAAGATCTTTAGACAACGCATTGTCT
CGGAACAACTTCAGACCTTTGCAAGCTTTGCATTGGGCAAGATCTGAAAA
TATACTCTTGTTTCCATCCCTGTCCTTCCTTCCTGCCCCTGCCTGCATCT
CGCTGGTCTCCTCCTGCCCTTTTACATTCAGCCTTCTCTCTGCCCATGCA
AGAACCCGTCAATCATGGCCTATTCCTTGGCTTGCTGCTGCTGCGCTATG
GGCGATATCGGCTGCTATGTTCGTGAGGTGATTGCACCAACGATTACATT
TTTCAGCTGTCAGCTGGGTTGTTTTAATGACGGCCATCCCATGTGCATGA
GCTTCGAACGTTGATATGGCAGTACAGCAGCCAGCCACAGCAGCGGATCA
AGCCCCCAGTTGGGGATTGGAGTAGCTGATTGTGGTGCTTTATTTAGAGC
CCCAAGACCAACCTTGAAGTCCAAAAGGACCGTAGGCTTCTGTGTAGCTT
TTCCTGGTGCTGCCTGCTGCCATCGCTAGGCCGTGCAAGCGGATGACGCT
GTGCTTGGCTTGTCAGCTGATCTGGTGCCCAGCGAACTTTTTGGTCGGGC
AAATCTTTGAATCTTTGAATGGTTGTAAAATTATTATTTTTCTGCTTGAG
CATCAAAAGCTCGGCGTCCCCGGGCTCTGCTGATGAGTGCAATTGAGGCT
GGAATGGAATTCAAGCTTTTGTGGATTAGACCCTGTTCGTATGCCAAAAC
TCCTGTGCTAAGGGTCACATTACACTTCTTGCACGGAGTACTCTTTTTCG
AGCCCGCGCGGTGGCCCGGCGGGTTGATTTTTGAATACCCCAAAACTTGC
TGATTTTTACATGCATACATAGCACCGCCGTCTGTCTGGCATAGAGCCCT
GCGCTTGTATATCTCAGAACTGCTGTTGCAGGTGCCGTAAGAGCCGGTGT
CTACTTCATAGATTCGCTACGTATTGTGTAACAAGCTTGGTGCCATGGGC
CTTCTCTTGTTCAAGCCCAAAGCATGCATGGGTTTTTACTTTGTTTGTGG
TCCTGCTTGCCTGCCCACACTGCGTACACCTACCTAATGACGCTCGATTT
CTTCCAAGCAACCGTGTTTCGCGCACTCTATCTTCAAGAAAACTGCCGAA
GAATATTGAGCCCGACCAAGTAAAACCGCCCGTGTAGTTTTTTAAATCAA
AACGGCACCAAAGAAAGTAGTTTTGTTGAATACTCGTCTTTTCTTCCGCC
CGCCGCCCCGCGCCGCCGGCCCGCCTTGCCCCGGATGCCCCAGAACTGGA
TGTGCTACCCGGCGTACTGCCTGTGCGCGTCGTGCCCGTGCTGCGTGGGC
GACACCCGCGAACTGGTCGCGGAGAAGTACAACCTCCCCATCTCGGAGTG
GGAGCCCGACGACTGCGGCTGGTGCCTCGTCAAGTTCATCGGCATGAGAC
TCATGTGCGTCGCGAGCGTGTGCCTGCTGCCGTGCTTCCACGTCGCCCAG
ATGCGCGCGGAGGTGGCCTTCCGGAGACACGGGAAGCCGACGGTGTGCCC
ATGCTGCTGCTGCTCGTGCGGCGGCGGCGAGGGCCCCGGCGTCTCCTCCG
CCAAGGACGAAGAGCTCGACTACCCGCGAAACGAAGACGTAAAGCGCGTG
GTTACCAAGGAAGAGGTGCTCGACTACCCGAGAGCCGGCGCGAAGACGTA
CGAAGACTCGCCGCCCGAGGAGGAGGTCGAAGTTGTCGTGGACTATCCGC
ACGCGGGCGCCAGGCGGTACGCCTTGGACGAGTACGCCCCGCCCGTGCCG
GGGGACTACCCTCGTTGACCGGGCGGGCGGACGGGTGTATGAGCGCCAAG
GCTTGAGTACATAGCTAAAGTGTTCCGCGCTTTTCGTGGTCGTGGGATCA
CGTGTTGCGCATGCATGTGCGGTTTTACTGATCGCTACGTCGTGGAGGAG
ATGCATCCGTGATGGCTGGCGACGGATGGTGGCAAGACGTCTGTCGTTGA
TCGCAAGGGTTGGGGGAGTTTTTGGGTGACCGTGCTGCGGGGTTGGAATG
TTATTGTTGTATAGGTATTAATTAGAAAAAGCCCATTGGAAATTAACCGG
GCCAAGTATTTAGCTGCTCCATGGTGTCAACGCGCCCCAGATGGCTATCC
TGGAATACCTATTTGGCGCGTAAGCTTTGATCGTCTTGAGTTATTTTGTT
TTTAACCTCTATGGTACCGTTGCAACCGTTCTGTAAAAGTGTGCTTGATG
TGCGTTGTTTTTGTGGTCGTGCCGATGTGGTGGGGGTGCCTGCGGTATGG
