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Homology
BLAST of mRNA_C-linearis_contig83.16057.1 vs. uniprot
Match: A0A6H5KLR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR4_9PHAE) HSP 1 Score: 220 bits (561), Expect = 1.240e-61 Identity = 120/234 (51.28%), Postives = 151/234 (64.53%), Query Frame = 3
Query: 966 REMYAQMSEAGIKNLPDGGVVVGLVDQEIRKHWLGRNEYLGGVCVDLLRVKAVEAAVRKWWDFLLELLRKNSTQPSTSDRQVEYEKARRLERLKRQHFFSREETICARAVEQGVDRRRVAHPLMSIFCAIDQVEDKILVQRLGDAHLVKVAYPSRPVDLDVHQERLVFNVGGWLLSSALSRVKRQPSLGPDFLPFINSHNKHDSGAEFRRAHPELRNLELVVEERNIRFDGSYL 1667
R+ YA M+E +K LP G ++ V + +R HW+G+ + V LL V+ V+ A+ WW L+ L +NS +P +S R + YEK R ER +Q FS E +I +A+E GVD RRVAH L +F AID+V DK L Q+ AHLVKVAYP+ VDLDVHQ RLV+N+ GWLLSSALSRV RQ SLG FLPF NSH K S EFR A+P LE VVEERN ++G L
Sbjct: 5 RQTYAAMAEIVVKQLPTGARLIDWVGERLRVHWMGQVPEYKHIVVGLLDVQEVKDAILGWWGVLVGALVENSKKPPSSKRALAYEKKREEERFPKQEEFSSEPSIVRKALELGVDSRRVAHKLTCVFGAIDEVADKTLTQQTDAAHLVKVAYPAEDVDLDVHQRRLVYNIAGWLLSSALSRVSRQRSLGSAFLPFFNSH-KVASAEEFREAYPHFSGLEFVVEERNNPWEGKGL 237
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Exons | 7 |
| Model size | 2553 |
| Cds size | 1098 |
| Stop | 1 |
| Hectar predicted targeting category | mitochondrion |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930624.156811-UTR-C-linearis_contig83:462374..463221 | 1622930624.156811-UTR-C-linearis_contig83:462374..463221 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig83 462375..463221 - |
| 1690881165.2172601-UTR-C-linearis_contig83:462374..463221 | 1690881165.2172601-UTR-C-linearis_contig83:462374..463221 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig83 462375..463221 - |
| 1622930624.2761524-UTR-C-linearis_contig83:465267..465330 | 1622930624.2761524-UTR-C-linearis_contig83:465267..465330 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig83 465268..465330 - |
| 1690881165.297422-UTR-C-linearis_contig83:465267..465330 | 1690881165.297422-UTR-C-linearis_contig83:465267..465330 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig83 465268..465330 - |
| 1622930624.2948756-UTR-C-linearis_contig83:466343..466613 | 1622930624.2948756-UTR-C-linearis_contig83:466343..466613 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig83 466344..466613 - |
| 1690881165.3085957-UTR-C-linearis_contig83:466343..466613 | 1690881165.3085957-UTR-C-linearis_contig83:466343..466613 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig83 466344..466613 - |
| 1622930624.3155365-UTR-C-linearis_contig83:466677..466952 | 1622930624.3155365-UTR-C-linearis_contig83:466677..466952 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig83 466678..466952 - |
