mRNA_C-linearis_contig82.16036.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.16036.1
Unique NamemRNA_C-linearis_contig82.16036.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16036.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:853792..857502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons9
Model size1092
Cds size1092
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930619.6204734-CDS-C-linearis_contig82:853791..8539401622930619.6204734-CDS-C-linearis_contig82:853791..853940Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 853792..853940 -
1690881162.9783752-CDS-C-linearis_contig82:853791..8539401690881162.9783752-CDS-C-linearis_contig82:853791..853940Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 853792..853940 -
1622930619.634262-CDS-C-linearis_contig82:854152..8543031622930619.634262-CDS-C-linearis_contig82:854152..854303Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 854153..854303 -
1690881162.9899266-CDS-C-linearis_contig82:854152..8543031690881162.9899266-CDS-C-linearis_contig82:854152..854303Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 854153..854303 -
1622930619.6500332-CDS-C-linearis_contig82:854562..8547241622930619.6500332-CDS-C-linearis_contig82:854562..854724Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 854563..854724 -
1690881163.00008-CDS-C-linearis_contig82:854562..8547241690881163.00008-CDS-C-linearis_contig82:854562..854724Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 854563..854724 -
1622930619.6816268-CDS-C-linearis_contig82:855237..8553511622930619.6816268-CDS-C-linearis_contig82:855237..855351Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 855238..855351 -
1690881163.0124712-CDS-C-linearis_contig82:855237..8553511690881163.0124712-CDS-C-linearis_contig82:855237..855351Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 855238..855351 -
1622930619.6938348-CDS-C-linearis_contig82:855656..8557861622930619.6938348-CDS-C-linearis_contig82:855656..855786Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 855657..855786 -
1690881163.0228014-CDS-C-linearis_contig82:855656..8557861690881163.0228014-CDS-C-linearis_contig82:855656..855786Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 855657..855786 -
1622930619.711968-CDS-C-linearis_contig82:856288..8563601622930619.711968-CDS-C-linearis_contig82:856288..856360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 856289..856360 -
