mRNA_C-linearis_contig83.16042.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig83.16042.1
Unique NamemRNA_C-linearis_contig83.16042.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig83.16042.1 vs. uniprot
Match: D7G7M3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M3_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 4.460e-43
Identity = 221/548 (40.33%), Postives = 272/548 (49.64%), Query Frame = 2 
Query:  374 GLVYAFLTLLAEGISSCCNLRDALGRTALHEAAEQGDIDVAKILLNAGARVDPRCQRMVTPLMLAARGGHGDVVRLLLREGAGGADRQDDECSR--VEWRSTALHHXXXXXXXXXXXXXXDAGFYRDQHDEAGLTPAEISARAGHASSLTATRRLLGGAGGGDRGGKLVHNYVNMVAEDVDIVRGLVDGGAFLDWQDETGGETALHRAAHFQHSHVHEVLIGAGADVNLR-NVRGGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEHRDLERGQTPLSEASEYALAPIIRLLVEAGADVESRSTAGLTALHWACRFNSPDSVAVLLAAGADPGAAEQAAGAAAGTVGTTSLLPQPPIGARKKLKAEDVIGFGDPISRRAEDPRRP--FMGELRAAAERRLDPVARSRIAHLLRDARKDRAWRRRGWLVVLVKRRDDDARASLCGKIPRVPGVVESDSLGFSNGVKGINVNVPRDRKAARVGAQVQADVFRK-----SQRFGGGGNRASTGHVPSKNSLE 1987
            GL +    LLAEG    C+ +D  G+T LH AA QG +D+  +L++AGA V                               G  +R + E  R   E RST    XXXXXXXXXXXXXX AGF + QHDE  +T AEISAR GH SS  ATRRLLGG    DRGGKLV++YVNMV++DV  V GLV GGAFLDWQD     T LHRA +F H  + ++L+ AGA+ N+  N+     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                S E RD   G TPL+ AS+ +   ++R+L+  GADV SRS A                            +A+   GA AG+                       IG GDP   R   P+ P   +G +        + +A +RI   L  ARKDR WRRRGWLVVL +R     +A     +P            F  G K     +   R  A  G  V AD  R+      Q     GN +S+  +P  N ++
Sbjct:   68 GLTFTVQALLAEG-RIACDAKDRFGKTPLHWAAGQGHVDIVLVLMDAGALVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPNRHNCEEGRCHAELRSTXXXXXXXXXXXXXXXXXXXAGFCKGQHDETRVTAAEISARVGHESSREATRRLLGG----DRGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADNLAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRIGVTRLLLDASASSLEVRDSYHGITPLAWASKLSFTLMLRVLLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXDSADNE-GADAGS----------------------AIGLGDPP--RHAGPQSPPILLGAVNEIGRLNNEELA-TRIRLALSKARKDRTWRRRGWLVVLARR-----QAMAMAVVPGTTSRASKAYYAFVRGNKKSESRMTTPRILATTG--VDADTGRRVYLAIHQEGTRQGNGSSSSDLPHGNEVD 577
[Close]
BLAST of mRNA_C-linearis_contig83.16042.1 vs. uniprot
Match: A0A6H5L5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T2_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 2.480e-42
Identity = 207/631 (32.81%), Postives = 274/631 (43.42%), Query Frame = 2 
Query:  374 GLVYAFLTLLAEGISSCCNLRDALGRTALHEAAEQGDIDVAKILLNAGARVDPRCQRMVTPLMLAARGGHGDVVRLLLREGAGGADRQDDE--CSRVEWRSTALHHXXXXXXXXXXXXXXDAGFYRDQHDEAGLTPAEISARAGHASSLTATRRLLGGAGGGDRGGKLVHNYVNMVAEDVDIVRGLVDGGAFLDWQDETGGETALHRAAHFQHSHVHEVLIGAGADVNLRNVRGGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTEHRDLERGQTPLSEASEYALAPIIRLLVEAGADVESRSTAGLTALHWACRFNSPDSVAVLLAAGADPGAAEQAAGAAAGTVGTTSLLPQPPIGARKKLKAEDVIGFGDPISRRAEDPRRP--FMGELRAAAERRLDPVARSRIAHLLRDARKDRAWRRRGWLVVLVKRRDDDARASLCGKIPRVPGVVESDSLGFSNGVKGIN-VNVPRDRKAARVGAQVQADVFRKSQRFGGG-GNRASTGHVPSKNSLEGGRNDPRLVGVCVDVGIGADRAGRGGLARLRAETRD---------GGGS-----RLLAGT----AVEALLELASAEGGIFRNVLTYV 2194