CTTTCCCAACTATTTTCCTCGCGAGAATAGCTTGGTACGGAGTCCGGCCC
ACCGCGCAAGTAACAAGCCTTGGGTGGGATTCCTGCCCTTTTCGTGTTGT
TTGAAATCTCATTTCCGGCGGGCGCACCCCTGGGGTGCGAACATAACCAT
CCGTACGAAGGATTAGGAGAAACCTTCCTTTGGAATGGAGGGACTGTAAC
ATCAGATATAAAATTCGAATCATATTGATGAG
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Coding sequence (CDS) from alignment at C-linearis_contig83:694986..697967-

>mRNA_C-linearis_contig83.16073.1 ID=mRNA_C-linearis_contig83.16073.1|Name=mRNA_C-linearis_contig83.16073.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1542bp|location=Sequence derived from alignment at C-linearis_contig83:694986..697967- (Chordaria linearis ClinC8C monoicous)
ATGTCGTACCCAACCAACAACAACACACAATGGGAGCCACCGGAGGTAGA
GACTATGGTTCTCCCGCCCAGGCGACGCTCGATCATTCGAGAAGAAGATG
AAGATGGCAACTTCGAAGAGAAAACCGCTCCGTTAGAACGTTGGTCGCAG
ATGTCGTACCCAACCAACAACAACACACAATGGGAGCCACCGGAGGTAGA
GACTATGGTTCTCCCGCCCAGGCGACGCTCGATCATTCGAGAAGAAGATG
AAGATGGCAACTTCGAAGAGAAAACCGCTCCGTTAGAACGTTGGTCGCAG
CCTTCTCTCTGCCCATGCAAGAACCCGTCAATCATGGCCTATTCCTTGGC
TTGCTGCTGCTGCGCTATGGGCGATATCGGCTGCTATGTTCGTGAGCCTT
CTCTCTGCCCATGCAAGAACCCGTCAATCATGGCCTATTCCTTGGCTTGC
TGCTGCTGCGCTATGGGCGATATCGGCTGCTATGTTCGTGAGAACTGGAT
GTGCTACCCGGCGTACTGCCTGTGCGCGTCGTGCCCGTGCTGCGTGGGCG
ACACCCGCGAACTGGTCGCGGAGAAGTACAACCTCCCCATCTCGGAGTGG
GAGCCCGACGACTGCGGCTGGTGCCTCGTCAAGTTCATCGGCATGAGACT
CATGTGCGTCGCGAGCGTGTGCCTGCTGCCGTGCTTCCACGTCGCCCAGA
TGCGCGCGGAGGTGGCCTTCCGGAGACACGGGAAGCCGACGGTGTGCCCA
TGCTGCTGCTGCTCGTGCGGCGGCGGCGAGGGCCCCGGCGTCTCCTCCGC
CAAGGACGAAGAGCTCGACTACCCGCGAAACGAAGACGTAAAGCGCGTGG
TTACCAAGGAAGAGGTGCTCGACTACCCGAGAGCCGGCGCGAAGACGTAC
GAAGACTCGCCGCCCGAGGAGGAGGTCGAAGTTGTCGTGGACTATCCGCA
CGCGGGCGCCAGGCGGTACGCCTTGGACGAGTACGCCCCGCCCGTGCCGG
GGGACTACCCTCGTTGAAACTGGATGTGCTACCCGGCGTACTGCCTGTGC
GCGTCGTGCCCGTGCTGCGTGGGCGACACCCGCGAACTGGTCGCGGAGAA
GTACAACCTCCCCATCTCGGAGTGGGAGCCCGACGACTGCGGCTGGTGCC
TCGTCAAGTTCATCGGCATGAGACTCATGTGCGTCGCGAGCGTGTGCCTG
CTGCCGTGCTTCCACGTCGCCCAGATGCGCGCGGAGGTGGCCTTCCGGAG
ACACGGGAAGCCGACGGTGTGCCCATGCTGCTGCTGCTCGTGCGGCGGCG
GCGAGGGCCCCGGCGTCTCCTCCGCCAAGGACGAAGAGCTCGACTACCCG
CGAAACGAAGACGTAAAGCGCGTGGTTACCAAGGAAGAGGTGCTCGACTA
CCCGAGAGCCGGCGCGAAGACGTACGAAGACTCGCCGCCCGAGGAGGAGG
TCGAAGTTGTCGTGGACTATCCGCACGCGGGCGCCAGGCGGTACGCCTTG
GACGAGTACGCCCCGCCCGTGCCGGGGGACTACCCTCGTTGA
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