| 1690881165.3180802-UTR-C-linearis_contig83:466677..466952 | 1690881165.3180802-UTR-C-linearis_contig83:466677..466952 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig83 466678..466952 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930624.175017-CDS-C-linearis_contig83:463221..463566 | 1622930624.175017-CDS-C-linearis_contig83:463221..463566 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig83 463222..463566 - |
| 1690881165.228814-CDS-C-linearis_contig83:463221..463566 | 1690881165.228814-CDS-C-linearis_contig83:463221..463566 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig83 463222..463566 - |
| 1622930624.2004783-CDS-C-linearis_contig83:463727..464117 | 1622930624.2004783-CDS-C-linearis_contig83:463727..464117 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig83 463728..464117 - |
| 1690881165.2401035-CDS-C-linearis_contig83:463727..464117 | 1690881165.2401035-CDS-C-linearis_contig83:463727..464117 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig83 463728..464117 - |
| 1622930624.2175748-CDS-C-linearis_contig83:464353..464557 | 1622930624.2175748-CDS-C-linearis_contig83:464353..464557 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig83 464354..464557 - |
| 1690881165.255274-CDS-C-linearis_contig83:464353..464557 | 1690881165.255274-CDS-C-linearis_contig83:464353..464557 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig83 464354..464557 - |
| 1622930624.2368557-CDS-C-linearis_contig83:464966..465054 | 1622930624.2368557-CDS-C-linearis_contig83:464966..465054 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig83 464967..465054 - |
| 1690881165.270792-CDS-C-linearis_contig83:464966..465054 | 1690881165.270792-CDS-C-linearis_contig83:464966..465054 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig83 464967..465054 - |
| 1622930624.2553015-CDS-C-linearis_contig83:465196..465267 | 1622930624.2553015-CDS-C-linearis_contig83:465196..465267 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig83 465197..465267 - |
| 1690881165.2815316-CDS-C-linearis_contig83:465196..465267 | 1690881165.2815316-CDS-C-linearis_contig83:465196..465267 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig83 465197..465267 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig83.16057.1 >prot_C-linearis_contig83.16057.1 ID=prot_C-linearis_contig83.16057.1|Name=mRNA_C-linearis_contig83.16057.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=366bp
MVLANMAIKCRCLAFVHSQSPTERKELREGEKRRKTTAAARRKMKRNSKA
SAEMGRRMRPGPGVCLLTTKKTKTSTSWSVTYRRIRREEEKIAGRQQQKT
ARIRPKRVRRESRNLPAATREMYAQMSEAGIKNLPDGGVVVGLVDQEIRK
HWLGRNEYLGGVCVDLLRVKAVEAAVRKWWDFLLELLRKNSTQPSTSDRQ