            GL +A   LLAE   + C+ +D  G+T LH AA QG +D    L++AGA V                               G  +R + +  C   E RSTAL  XXXXXXXXXXXXXX AGF   Q DE G+T AEISAR GH SS  ATRRLLGG    DRGGKLV++YVNMV++DV  V GL  GGAFLDWQD     + LHRA +F H  + ++L+ AGA+ N+ +    +P                                                      S E RD   G TPL+ AS+++ A ++R+L+  GADV SRS A                            + +   GA AG+                       IG GDP   R + P+ P    G +      + + +A +RI   L +ARKDR WRRRGWLVVL +R+   A A        VPG     S    +G K  + + +PR      V A     V   S + G   G   S+  +P  N + GG +   L G  V +       G    A   ++  +         GGGS     ++   T     V+ALL LA+ E G+FR V+ Y+
Sbjct:   60 GLTFAVQALLAER-RTACDAKDRFGKTPLHWAAGQGHVDTVLALVDAGALVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPNRYNCQGRC-HAELRSTALXXXXXXXXXXXXXXXXSAGFCNGQPDETGVTAAEISARVGHESSREATRRLLGG----DRGGKLVYDYVNMVSQDVATVCGLAQGGAFLDWQDNHRRRSPLHRAVYFGHFQILKILLAAGANPNVADNHAVTPLHIYDTHARTDDSYTPLHLAVVYNRIGVTRLLLDASAS----------------SLEVRDSFHGITPLAWASKFSFATMLRILLSMGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNE-GADAGS----------------------AIGLGDPP--RHKGPQSPPILPGAVNRTGWLKNETLA-TRIQLALSNARKDRTWRRRGWLVVLARRQ---AMAMAV-----VPGTTSRASKTSVSGNKSDSKMTIPRILATTGVDADTGRRVHLASHQEGTRQGIVRSSSDLPHSNDVPGGWSHGNL-GNSVPL----QSKGSHNTAIFTSQISESSSMQLGWAGGGSAGHIDKVTGWTPGQGVVQALLGLAAVEVGVFRGVMRYI 629
[Close]
BLAST of mRNA_C-linearis_contig83.16042.1 vs. uniprot
Match: A0A6H5L664_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L664_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 9.910e-41
Identity = 212/633 (33.49%), Postives = 273/633 (43.13%), Query Frame = 2 
Query:  374 GLVYAFLTLLAEGISSCCNLRDALGRTALHEAAEQGDIDVAKILLNAGARVDPRCQRMVTPLMLAARGGHGDVVRLLLREGAGGADRQDDE--CSRVEWRSTALHHXXXXXXXXXXXXXXDAGFYRDQHDEAGLTPAEISARAGHASSLTATRRLLGGAGGGDRGGKLVHNYVNMVAEDVDIVRGLVDGGAFLDWQDETGGETALHRAAHFQHSHVHEVLIGAGADVNLRNVRGGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXST-EHRDLERGQTPLSEASEYALAPIIRLLVEAGADVESRSTAGLTALHWACRFNSPDSVAVLLAAGADPGAAEQAAGAAAGTVGTTSLLPQPPIGARKKLKAEDVIGFGDPISRRAEDPRRPFMGELRAAAERRLDPVARSRIAHLLRDARKDRAWRRRGWLVVLVKRRDDDARASLCGKIPRVPGVVESDSLGFSNGVKGI-NVNVPRDRKAARV-GAQVQADVFRKSQRFGGGGNRASTGHVPSKNSLEGGRNDPRLVGVCVDVGIGA-------DRAGRGGLARLRAETRDGGGSR-------LLAGT-------AVEALLELASAEGGIFRNVLTYV 2194
            GL +A   LLAE   + C+ +D  G+T LH AA QG +D    L+NAGA V                               G  +R + +  C   E RSTALH+               AGF   Q DE G+T AEISAR GH SS  ATRRLLGG    DRGGKLV++YVNMV++DV  V GL  GGAFLDWQD     + LHRA +F H  + ++L+ AGA+ N+ +    +P               XXXXXXXXXXXXXXXXXXXXXXXXXX             S+ E RD   G TPL+ AS+ +   ++R+L+  GADV SRS                              + +   GA AG+                      V G GDP             G        +   +A +RI   L  ARKDR WRRRGWLVVL +R+           +  VPG     S  +  G +G   + +PR      V G  V  D+    Q+     N   +       +      D       +  G GA       D  G    + L A +    GS        + +GT       A+E LL LA+ E G+FRNV+ +V
Sbjct:   67 GLTFAVQALLAER-RTACDAKDRFGKTPLHWAAGQGHVDTVLALVNAGALVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAPNRYNCQGRC-HAELRSTALHYAAEGGHVGVIIALLSAGFCNGQPDETGVTAAEISARVGHESSREATRRLLGG----DRGGKLVYDYVNMVSQDVATVCGLAQGGAFLDWQDNHRRRSPLHRAVYFGHFQILKILLAAGANPNVADNHAVTPLHMVAVKGCEAEAAEXXXXXXXXXXXXXXXXXXXXXXXXXXRIGVTRLLLDASASSLEVRDSFHGITPLAWASKLSFTTMLRILLSMGADVNSRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNE-GADAGS----------------------VTGLGDPPGHTGPQSPPILPGAANQTGRPKNGALA-TRIQLALSKARKDRTWRRRGWLVVLARRQ--------AMTMAVVPGTTSRASKTYVRGNQGHPRMTIPRIPVMTGVDGKMVVEDLTGADQKRTRVANETFSADGGGAETCRKENPDLHCKQTSIVRGEGASSFHRFFDGTGTNFTSLLSAPSSAQLGSTGGDITGYVGSGTGWAPERGAIETLLWLAAMEEGVFRNVMRFV 661
