mRNA_C-linearis_contig83.16052.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig83.16052.1
Unique NamemRNA_C-linearis_contig83.16052.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig83.16052.1 vs. uniprot
Match: A0A6H5KUC4_9PHAE (Apt1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUC4_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 1.760e-11
Identity = 92/181 (50.83%), Postives = 99/181 (54.70%), Query Frame = -2 
Query:   66 ARRMGWKGFSSPLPRRAGASPLGRTALE-DDSDDGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAKLGEA-----ATAAVADHLAEGTAM--------------------RSKADEHDAKLLLFGRQLGGAXXXXXXXXRESHPSG----GKSSRLSKGIKRLAFPGKKGAG 518
            +R +GWKGF SPLPRRAGAS LGR ALE DD      XXXXXXXXXX               XXXXXXXXXX   L E       TA +    A G+                      RS+ADEHDAKLLLFGRQLGG+  XXXXXX           G+SSRL   IKRLAF GKKGAG
Sbjct: 1421 SRWVGWKGFVSPLPRRAGASLLGRMALEADDXXXXXXXXXXXXXXXXNRAHDDVSPITIGPAXXXXXXXXXXXXALREPRSTGRGTATMTASFAPGSGXXXXLXXXXXXXXXXXXXXDARSQADEHDAKLLLFGRQLGGSRSXXXXXXXXXXXXXXXXXGRSSRLPSRIKRLAFSGKKGAG 1601
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUC4_9PHAE1.760e-1150.83Apt1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:353177..353703 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size528
Cds size525
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930620.4672391-CDS-C-linearis_contig83:353176..3537011622930620.4672391-CDS-C-linearis_contig83:353176..353701Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 353177..353701 +
1690881163.4285238-CDS-C-linearis_contig83:353176..3537011690881163.4285238-CDS-C-linearis_contig83:353176..353701Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 353177..353701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16052.1prot_C-linearis_contig83.16052.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig83 353177..353701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig83.16052.1

>prot_C-linearis_contig83.16052.1 ID=prot_C-linearis_contig83.16052.1|Name=mRNA_C-linearis_contig83.16052.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=175bp
SPAAPPLLPSPPPAPLPPPLPPPAPFLPGNASLLMPFERREDFPPDGWLS
LPPPPPPPLAPPSCRPNKRSLASCSSAFERIAVPSARWSATAAVAASPSF
ASAAAAAAAAAGPIVIGDSFSSSSPLVWLPLPPLASSLLPSSLSSSRAVR
PSGEAPARRGRGDEKPFHPIRRASA
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mRNA from alignment at C-linearis_contig83:353177..353703+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig83.16052.1 ID=mRNA_C-linearis_contig83.16052.1|Name=mRNA_C-linearis_contig83.16052.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=527bp|location=Sequence derived from alignment at C-linearis_contig83:353177..353703+ (Chordaria linearis ClinC8C monoicous)
TCCCCCGCGGCACCACCACTGCTCCCATCGCCCCCCCCTGCGCCGCTTCC
TCCTCCTCTTCCTCCTCCTGCCCCCTTCTTGCCGGGAAACGCCAGTCTCT
TGATGCCCTTCGAAAGGCGCGAGGACTTCCCACCGGATGGATGGCTTTCT
CTCCCCCCGCCGCCGCCGCCGCCGCTGGCGCCGCCCAGCTGCCGGCCGAA
TAAGAGGAGCTTGGCATCGTGTTCGTCGGCTTTCGAGCGCATCGCGGTAC
CCTCCGCGAGATGGTCCGCCACTGCCGCTGTCGCTGCCTCCCCCAGCTTC
GCGTCCGCCGCGGCTGCCGCGGCTGCAGCGGCAGGGCCGATAGTGATCGG
AGACTCGTTCTCGTCTTCTTCGCCGTTGGTGTGGTTGCCGTTGCCACCGC
TGGCGTCGTCACTGCTGCCGTCATCGCTGTCGTCCTCGAGAGCCGTCCGC
CCCAGCGGCGAAGCACCGGCACGGCGCGGGAGAGGCGACGAGAAGCCCTT
CCACCCCATCCGCCGCGCGTCCGCCCC
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Coding sequence (CDS) from alignment at C-linearis_contig83:353177..353703+

>mRNA_C-linearis_contig83.16052.1 ID=mRNA_C-linearis_contig83.16052.1|Name=mRNA_C-linearis_contig83.16052.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at C-linearis_contig83:353177..353703+ (Chordaria linearis ClinC8C monoicous)
TCCCCCGCGGCACCACCACTGCTCCCATCGCCCCCCCCTGCGCCGCTTCC
TCCTCCTCTTCCTCCTCCTGCCCCCTTCTTGCCGGGAAACGCCAGTCTCT
TGATGCCCTTCGAAAGGCGCGAGGACTTCCCACCGGATGGATGGCTTTCT
CTCCCCCCGCCGCCGCCGCCGCCGCTGGCGCCGCCCAGCTGCCGGCCGAA
TAAGAGGAGCTTGGCATCGTGTTCGTCGGCTTTCGAGCGCATCGCGGTAC
CCTCCGCGAGATGGTCCGCCACTGCCGCTGTCGCTGCCTCCCCCAGCTTC
GCGTCCGCCGCGGCTGCCGCGGCTGCAGCGGCAGGGCCGATAGTGATCGG
AGACTCGTTCTCGTCTTCTTCGCCGTTGGTGTGGTTGCCGTTGCCACCGC
TGGCGTCGTCACTGCTGCCGTCATCGCTGTCGTCCTCGAGAGCCGTCCGC
CCCAGCGGCGAAGCACCGGCACGGCGCGGGAGAGGCGACGAGAAGCCCTT
CCACCCCATCCGCCGCGCGTCCGCCTCCCCCGCGGCACCACCACTGCTCC
CATCGCCCCCCCCTGCGCCGCTTCCTCCTCCTCTTCCTCCTCCTGCCCCC
TTCTTGCCGGGAAACGCCAGTCTCTTGATGCCCTTCGAAAGGCGCGAGGA
CTTCCCACCGGATGGATGGCTTTCTCTCCCCCCGCCGCCGCCGCCGCCGC
TGGCGCCGCCCAGCTGCCGGCCGAATAAGAGGAGCTTGGCATCGTGTTCG
TCGGCTTTCGAGCGCATCGCGGTACCCTCCGCGAGATGGTCCGCCACTGC
CGCTGTCGCTGCCTCCCCCAGCTTCGCGTCCGCCGCGGCTGCCGCGGCTG
CAGCGGCAGGGCCGATAGTGATCGGAGACTCGTTCTCGTCTTCTTCGCCG
TTGGTGTGGTTGCCGTTGCCACCGCTGGCGTCGTCACTGCTGCCGTCATC
GCTGTCGTCCTCGAGAGCCGTCCGCCCCAGCGGCGAAGCACCGGCACGGC
GCGGGAGAGGCGACGAGAAGCCCTTCCACCCCATCCGCCGCGCGTCCGCC
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