VEYEKARRLERLKRQHFFSREETICARAVEQGVDRRRVAHPLMSIFCAID
QVEDKILVQRLGDAHLVKVAYPSRPVDLDVHQERLVFNVGGWLLSSALSR
VKRQPSLGPDFLPFINSHNKHDSGAEFRRAHPELRNLELVVEERNIRFDG
SYLSVGGVFSFRACA* back to topmRNA from alignment at C-linearis_contig83:462375..466952- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig83.16057.1 ID=mRNA_C-linearis_contig83.16057.1|Name=mRNA_C-linearis_contig83.16057.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4578bp|location=Sequence derived from alignment at C-linearis_contig83:462375..466952- (Chordaria linearis ClinC8C monoicous)
TCGGCGCGGTTCATGCAGGGAGATCTGTCAATCATGGCCGGCAGTCGCCT
TTGCACAGGCAGGTGGGCGCAGGAAGGGAAGTGGGGAACAGTCCTGAAAA
CGAATGTAGATAAGGCTTATCTGCTCCACCACCTTTAGCGTCACTGAGCC
CCCGTGGGTGGGCGTTTGTCTGCAACGACGCATCGCCTCGGGGTCCCCGG
CGGCTTGTACGAGCTGTGGGCCGTGTCCATACCACACATTCAAATCTGGG
CCGCATTCAGCTGTTTGACGGGTGTTGTGGCGGGAATAACGTGATGCCCT
CCCCCTGAGATGCTGCTGAACCCCCTGGTGCGACCATATCTCGGCACAAA
GAATATGACTCTTAATATACCATAGGCACCTCACTCTGATTTTTTCCTAT
GGAAAAGCAGTTCGCAAGGCTCGGGGGGGGGTCGCGGATAATATACAAAA
AAAACACGCTTCGAGAAAGCATCGAAACCCTAGGGATGCGGCCCCCAAAG
GCGGACTGCACAGCGTTGGGAGAGAGATTCAATCATCGTCACGGTACACC
GACGTCGCTTCATAGGCTTGCCGACTTCGTGCAACAGGAACGGGCTCAAT
CGGTAGCAGGTGCGTGGAGAAAACCTGATTTTTTTTTGCGGGGCTTTAAA
CCATCACCAGCGACTTGCTGTAACCCACGGCCGCCGCTCTCGACTACCAA
AGCTTACCGTATGCAACAGGTGGTACCAGTGCATACTCGAACGTGTGTTC
TCTGACCCGTCCAAATTTCGCGGCAAGCGATGATCGTTCCTTTTCGCACG
GGGGAAAAAACAATCAGATTCTGGTGCCACATTAGAGGTCTTGCCTCCGC
ATGCCATCCAACAGCGGCATGCCGCGAAGCCCTTTCTTGGCGGTCGCGGC
AAGTTGGGGTGAGGAAATTCCAACCAATCCCTAGGCAACTGTCTCCCCTC
TGATGTCGCAAAGTTTCGCGGCTATAATTGATCAGTTCGCTTCGTGCTGG
TGAACGAAGTTGCTTTTGTAGTTCAAAAACCGAGTCGCGGTCGGACGCCA
CGCCGCAGCCTCAACAGGTGGCCTTGCCTTTGTCGTAGGGTCACAGAGCA
ACAGGGGCATGAGTAGTGGCGAAGAACGGTGGCTGCGTTCGCGCTTTCAA
GTCGGGGGGAGCCGTTAGACGCATGTTGTTCTCGTTTGGCAGTTAAAGGA
AGAGACAATGTTGGTGTCCCCTGGCCTCGTAGGCAGAGTTCTGAAGATGC
CGCGGGGAGAGAGGCGGTAGTGTGTATTGAAGACATACAGCAGTACGTAG
CATGCTTTGAGCTAGAGCGAGATTTTGGGTTACCATTGTTGCGTGTCATG
TCCGTGTTCCTTACGAGGCGAAATTGAGCCTCGAAATAGGCTTCACGGCG
TCAAAAAGTGCTTCAATGTACATCACGGTGACAAGGTCCGGAGGCGTGCT
TCCGCCACACCCCACAAGCTTTCGTCTTTCGGTTTTCCGCGCAACTACTC
ACTGTTTGTATAATGTAGATACGGCGTGCTAACGCAGTTCGGTTCTGCTG
TTAGCGCAAACATGAGAAACTTGTAATTTTCTCTGTCGTTCTCGCCGTGC
TCGCCCGAAACATGTGCAACAGCTCGGGTGCTCTAACTGGGAGTTGTGGC
TGGACTACGCGAGGCCACGGCAGGGGGTGGCTGGGATGGTGCTGGCGAAT
ATGGCGATCAAGTGTCGCTGTCTCGCTTTCGTGCACTCTCAATCTCCGAC
GGAGAGGTAATCACCTAACACTTGTTGGGGTGAAATTGTTGAAAGTAAGA
TCCGCTGGGCTCTCGACGTACGACTAGGGGCGTACGTATGGTCTTCGTGT
AGAACTACATTATAATTATTTTCGCGTGTTGTTTATACCTTCGCGCAGGA
AAGAGCTACGGGAGGGAGAGAAGAGAAGAAAGACTACGGCGGCAGCCCGC
AGGAAGATGAAGCGAAATTCGAAGGCGTCCGCGGAGGTGACGTGAATACG
ACCTGGCGAGACATGCTCATCTGTCCATCTCTCAATACCTGACGTCCCCA