[Close]
BLAST of mRNA_C-linearis_contig83.16042.1 vs. uniprot
Match: D7G7L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L7_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 4.830e-37
Identity = 89/183 (48.63%), Postives = 108/183 (59.02%), Query Frame = 2 
Query:  506 LNAGARVDPRCQRMVTPLMLAARGGHGDVVRLLLREGAGGADRQDDECSRVEWRSTALHHXXXXXXXXXXXXXXDAGFYRDQHDEAGLTPAEISARAGHASSLTATRRLLGGAGGGDRGGKLVHNYVNMVAEDVDIVRGLVDGGAFLDWQDETGGETALHRAAHFQHSHVHEVLIGAGADVNL 1054
            ++AGA VD R      PLMLAA GGH  VVR LL  GAG  +R +   S                          AGF + QHDE G+T AEISAR GH SS  ATRRLLGG    DRGGKLV++YVNMV+++V  V GLV GGAFLDWQD     + LHRA +F HS + ++L+  GA+ N+
Sbjct:    1 MDAGALVDSRDHFKAAPLMLAALGGHERVVRCLLYAGAGAPNRYNSLLS--------------------------AGFCKGQHDETGVTAAEISARVGHESSREATRRLLGG----DRGGKLVYDYVNMVSQNVATVYGLVKGGAFLDWQDSHRRRSPLHRAVNFGHSQILQILLTTGANPNV 153
[Close]
BLAST of mRNA_C-linearis_contig83.16042.1 vs. uniprot
Match: D7G7L8_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L8_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 5.710e-13
Identity = 58/144 (40.28%), Postives = 72/144 (50.00%), Query Frame = 2 
Query: 1313 IIRLLVEAGADVESRSTAGLTALHWACRFNSPDSVAVLLAAGADPGAAEQAAGAAAGTVGTTSLLPQPPIGARKKLKAEDVIGFGDPISRRAEDPRRPFMGELRAAAERRLDPVARSRIAHLLRDARKDRAWRRRGWLVVLVKR 1744
            ++R+L+ AGADV SRS+AG T L+WACR N+ D V  LL AGADP   +   GA AG+                      V G GDP             G +      + + +A +RI   L  ARKDR WRRRGWLVVL  R
Sbjct:    1 MLRVLLNAGADVNSRSSAGSTPLYWACRLNTADIVECLLLAGADPDYLDNQ-GADAGS----------------------VTGLGDPPRHTGRQSPPILPGAVNETGRLKNEALA-TRIRLALSKARKDRTWRRRGWLVVLATR 120
[Close]
BLAST of mRNA_C-linearis_contig83.16042.1 vs. uniprot
Match: D7G159_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G159_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 6.310e-9
Identity = 70/224 (31.25%), Postives = 100/224 (44.64%), Query Frame = 2 
Query:  446 GRTALHEAAEQGDIDVAKILLNAGARVDPRCQRMVTPLMLAARGGHGDVVRLLLREGAGGADRQDDECSRVEWRSTALHHXXXXXXXXXXXXXX---------DAGFYRDQHDEAGLTPAEISARAGHASSLTATRRLLGGAGGGDRGGKLVHNYVNMVAE--DVDIVRGLV--DGGAFLDWQDETGGETALHRAAHFQHSHVHEVLIGAGADVNLRNVRGGSP 1078
            GRTALH+AA QGD+ + K ++  GAR+D        P+ LAA  G+   ++ L+R G           S  EWRS AL                         DAG      D  G TP  ISA+ GH S +    R+L   G    G     + +  VA   +++++R LV  +GG  L     +   TALH +A + H+    +L+ AGAD    +  GG+P
Sbjct:  114 GRTALHKAACQGDVQIIKKVIEGGARLDALDAEEYMPIHLAADEGNLPALKELVRAG-----------SDPEWRSGALQPPLANACMSGRTKVAKYLLETCNVDAG----TADSVGYTPLAISAQGGHVSIV----RMLLKRGVALLGKNAYRDAITGVAMTGNMEMLRELVYVEGGVHLLGAKTSQLMTALHFSAGYCHARATALLLHAGADEGAVDRNGGTP 318
[Close]
BLAST of mRNA_C-linearis_contig83.16042.1 vs. uniprot
Match: A0A8J9UWK9_BRAAE (Hypothetical protein n=1 Tax=Brassicogethes aeneus TaxID=1431903 RepID=A0A8J9UWK9_BRAAE)

HSP 1 Score: 71.2 bits (173), Expect = 9.400e-9