1690881163.0332465-CDS-C-linearis_contig82:856288..8563601690881163.0332465-CDS-C-linearis_contig82:856288..856360Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 856289..856360 -
1622930619.728873-CDS-C-linearis_contig82:856648..8567041622930619.728873-CDS-C-linearis_contig82:856648..856704Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 856649..856704 -
1690881163.0501435-CDS-C-linearis_contig82:856648..8567041690881163.0501435-CDS-C-linearis_contig82:856648..856704Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 856649..856704 -
1622930619.747185-CDS-C-linearis_contig82:857003..8570931622930619.747185-CDS-C-linearis_contig82:857003..857093Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 857004..857093 -
1690881163.0638106-CDS-C-linearis_contig82:857003..8570931690881163.0638106-CDS-C-linearis_contig82:857003..857093Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 857004..857093 -
1622930619.7677886-CDS-C-linearis_contig82:857334..8575021622930619.7677886-CDS-C-linearis_contig82:857334..857502Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 857335..857502 -
1690881163.0752788-CDS-C-linearis_contig82:857334..8575021690881163.0752788-CDS-C-linearis_contig82:857334..857502Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 857335..857502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16036.1prot_C-linearis_contig82.16036.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 853792..857502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.16036.1

>prot_C-linearis_contig82.16036.1 ID=prot_C-linearis_contig82.16036.1|Name=mRNA_C-linearis_contig82.16036.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=364bp
MEGSWSDTTTRIADGVTQPLSLSHPTANTIPRQGEGITGCCSVLSNVLRV
QRCLTEVWSDLSDDKQSEGRNGSARDTYQVFAARTPSLVAKEDDEANGNR
AEYQRFFFCVVDSTDKLDRLLAALDTPARAEGEHHRVRRMSDKKNDDNDC
RTTDNTVQFNIQEEAAEKAEVAKTLRQLGGGLASDAGVVDLRAVAFWSLA
KRERLWAEDEKLTRAEQTSLRSIRTMQVNHEEVDTVLGGRRKRIEDSMKH
MQRGVEAQSEEWSEILLGLKDGVVRSRLHAQKRTRDILSATEERIASLKA
ELAESEHHVVGLNNESEDFMRAKNAYSRKAELLQHIVEQQRARLEQISAD
LQRTSKEASCRIN*
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mRNA from alignment at C-linearis_contig82:853792..857502-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.16036.1 ID=mRNA_C-linearis_contig82.16036.1|Name=mRNA_C-linearis_contig82.16036.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3711bp|location=Sequence derived from alignment at C-linearis_contig82:853792..857502- (Chordaria linearis ClinC8C monoicous)
ATGGAGGGGAGTTGGAGTGACACAACCACCCGAATAGCAGACGGAGTGAC
ACAGCCGCTTTCTCTTTCACATCCTACAGCCAACACCATCCCCCGGCAAG