TTGTTGATCGGAATCCTTCCTCCATTGTTATGGTGTTTTAGACGGTGGGT
TCGTCGCCGGGCGCGCTTTTTTTCATGGAAAGGGTAATCGTGGCCCTCGG
ATTTCTACACAGAAGCGTGTCCAACATTTTTCTTCAGGACTTTTGTTCCG
CCAATAGCATAGGCATTTTGCCACCGTCATCTCGCGCTGCCACCACCACA
TCTCAATTTTGGGATCATCACCAGCAACTCGCATGGTCGCGCGAGTTTCG
CCTTTTCCCAGGTGCCTTTCACGAAATTACAGCGTTCAGAGTGGTGTCCT
TCGAAATGCATGGTGCCTGTTAACGTCGTGGTGTGTTTCGCGCAGATGGG
GAGGAGGATGCGGCCTGGACCAGGGGTTTGCCTCTTGACGACGAAGAAAA
CGAAAACCTCGACGAGCTGGAGCGTTACCTACAGGCGGATACGGAGGGAA
GAAGAGAAAATAGCTGGGAGGCAACAGCAGAAGACGGCGAGGATAAGGCC
GAAGAGAGTAAGGCGGGAGAGTCGGAACCTTCCTGCCGCCACCCGAGAGG
TGAGAATCAGGAAACGCGACGGTTAGAGTTACAGCGAGCCCAATTCTTGT
TGTCTCGGGTTATTTGTGGTAGGCACTGTAACGTAATGTATTCATTTTTA
TGCGAGCAGCACGGACCATCCTTCCGAGATGGCGACGGTTTTGTACGCCA
AGACTGTTCTCAACATCGTCATCGTCGTACGGTCGGTTTCGCGCATTTTG
TCTTCGTGCCCTTGCTACTGTTCCTTGCACTTAAGATGTACGCCCAGATG
TCCGAAGCGGGTATCAAGAATCTCCCGGACGGCGGGGTGGTGGTGGGGTT
GGTTGACCAGGAGATACGCAAACATTGGCTGGGACGAAACGAGTACCTGG
GCGGTGTTTGTGTAGACTTGCTCAGGGTCAAGGCTGTAGAGGCTGCGGTG
CGAAAGTGGTGGGACTTTCTCTTAGAATTACTGAGGAAGAATTCGACACA
GCCGTCTACGTCGGATCGTCAGGTAGAGTACGAAAAGGCGCGGAGGTTAG
AGCGTCTAAAAAGGCAACATTTCTTCAGCCGCGAGGAGACAATCTGTGCC
AGGGCGGTGGAGCAGGGAGTGGATAGGCGGCGTGTCGCTCATCCTCTCAT
GTCCATCTTCTGCGCTATCGATCAGGTCAGTCAGTACGTATGGCGCGGTA
GGAGACCGTGAAGGGATGGTGAATGCGTCTGTGTATTTGACGAAATGAAG
GTATGATTCCATGTCGGAGTGTCGCTCTATAAAGTTCTTTCTCCGTCATG
TGCCCTGTGTTGCGCATTTTTTGGGATTCCAAACAGGTCGAAGACAAGAT
CCTCGTCCAACGCTTGGGCGACGCCCATCTCGTCAAAGTGGCGTATCCTA
GTCGGCCCGTGGACCTGGACGTTCATCAGGAGCGCCTTGTGTTCAATGTT
GGAGGGTGGCTTTTGAGTTCCGCTCTTTCACGCGTTAAGAGACAGCCTTC
TCTTGGCCCGGACTTTCTCCCATTTATCAACAGCCACAACAAGCATGACT
CAGGAGCGGAATTCCGAAGAGCGCACCCTGAGTTGAGGAATCTAGAGCTT
GTGGTCGAGGAGAGGAACATTCGGTTTGATGGGTCTTATCTTTCCGTCGG
CGGAGTTTTTTCGTTTCGTGCGTGCGCTTGAGGTTGGGTATAGAGAGGCG
ATGCTGAACCCCGCCCTGCTGGCGACGTATCTGGGGGATTTTCCGGCGGA
AGTGAAGAGAGTCGTGTCCACGGCGGGCCCCGTGAAGGAGGCATGGGCAA
ATTGTGTGCGTGAGGTGATGGATCCTAACCTAGGGCCGGCTGGGGGGAAG
GGCCACAAAAAGCAATGTGACGAGCTATTCGCGTTGGTGGTCACTAAGTT
TCACAATTGCCGCGTCTTCGCTTGGACGAAAGAGTTGACACAGAGTTGAA
GAAATCGATGAAGAAGCGAAGGGCAGAGATGGCGCTGAGGGATAAGTTGA
AGGCGGGAGTTGGCGGTAGTGGTGGGCGTCGCGCGCCGAAAACAAAAAAG
TCGGAGCCGAAGGTATACACCCCCGAGCAGAGAATATGGCAGAATAACCT
GAACCAGTTCTGCGGCCCCGAGTCATGGGATAAGATGACCATGAAAGACC
TCCGAGGGTGGATCACAGACTGCGGCGGCACGGCCAAAACGAGTTTGAAC
AAACACGAGCTTCGCCAGATGTTGAGGAGTTTCGCACCTCGCGCTGGAAT
CGCGGAAGACATGAGCTTTGAACTTCTCCGACCAACTTCTAATCCACCGC
TAAACTGGACCGGATTAGTTACGTAGTATGGGGGTTGGCAGCCACGTACT
TGTGTCGTCGTAGAGTTTTGTCCGCGGTACACTGGAGATGTGGGTCGGCC
CCGCCCCCAGACGTAAAACATGGAATGGTGGTCACCAGCGCGGCTTGGGA
GTGTGCCAGTAAGTAAGATAACGTTAAACGTTCGATTACATCCGACGACT