Identity = 63/213 (29.58%), Postives = 94/213 (44.13%), Query Frame = 2 
Query:  428 NLRDA-LGRTALHEAAEQGDIDVAKILLNAGARVDPRCQRMVTPLMLAARGGHGDVVRLLLREGAGGADRQDDECSRVEWRSTALHHXXXXXXXXXXXXXXDAGFYRDQHDEAGLTPAEISARAGHASSLTATRRLLGGAGGGDRGGKLVHNYVNMVAE--DVDIVRGLVDGGAFLDWQDETGGETALHRAAHFQHSHVHEVLIGAGADVNLR 1057
            NLR +   RTALH+AA  G++++AK+LL+  A +D +     +PLM A    H +  + L+  GA      D      ++ STALH                     D  D  G +P   +    H    TA   +  GA    RG K     +++ A   +V+I + L+   A +D QD  G    ++ A    H+   + LI  GADVNLR
Sbjct: 3286 NLRSSKYNRTALHDAAATGNVEIAKVLLSKDADIDAQDINGYSPLMFAVNKNHTETAKFLINHGA------DVNLRSSKYNSTALHDAAATENVEIAKVLLSKDADIDAQDINGYSPLMFAVIKNHTE--TAKFLINKGADVNLRGSKSNATALHVAAATGNVEIAKVLLSKDADIDAQDINGYSPLIY-AVRKNHTETAKFLINKGADVNLR 3489
[Close]
BLAST of mRNA_C-linearis_contig83.16042.1 vs. uniprot
Match: Q8C6Y6-2 (Isoform 2 of Ankyrin repeat and SOCS box protein 14 n=4 Tax=Mus TaxID=10088 RepID=Q8C6Y6-2)

HSP 1 Score: 63.5 bits (153), Expect = 9.310e-7
Identity = 33/63 (52.38%), Postives = 45/63 (71.43%), Query Frame = 2 
Query:  428 NLRDALGRTALHEAAEQGDIDVAKILLNAGARVDPRCQRMVTPLMLAARGGHGDVVRLLLREG 616
            NLR A  RTALHEAA+ G +D+ K++L +GA  D R     TPL LAA+GGH  +++LLL++G
Sbjct:   13 NLRCANERTALHEAAKLGRLDMVKLMLASGAYPDARSSYGFTPLALAAQGGHTGIMQLLLQKG 75
[Close]
BLAST of mRNA_C-linearis_contig83.16042.1 vs. uniprot
Match: UPI001D1BB115 (ankyrin repeat-containing domain protein n=1 Tax=Microdochium trichocladiopsis TaxID=1682393 RepID=UPI001D1BB115)

HSP 1 Score: 63.9 bits (154), Expect = 1.000e-6
Identity = 33/68 (48.53%), Postives = 47/68 (69.12%), Query Frame = 2 
Query:  416 SSCCNLRDALGRTALHEAAEQGDIDVAKILLNAGARVDPRCQRMVTPLMLAARGGHGDVVRLLLREGA 619
            S   +LR+++G +ALH+AAE GD D+A++LL+ GARVD R  + +TPL +A +  H    RLLL  GA
Sbjct:  193 SKLVHLRNSIGSSALHQAAEAGDEDMARLLLSYGARVDSRDIQGLTPLCVAIKNNHLATARLLLEAGA 260
[Close]
BLAST of mRNA_C-linearis_contig83.16042.1 vs. uniprot
Match: A0A813HDF2_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HDF2_POLGL)

HSP 1 Score: 58.5 bits (140), Expect = 3.000e-6
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 2 
Query:  437 DALGRTALHEAAEQGDIDVAKILLNAGARVDPRCQRMVTPLMLAARGGHGDVVRLLLREGA 619
            D    TALH  A QGD+ + KIL+ AGA+VDPR  +  TPL++AA+G H  V+  L+  GA
Sbjct:   75 DPCNYTALHLFAGQGDLAMCKILIAAGAQVDPRSSKDETPLIMAAQGKHMAVIEFLVEAGA 135
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig83.16042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7M3_ECTSI4.460e-4340.33Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5L5T2_9PHAE2.480e-4232.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L664_9PHAE9.910e-4133.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7L7_ECTSI4.830e-3748.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G7L8_ECTSI5.710e-1340.28Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7G159_ECTSI6.310e-931.25Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A8J9UWK9_BRAAE9.400e-929.58Hypothetical protein n=1 Tax=Brassicogethes aeneus... [more]
Q8C6Y6-29.310e-752.38Isoform 2 of Ankyrin repeat and SOCS box protein 1... [more]
UPI001D1BB1151.000e-648.53ankyrin repeat-containing domain protein n=1 Tax=M... [more]