GGGAGGGAATAACTGGATGTTGTTCTGTCCTGTCGAACGTGTTGCGGGTG
CAGCGATGTTTGACAGAGGTGTGAGAGAGCCTGCTGTACATAACATGTAC
ACTGAGACTACTGCTGTAGGTATGCTGTATGTCAACACCGTGGATCACCC
CCTGCTTTCAGCATCAAATTTACCCTAATACAGGCTGGGCGTATAAGTAT
GGGTATGGGGTGATACAATGCTCCGTGTAGCTGCCCTCCTCGGAAGGTAG
AATTGCTGCAGTCACGCCTGCAATCCTGAACCTGTTCCCTATCCCTCTCA
ACACATCAGGTTTGGTCCGACCTTTCGGATGATAAGCAATCGGAAGGGCG
CAATGGCTCCGCACGCGACACCTATCAGGTATTCGCTGCACGTACACCAG
TAGTGTTTGAAAACTAAAATGCGCTCCGTGTTATACGCTGATCTGTGGGG
CGAAGAGCACTCTCCACATCGTACACGATCCAGCATGAAATATATTTCCA
CGTACTCTATGTTCACTACTTCGTATATGCATAGCTGGGGAAATACGTGT
GCGACTGAACATCACTCCCTCAACTAGATCTTGCCGTCCTTAATCTTCCT
TTCATGCCGATTCCCGCCTGTCTTTCCTTGCTCGTATGCGTGTGGTTTGG
CCCACATTCGAAAACGGTGCCAAATTGGAAATTGGTGCTTTCCCTCAGAG
TTTGGTCGCCAAAGAAGACGATGAGGCGAACGGCAATCGCGCCGAATATC
AGAGGTGACACTCGATTGATGTTTGGCAGTGAGCGACTGATGAGAATTGT
GCAAGCAGGGATAAAAAAAAACGACAACATGCATAGAATAAACTCTGAGT
ATATTTCACGAGAGCACCCTGCGTTGCTTCCTGCACAATCTATTAGAGCT
TTTCAAGATTGATCTATTGAGCCTATGGTAGGCAGCCCGTGCGCAAGATA
CTCACAGAGTTCACACTGCAGAGATGGCGTTGTTTTTGTGCTAGGATGCT
GACCTTCTAAAACATGCCCTGCTCTACTGTGACCTCCTCCAGGTTTTTCT
TTTGCGTCGTTGATAGCACGGACAAGTTGGACCGCCTCCTGGCAGCACTT
GACACTCCCGCCAGGTAGGTCGGGTACTCGGCCAAGCATGCATTTTGTTT
CGGCACCCAAATGGTGCACCCTGCATCTCTTGTCCTGGGGTGATGTTATA
TGCGCTTGTCCCCCTATAAACATGGGCCTAAGAAGGGAAGCAGTAACCCT
CTGAGCGTGCCGAGCTCTAGCGGACTGTTGAATATCATATGTGCATCGTA
TGTACCTATGCAAGCACCGAATTATCTCGCTCATTTCTTGTGCTTGTTAC
GAATGACGAGGGCGTGATCGTAACTGACAAAGAGCTTCAAGCATGTGTCT
TGTACTTCCCCCCTGCAAGAAATTCCACCCCCTAATCTCCTTAGAGATTT
GCCCCTAGTACGTTGATGCTCCAACTAAGCCGCGGGCGTCAGCGAAGCGT
TTGCCGCCATGGAACGGGAGGAAGATCAACACACCACGGTACTCGACTAG
AGAATTAAGTCTAGCACAGGACAAAACGCTCGCTACTTAGTCGCGTGTTC
CTGTATCCCGCGGCAGGGCCGAGGGTGAGCACCACCGCGTTCGGAGAATG
TCTGATAAAAAAAACGACGATAACGACTGCCGAACTACCGACAACACCGT
GCAGTTCAACATACAAGAGGAAGCTGCAGAAAAAGCGGAAGTGGCTGTGA
GTGGGTCCACAGCGGTTCACCTCTGACCATTGCCCGTCCAACCAAGAGAC
GCGCGCATTGGTAACTGCGAACAGTGTATTTAGCGAGTTTGCTTGTGGGG
TTTAAACACCGAAGACGTGCTACTAACCTTTCCTTTGACTGAAAACAGCG
AACGTAGTGTCAAATTTCCGTCGCTCGCAGCGGTGAGCGCCCAAAAAGCA
GCGATGACGGAATGCAACCATCGCAAGACGGCCGTGCGAGCCATAAGGCG
CGCTTCCTAACACGTGTCATGTTCCGTCCACGCCTGAAACTGATACGGCA
GAAAACCTTGCGCCAGCTGGGTGGTGGTCTTGCGTCGGATGCCGGGGTGG
TTGACCTTCGCGCTGTCGCCTTTTGGTCCCTTGCTAAACGAGAACGGCTG
TGGGCGGAAGACGAGGTGAGCGAAACTCGGTCCAGAGTTGGTATCATAGA
CCATTTTCCGCAGTACTTTTAGGTCTGCCGCCGGTTTATACACATGCCCT
TCTCCAGATTATTGGGGCCTCGGGGTAGATAGCCAGGGATGCCCCTGTAT
CTGACCTTTCCCGGCTTTCCGTCTGCATTCGTCCCCTCCATTTCAGCTGA
ATAAACACATGCTTCGCCTCTGTTGAGTATAGTGCCGTGCCGGCTGGCGT
ATGCACTCGACAGAGCGATTTGTGTTGTACCCTGTGTACGTTGCTGGAAC
CGAGCTCGCGGCTTCGGTTAGGCCAGCTGCTGTTTGAGCGTGTATTGATT