GGATTTCAATCCGACGACAGAAACTCTA back to topCoding sequence (CDS) from alignment at C-linearis_contig83:462375..466952- >mRNA_C-linearis_contig83.16057.1 ID=mRNA_C-linearis_contig83.16057.1|Name=mRNA_C-linearis_contig83.16057.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2196bp|location=Sequence derived from alignment at C-linearis_contig83:462375..466952- (Chordaria linearis ClinC8C monoicous)
ATGGTGCTGGCGAATATGGCGATCAAGTGTCGCTGTCTCGCTTTCGTGCA
CTCTCAATCTCCGACGGAGAGATGGTGCTGGCGAATATGGCGATCAAGTG
TCGCTGTCTCGCTTTCGTGCACTCTCAATCTCCGACGGAGAGGAAAGAGC
TACGGGAGGGAGAGAAGAGAAGAAAGACTACGGCGGCAGCCCGCAGGAAG
ATGAAGCGAAATTCGAAGGCGTCCGCGGAGGAAAGAGCTACGGGAGGGAG
AGAAGAGAAGAAAGACTACGGCGGCAGCCCGCAGGAAGATGAAGCGAAAT
TCGAAGGCGTCCGCGGAGATGGGGAGGAGGATGCGGCCTGGACCAGGGGT
TTGCCTCTTGACGACGAAGAAAACGAAAACCTCGACGAGCTGGAGCGTTA
CCTACAGGCGGATACGGAGGGAAGAAGAGAAAATAGCTGGGAGGCAACAG
CAGAAGACGGCGAGGATAAGGCCGAAGAGAGTAAGGCGGGAGAGTCGGAA
CCTTCCTGCCGCCACCCGAGAGATGGGGAGGAGGATGCGGCCTGGACCAG
GGGTTTGCCTCTTGACGACGAAGAAAACGAAAACCTCGACGAGCTGGAGC
GTTACCTACAGGCGGATACGGAGGGAAGAAGAGAAAATAGCTGGGAGGCA
ACAGCAGAAGACGGCGAGGATAAGGCCGAAGAGAGTAAGGCGGGAGAGTC
GGAACCTTCCTGCCGCCACCCGAGAGATGTACGCCCAGATGTCCGAAGCG
GGTATCAAGAATCTCCCGGACGGCGGGGTGGTGGTGGGGTTGGTTGACCA
GGAGATACGCAAACATTGGCTGGGACGAAACGAGTACCTGGGCGGTGTTT
GTGTAGACTTGCTCAGGGTCAAGGCTGTAGAGGCTGCGGTGCGAAAGTGG
TGGGACTTTCTCTTAGAATTACTGAGGAAGAATTCGACACAGCCGTCTAC
GTCGGATCGTCAGGTAGAGTACGAAAAGGCGCGGAGGTTAGAGCGTCTAA
AAAGGCAACATTTCTTCAGCCGCGAGGAGACAATCTGTGCCAGGGCGGTG
GAGCAGGGAGTGGATAGGCGGCGTGTCGCTCATCCTCTCATGTCCATCTT
CTGCGCTATCGATCAGATGTACGCCCAGATGTCCGAAGCGGGTATCAAGA
ATCTCCCGGACGGCGGGGTGGTGGTGGGGTTGGTTGACCAGGAGATACGC
AAACATTGGCTGGGACGAAACGAGTACCTGGGCGGTGTTTGTGTAGACTT
GCTCAGGGTCAAGGCTGTAGAGGCTGCGGTGCGAAAGTGGTGGGACTTTC
TCTTAGAATTACTGAGGAAGAATTCGACACAGCCGTCTACGTCGGATCGT
CAGGTAGAGTACGAAAAGGCGCGGAGGTTAGAGCGTCTAAAAAGGCAACA
TTTCTTCAGCCGCGAGGAGACAATCTGTGCCAGGGCGGTGGAGCAGGGAG
TGGATAGGCGGCGTGTCGCTCATCCTCTCATGTCCATCTTCTGCGCTATC
GATCAGGTCGAAGACAAGATCCTCGTCCAACGCTTGGGCGACGCCCATCT
CGTCAAAGTGGCGTATCCTAGTCGGCCCGTGGACCTGGACGTTCATCAGG
AGCGCCTTGTGTTCAATGTTGGAGGGTGGCTTTTGAGTTCCGCTCTTTCA
CGCGTTAAGAGACAGCCTTCTCTTGGCCCGGACTTTCTCCCATTTATCAA
CAGCCACAACAAGCATGACTCAGGAGCGGAATTCCGAAGAGCGCACCCTG
AGTTGAGGAATCTAGAGCTTGTGGTCGAGGAGAGGAACATTCGGTTTGAT
GGGTCTTATCTTTCCGTCGGCGGAGTTTTTTCGTTTCGTGCGTGCGCTTG
AGTCGAAGACAAGATCCTCGTCCAACGCTTGGGCGACGCCCATCTCGTCA
AAGTGGCGTATCCTAGTCGGCCCGTGGACCTGGACGTTCATCAGGAGCGC
CTTGTGTTCAATGTTGGAGGGTGGCTTTTGAGTTCCGCTCTTTCACGCGT
TAAGAGACAGCCTTCTCTTGGCCCGGACTTTCTCCCATTTATCAACAGCC
ACAACAAGCATGACTCAGGAGCGGAATTCCGAAGAGCGCACCCTGAGTTG
AGGAATCTAGAGCTTGTGGTCGAGGAGAGGAACATTCGGTTTGATGGGTC
TTATCTTTCCGTCGGCGGAGTTTTTTCGTTTCGTGCGTGCGCTTGA back to top
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