A0A813HDF2_POLGL3.000e-649.18Hypothetical protein n=2 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig83contigC-linearis_contig83:278026..282318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue2.2e-40
Seed eggNOG ortholog2880.D7G7M3
Preferred nameASB7
KEGG koko:K10329
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0071704,GO:1901564
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-22_001900.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons2
Model size2566
Cds size2043
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig83.16042.1prot_C-linearis_contig83.16042.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig83 279907..281949 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930621.1120095-UTR-C-linearis_contig83:278025..2781131622930621.1120095-UTR-C-linearis_contig83:278025..278113Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 278026..278113 +
1690881163.6192725-UTR-C-linearis_contig83:278025..2781131690881163.6192725-UTR-C-linearis_contig83:278025..278113Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 278026..278113 +
1622930621.1263642-UTR-C-linearis_contig83:279840..2799061622930621.1263642-UTR-C-linearis_contig83:279840..279906Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 279841..279906 +
1690881163.6298547-UTR-C-linearis_contig83:279840..2799061690881163.6298547-UTR-C-linearis_contig83:279840..279906Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 279841..279906 +
1622930621.1557934-UTR-C-linearis_contig83:281949..2823181622930621.1557934-UTR-C-linearis_contig83:281949..282318Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 281950..282318 +
1690881163.6467023-UTR-C-linearis_contig83:281949..2823181690881163.6467023-UTR-C-linearis_contig83:281949..282318Chordaria linearis ClinC8C monoicousUTRC-linearis_contig83 281950..282318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930621.1415486-CDS-C-linearis_contig83:279906..2819491622930621.1415486-CDS-C-linearis_contig83:279906..281949Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 279907..281949 +
1690881163.6379952-CDS-C-linearis_contig83:279906..2819491690881163.6379952-CDS-C-linearis_contig83:279906..281949Chordaria linearis ClinC8C monoicousCDSC-linearis_contig83 279907..281949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig83.16042.1

>prot_C-linearis_contig83.16042.1 ID=prot_C-linearis_contig83.16042.1|Name=mRNA_C-linearis_contig83.16042.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=681bp
MMASHSHHPMENQKPAGSHSEDSERDSHPAARGSTAGDVRAEHDAVEAVE
ATSSVSEVERILCRGGGGGVSRGGLVYAFLTLLAEGISSCCNLRDALGRT
ALHEAAEQGDIDVAKILLNAGARVDPRCQRMVTPLMLAARGGHGDVVRLL
LREGAGGADRQDDECSRVEWRSTALHHAARGGHADLVSILLDAGFYRDQH
DEAGLTPAEISARAGHASSLTATRRLLGGAGGGDRGGKLVHNYVNMVAED
VDIVRGLVDGGAFLDWQDETGGETALHRAAHFQHSHVHEVLIGAGADVNL
RNVRGGSPLHVAASTGCARIMAALLQAGANREARMDNGRSPLHLAVINNK
PDAVLLLLRAGVSTEHRDLERGQTPLSEASEYALAPIIRLLVEAGADVES
RSTAGLTALHWACRFNSPDSVAVLLAAGADPGAAEQAAGAAAGTVGTTSL
LPQPPIGARKKLKAEDVIGFGDPISRRAEDPRRPFMGELRAAAERRLDPV
ARSRIAHLLRDARKDRAWRRRGWLVVLVKRRDDDARASLCGKIPRVPGVV
ESDSLGFSNGVKGINVNVPRDRKAARVGAQVQADVFRKSQRFGGGGNRAS
TGHVPSKNSLEGGRNDPRLVGVCVDVGIGADRAGRGGLARLRAETRDGGG
SRLLAGTAVEALLELASAEGGIFRNVLTYV*
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mRNA from alignment at C-linearis_contig83:278026..282318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig83.16042.1 ID=mRNA_C-linearis_contig83.16042.1|Name=mRNA_C-linearis_contig83.16042.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4293bp|location=Sequence derived from alignment at C-linearis_contig83:278026..282318+ (Chordaria linearis ClinC8C monoicous)
TCACATCATCGTTGGTCTGGACGATTTGGGGAAAGTGTTGTACAAGCTCT
CTATCGCCTTCAAATTATAATTCTCCCGCCTTCGCCCGGTAAGAGAGAAA
GAGAGAGCAGACCCCGTGTGGGTGTGGGTGTGAGACAGAGAGAGATGATG
GAGAAGAGACCATGAACAAACCATGAAATGAAGAAGCCGTTTTTTTCGGC
GGGGCAATTTTCAGTTTTGAGAAAGCTGCACGCACGCTGCTATGTACCAG
TATCTAGCAGCAAACCGTCTGAGAGGCAGCAAAAACGGCACAATCCAGAA
GGTCCATGTAGAACGCAAGAACGCAAGCGCGAGTGTGCGCGAATTTGCTG
GAGCGTGTGAATTTCACCGACGGGAGGGAATCCGGTGTCCGTTCGGGGGT
GGATAAAATTCCCCCCCTGCTTGGTACGTGCAGGACGTACGTACGTACGT
ACGTAGTTTTTCGCTGCTGGTAAATTTGAGGTGACACCAAACTTAATAAT
GATCGAATCAGGCGACATGAATGCCGTCGTAGATTGTAGAGTTGATACGT
TGGTTACAACCTTATCGCTCAACATTGTACCAGTATCTAGCATTCTTGGA
TTCAACACAACAACCAGAAAAACGACGAGGCATCTACTGTGTAGACTTCT
GTCTTATTATCACGTCATAAAAGAGCGGCGGACCAAGGGGGTTCCGTGAT
TTGTTTGTCTGAAGAGCTGTGAGACAAAGTGTGAACATTGACCGGCGGTG
TGATGGTAGGATCGTCCAGGACCGCGAGAGACAGAGAGCAACGAGCAAAT
GGTGCGTGTTCATGCGCATGTTAATGCATGAGTCTGCATAAAACGCTTAG
GGCTTGATAGAAATAAAACCCCTGGCGACAATTTTGACCTCTGTGTCCCC
TGGTGATTCGATGCGGCATGATACTACGTATGTGCGTGGACATGTTATAT
CGCTTTGAGCTCTCGTTTGTTACGGGCGCGTTTCCCTCGACCTCTCTTCT
CTTGCAGATATCAACCAGTGGCCGTATCATTATGTGCCTTGTCTTCATCA
CATCATCAGTATCGGTTGTTCCCGTGCTGTGCCGCATACATACTGTACCC
CTACAGGATCAGATCGCCCCACGTCGCGACAGTAGCCACTTCACAGCGTT
TGATGAATTAACCTTCAAATCAAACACACAAACCTTTACAACTTCATCTC
TGTTGAAAACTATGAATTTCTGCTGTTAAACACATGATGGATGTATCATG
TTGTTGTGTTTGTGTGTGTGTTTTCGTCCCATTTATTTGGCGACAGTCCC
TTTTCCGATCAAGGCGAGACGTGTACTACACGTTGCGGTATATAAAGAGT
ACTACACTTGTTCAGTGTATTTTTCTGTACAATTAGAACCAACCGGGGTC
ACACAGGAGGGGGTAAACACTGGGGGGGGTTTCCTCTTTTTCTGTTTCTT
TTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTGGATTTTATCGCGAGA
AGGGAGCAGCCATCCCTTTTCCTCGTCAACGTGCTTAGTCGAAGCTTGGT
ACTCACGAGCTTTTTTCAGCTATGTTGTCGCTTTCACCAGCAAAGTCTCA
AACGAACCACCTTTGCTTGGAATTGAACTCCAGACTTTGCTGCTAGTGGG
TTCGAGGTTAAACCACTAGTCCACCGGGGCGACCGGCGTTTCAGCTTTGC
ACAAACAACGACTGATCACCCTGTACAAACGTGCAGTGAAAAAATCTCCC
CTTTGCTCCTCCCGATGTCGCCTCTCTTCTCGCCTTCAAACACGTCCTTC
TCCAACCATATCCAGGGCCAAGTTTCGGCGACTGCACCACAACATCGTAC
CCGGTCATCGTCTCAGCTGCCACAAGCACGGATGATGGCGAGCCACTCCC
ACCACCCCATGGAGAACCAAAAGCCTGCAGGTTCCCACTCCGAAGACAGT
GAGCGAGACAGCCATCCCGCCGCGCGGGGAAGTACAGCCGGCGATGTCAG
AGCCGAACACGATGCGGTCGAAGCGGTCGAAGCGACGAGCAGTGTGAGTG
AAGTGGAGAGGATCCTCTGCCGCGGCGGCGGCGGCGGCGTGTCTCGAGGT
GGGTTGGTCTACGCCTTCCTGACGCTGCTAGCCGAGGGAATATCCTCGTG
CTGCAACCTTCGGGACGCCCTCGGGCGGACGGCCCTCCACGAGGCCGCGG
AGCAGGGAGACATCGACGTGGCCAAAATCCTCCTGAACGCCGGTGCACGC
GTCGATCCTCGCTGCCAGCGCATGGTCACCCCTCTTATGCTGGCAGCTCG
GGGGGGGCATGGCGACGTCGTGCGTCTGCTCCTGCGCGAGGGAGCTGGCG
GGGCCGATCGTCAAGACGACGAATGTTCTCGGGTGGAATGGAGGAGCACT
GCTCTCCACCACGCAGCCAGGGGCGGCCACGCGGATCTGGTGTCGATCCT
CCTCGATGCCGGCTTCTACAGGGACCAGCACGACGAGGCGGGGTTGACCC
CGGCCGAGATCTCTGCCCGAGCGGGACACGCTTCGTCGCTGACGGCCACC
CGTCGCCTACTCGGCGGCGCAGGCGGCGGCGACAGGGGAGGGAAGCTGGT
GCACAACTACGTCAACATGGTCGCCGAGGACGTGGACATCGTTCGCGGCC
TTGTCGACGGCGGAGCCTTCCTGGACTGGCAGGACGAGACCGGGGGAGAG
ACGGCGTTGCACCGCGCCGCGCACTTCCAACACTCTCACGTGCACGAGGT
TTTAATCGGTGCTGGAGCCGACGTCAACCTCCGGAACGTCCGCGGCGGAT
CCCCTCTCCACGTAGCGGCGAGCACGGGCTGCGCGAGAATCATGGCGGCC
CTGCTTCAGGCCGGGGCCAACCGAGAGGCAAGGATGGACAACGGCCGTTC
CCCCCTCCACCTCGCCGTGATCAATAACAAGCCCGACGCCGTGCTCTTGT
TGCTCCGCGCCGGGGTCAGCACGGAGCATCGAGACCTGGAGCGCGGTCAG
ACCCCCCTGTCCGAAGCATCAGAGTACGCACTGGCCCCCATCATCCGCCT
CCTCGTGGAAGCCGGGGCCGACGTGGAGTCGAGATCGACGGCGGGCCTTA
CGGCGCTCCACTGGGCCTGCCGCTTCAACAGCCCCGACAGCGTGGCGGTC
TTGTTAGCGGCGGGGGCGGACCCGGGAGCGGCAGAGCAGGCCGCGGGGGC
GGCGGCGGGAACAGTGGGTACAACGAGCCTCTTGCCTCAACCGCCAATAG
GTGCACGGAAAAAGCTCAAGGCAGAGGACGTAATCGGCTTCGGGGACCCA
ATAAGCCGACGGGCCGAAGATCCACGGCGGCCGTTCATGGGCGAGCTGCG
AGCCGCGGCAGAGCGGCGGCTGGACCCGGTGGCGCGTTCGCGAATCGCTC
ATCTCCTGCGCGACGCTAGGAAGGATCGCGCGTGGCGCCGCCGTGGGTGG
CTGGTGGTGCTCGTGAAGCGTCGGGACGATGACGCGAGAGCGTCGCTTTG
CGGGAAAATTCCAAGGGTTCCCGGTGTCGTGGAGAGCGACAGTCTAGGAT
TTAGCAACGGTGTGAAGGGCATAAACGTTAACGTTCCCCGCGACCGCAAG
GCAGCCCGTGTCGGTGCACAAGTACAAGCAGATGTCTTCCGGAAATCACA
AAGGTTTGGTGGTGGCGGAAACCGTGCGTCCACCGGGCACGTTCCGTCGA
AAAACTCTCTTGAGGGGGGGAGGAATGACCCCCGGCTCGTCGGTGTTTGT
GTCGATGTTGGTATTGGAGCGGACAGGGCGGGGAGGGGGGGGTTGGCGAG
ACTGCGGGCCGAGACGAGGGACGGCGGTGGGAGTCGGCTCTTGGCCGGCA
CAGCAGTCGAGGCCCTGCTCGAGCTCGCCTCGGCCGAGGGAGGCATTTTT
CGCAATGTGCTGACCTACGTCTGAGGCTCGAGGCAAGCACACGGCTGGCT
TCATCCTTCATGGTGTCTGGAGGTTTTTAGGCTGTGTCTGGTTGGCCAGT
GGGATGACATGCGTGTACATACGGGAAGATGTAGCGCAAAGAGGGAGGAA
AGGACTTGGCTTCGAAGCGTAGACGTGGGGAGTTCTGTGCAGCTGAAGGA
GAAGAAAGACGAGCGAAGAATGCACGGAGGTAATGATGCGCTAAAACATG
ACAGCACGCGACCAATCAAGCACAGAGGGGACAACCGCGTTGCTGTTGGC
CGCTCGCCCCGGGGGTCACGTGGGTTTTCCCTTCCGTGCTTCCTAAGAGG
CGGGGTACATGCAACATACCTACCTAGCAAGGTTCTCCTTGAG
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Coding sequence (CDS) from alignment at C-linearis_contig83:278026..282318+

>mRNA_C-linearis_contig83.16042.1 ID=mRNA_C-linearis_contig83.16042.1|Name=mRNA_C-linearis_contig83.16042.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4086bp|location=Sequence derived from alignment at C-linearis_contig83:278026..282318+ (Chordaria linearis ClinC8C monoicous)
ATGATGGCGAGCCACTCCCACCACCCCATGGAGAACCAAAAGCCTGCAGG
TTCCCACTCCGAAGACAGTGAGCGAGACAGCCATCCCGCCGCGCGGGGAA
GTACAGCCGGCGATGTCAGAGCCGAACACGATGCGGTCGAAGCGGTCGAA
GCGACGAGCAGTGTGAGTGAAGTGGAGAGGATCCTCTGCCGCGGCGGCGG
CGGCGGCGTGTCTCGAGGTGGGTTGGTCTACGCCTTCCTGACGCTGCTAG
CCGAGGGAATATCCTCGTGCTGCAACCTTCGGGACGCCCTCGGGCGGACG
GCCCTCCACGAGGCCGCGGAGCAGGGAGACATCGACGTGGCCAAAATCCT
CCTGAACGCCGGTGCACGCGTCGATCCTCGCTGCCAGCGCATGGTCACCC
CTCTTATGCTGGCAGCTCGGGGGGGGCATGGCGACGTCGTGCGTCTGCTC
CTGCGCGAGGGAGCTGGCGGGGCCGATCGTCAAGACGACGAATGTTCTCG
GGTGGAATGGAGGAGCACTGCTCTCCACCACGCAGCCAGGGGCGGCCACG
CGGATCTGGTGTCGATCCTCCTCGATGCCGGCTTCTACAGGGACCAGCAC
GACGAGGCGGGGTTGACCCCGGCCGAGATCTCTGCCCGAGCGGGACACGC
TTCGTCGCTGACGGCCACCCGTCGCCTACTCGGCGGCGCAGGCGGCGGCG
ACAGGGGAGGGAAGCTGGTGCACAACTACGTCAACATGGTCGCCGAGGAC
GTGGACATCGTTCGCGGCCTTGTCGACGGCGGAGCCTTCCTGGACTGGCA
GGACGAGACCGGGGGAGAGACGGCGTTGCACCGCGCCGCGCACTTCCAAC
ACTCTCACGTGCACGAGGTTTTAATCGGTGCTGGAGCCGACGTCAACCTC
CGGAACGTCCGCGGCGGATCCCCTCTCCACGTAGCGGCGAGCACGGGCTG
CGCGAGAATCATGGCGGCCCTGCTTCAGGCCGGGGCCAACCGAGAGGCAA
GGATGGACAACGGCCGTTCCCCCCTCCACCTCGCCGTGATCAATAACAAG
CCCGACGCCGTGCTCTTGTTGCTCCGCGCCGGGGTCAGCACGGAGCATCG
AGACCTGGAGCGCGGTCAGACCCCCCTGTCCGAAGCATCAGAGTACGCAC
TGGCCCCCATCATCCGCCTCCTCGTGGAAGCCGGGGCCGACGTGGAGTCG
AGATCGACGGCGGGCCTTACGGCGCTCCACTGGGCCTGCCGCTTCAACAG
CCCCGACAGCGTGGCGGTCTTGTTAGCGGCGGGGGCGGACCCGGGAGCGG
CAGAGCAGGCCGCGGGGGCGGCGGCGGGAACAGTGGGTACAACGAGCCTC
TTGCCTCAACCGCCAATAGGTGCACGGAAAAAGCTCAAGGCAGAGGACGT
AATCGGCTTCGGGGACCCAATAAGCCGACGGGCCGAAGATCCACGGCGGC
CGTTCATGGGCGAGCTGCGAGCCGCGGCAGAGCGGCGGCTGGACCCGGTG
GCGCGTTCGCGAATCGCTCATCTCCTGCGCGACGCTAGGAAGGATCGCGC
GTGGCGCCGCCGTGGGTGGCTGGTGGTGCTCGTGAAGCGTCGGGACGATG
ACGCGAGAGCGTCGCTTTGCGGGAAAATTCCAAGGGTTCCCGGTGTCGTG
GAGAGCGACAGTCTAGGATTTAGCAACGGTGTGAAGGGCATAAACGTTAA
CGTTCCCCGCGACCGCAAGGCAGCCCGTGTCGGTGCACAAGTACAAGCAG
ATGTCTTCCGGAAATCACAAAGGTTTGGTGGTGGCGGAAACCGTGCGTCC
ACCGGGCACGTTCCGTCGAAAAACTCTCTTGAGGGGGGGAGGAATGACCC
CCGGCTCGTCGGTGTTTGTGTCGATGTTGGTATTGGAGCGGACAGGGCGG
GGAGGGGGGGGTTGGCGAGACTGCGGGCCGAGACGAGGGACGGCGGTGGG
AGTCGGCTCTTGGCCGGCACAGCAGTCGAGGCCCTGCTCGAGCTCGCCTC
GGCCGAGGGAGGCATTTTTCGCAATGTGCTGACCTACGTCTGAATGATGG
CGAGCCACTCCCACCACCCCATGGAGAACCAAAAGCCTGCAGGTTCCCAC
TCCGAAGACAGTGAGCGAGACAGCCATCCCGCCGCGCGGGGAAGTACAGC
CGGCGATGTCAGAGCCGAACACGATGCGGTCGAAGCGGTCGAAGCGACGA
GCAGTGTGAGTGAAGTGGAGAGGATCCTCTGCCGCGGCGGCGGCGGCGGC
GTGTCTCGAGGTGGGTTGGTCTACGCCTTCCTGACGCTGCTAGCCGAGGG
AATATCCTCGTGCTGCAACCTTCGGGACGCCCTCGGGCGGACGGCCCTCC
ACGAGGCCGCGGAGCAGGGAGACATCGACGTGGCCAAAATCCTCCTGAAC
GCCGGTGCACGCGTCGATCCTCGCTGCCAGCGCATGGTCACCCCTCTTAT
GCTGGCAGCTCGGGGGGGGCATGGCGACGTCGTGCGTCTGCTCCTGCGCG
AGGGAGCTGGCGGGGCCGATCGTCAAGACGACGAATGTTCTCGGGTGGAA
TGGAGGAGCACTGCTCTCCACCACGCAGCCAGGGGCGGCCACGCGGATCT
GGTGTCGATCCTCCTCGATGCCGGCTTCTACAGGGACCAGCACGACGAGG
CGGGGTTGACCCCGGCCGAGATCTCTGCCCGAGCGGGACACGCTTCGTCG
CTGACGGCCACCCGTCGCCTACTCGGCGGCGCAGGCGGCGGCGACAGGGG
AGGGAAGCTGGTGCACAACTACGTCAACATGGTCGCCGAGGACGTGGACA
TCGTTCGCGGCCTTGTCGACGGCGGAGCCTTCCTGGACTGGCAGGACGAG
ACCGGGGGAGAGACGGCGTTGCACCGCGCCGCGCACTTCCAACACTCTCA
CGTGCACGAGGTTTTAATCGGTGCTGGAGCCGACGTCAACCTCCGGAACG
TCCGCGGCGGATCCCCTCTCCACGTAGCGGCGAGCACGGGCTGCGCGAGA
ATCATGGCGGCCCTGCTTCAGGCCGGGGCCAACCGAGAGGCAAGGATGGA
CAACGGCCGTTCCCCCCTCCACCTCGCCGTGATCAATAACAAGCCCGACG
CCGTGCTCTTGTTGCTCCGCGCCGGGGTCAGCACGGAGCATCGAGACCTG
GAGCGCGGTCAGACCCCCCTGTCCGAAGCATCAGAGTACGCACTGGCCCC
CATCATCCGCCTCCTCGTGGAAGCCGGGGCCGACGTGGAGTCGAGATCGA
CGGCGGGCCTTACGGCGCTCCACTGGGCCTGCCGCTTCAACAGCCCCGAC
AGCGTGGCGGTCTTGTTAGCGGCGGGGGCGGACCCGGGAGCGGCAGAGCA
GGCCGCGGGGGCGGCGGCGGGAACAGTGGGTACAACGAGCCTCTTGCCTC
AACCGCCAATAGGTGCACGGAAAAAGCTCAAGGCAGAGGACGTAATCGGC
TTCGGGGACCCAATAAGCCGACGGGCCGAAGATCCACGGCGGCCGTTCAT
GGGCGAGCTGCGAGCCGCGGCAGAGCGGCGGCTGGACCCGGTGGCGCGTT
CGCGAATCGCTCATCTCCTGCGCGACGCTAGGAAGGATCGCGCGTGGCGC
CGCCGTGGGTGGCTGGTGGTGCTCGTGAAGCGTCGGGACGATGACGCGAG
AGCGTCGCTTTGCGGGAAAATTCCAAGGGTTCCCGGTGTCGTGGAGAGCG
ACAGTCTAGGATTTAGCAACGGTGTGAAGGGCATAAACGTTAACGTTCCC
CGCGACCGCAAGGCAGCCCGTGTCGGTGCACAAGTACAAGCAGATGTCTT
CCGGAAATCACAAAGGTTTGGTGGTGGCGGAAACCGTGCGTCCACCGGGC
ACGTTCCGTCGAAAAACTCTCTTGAGGGGGGGAGGAATGACCCCCGGCTC
GTCGGTGTTTGTGTCGATGTTGGTATTGGAGCGGACAGGGCGGGGAGGGG
GGGGTTGGCGAGACTGCGGGCCGAGACGAGGGACGGCGGTGGGAGTCGGC
TCTTGGCCGGCACAGCAGTCGAGGCCCTGCTCGAGCTCGCCTCGGCCGAG
GGAGGCATTTTTCGCAATGTGCTGACCTACGTCTGA
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