ATCCCAGCGCTTGTTCATATGTATTTCCATCAACCCATGCACTGCTAGAT
GACGGTGCCCACATATTGTCAGTGCGGTCGCAAGCAACCAGTCGACGACC
TCGCTTGCCCTTCGAGGTGCTTCCATATCGATTCACGCTCGCGCCGGAAA
TGGCCCATCCCCTGTTGCCCTGACACAGAAACTGACGAGAGCGGAACAGA
CTTCGCTTAGGAGCATTCGTACCATGCAAGTAAATCACGAAGAGGTGGAC
ACGGTGCTCGGCGGAAGGAGAAAGCGAATCGAGGACAGCATGAAGCACAT
GCAGCGGGGGGTCGAAGCCCAGAGCGAAGAGTGGTCCGAGGTGCGCACTG
TGTATTGTCCGAAACCTACATAGGCAGCACGTCTGGGAGGTTACTTGGAG
AGGAAAGGGGGTGCATGCTGGCCCGCCAAGCACCGGAAGCTGGCCAGAGA
GCCGACCACCGCTCGCTGTACGCTACGATCTGCTCCGCTTTGGCTTTTCT
CGACTGTCTAAAGTATACGCCCTTCCGCTACACTCCGCACACTACGCGAA
CACACACTCGGGCGTGGTTGTCTGCGTTGCGTGTCTGCTCCCACGACAGA
TCCTCCTGGGTTTGAAAGATGGTGTGGTAAGGTCGCGCCTTCACGCCCAG
AAACGAACCCGCGACATCCTATCCGCTACGGAAGAGCGGATAGCCTCACT
TAAGGCTGAGCTCGCGGAGAGCGAGCACCACGTGGTCGGCCTCAACAACG
GTAAGGTTAAGGTTGGTCGACCGGGGAAAGATGGACATGCCGTGCGCACT
GACCGACCAGGCCACCCTACCCCAAGAACTTACCCCAAGCTTACTTGGTT
GCCCCTTGGACTTGTTGACGGATGGCGCCTTGCCAAACAACCGGAAGGTT
GTGCCAAATAGTTGGCCACCAGATTGCAAACCAACTGGCATCCCGAACCT
TTCGTCGCGCAGAGAGCGAGGACTTTATGCGGGCCAAAAACGCGTACTCG
CGAAAGGCAGAGCTTCTGCAGCATATCGTGGAGCAGCAGCGGGCACGGCT
GGAGCAGATATCGGCAGACTTGCAACGAACGTCGAAGGAGGCAAGCTGCC
GTATTAATTGA
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Coding sequence (CDS) from alignment at C-linearis_contig82:853792..857502-

>mRNA_C-linearis_contig82.16036.1 ID=mRNA_C-linearis_contig82.16036.1|Name=mRNA_C-linearis_contig82.16036.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2184bp|location=Sequence derived from alignment at C-linearis_contig82:853792..857502- (Chordaria linearis ClinC8C monoicous)
ATGGAGGGGAGTTGGAGTGACACAACCACCCGAATAGCAGACGGAGTGAC
ACAGCCGCTTTCTCTTTCACATCCTACAGCCAACACCATCCCCCGGCAAG
GGGAGGGAATAACTGGATGTTGTTCTGTCCTGTCGAACGTGTTGCGGGTG
CAGCGATGTTTGACAGAGATGGAGGGGAGTTGGAGTGACACAACCACCCG
AATAGCAGACGGAGTGACACAGCCGCTTTCTCTTTCACATCCTACAGCCA
ACACCATCCCCCGGCAAGGGGAGGGAATAACTGGATGTTGTTCTGTCCTG
TCGAACGTGTTGCGGGTGCAGCGATGTTTGACAGAGGTTTGGTCCGACCT
TTCGGATGATAAGCAATCGGAAGGGCGCAATGGCTCCGCACGCGACACCT
ATCAGGTATTCGCTGCACGTACACCAGTTTGGTCCGACCTTTCGGATGAT
AAGCAATCGGAAGGGCGCAATGGCTCCGCACGCGACACCTATCAGGTATT
CGCTGCACGTACACCAAGTTTGGTCGCCAAAGAAGACGATGAGGCGAACG
GCAATCGCGCCGAATATCAGAGAGTTTGGTCGCCAAAGAAGACGATGAGG
CGAACGGCAATCGCGCCGAATATCAGAGGTTTTTCTTTTGCGTCGTTGAT
AGCACGGACAAGTTGGACCGCCTCCTGGCAGCACTTGACACTCCCGCCAG
GTTTTTCTTTTGCGTCGTTGATAGCACGGACAAGTTGGACCGCCTCCTGG
CAGCACTTGACACTCCCGCCAGGGCCGAGGGTGAGCACCACCGCGTTCGG
AGAATGTCTGATAAAAAAAACGACGATAACGACTGCCGAACTACCGACAA
CACCGTGCAGTTCAACATACAAGAGGAAGCTGCAGAAAAAGCGGAAGTGG
CTGGCCGAGGGTGAGCACCACCGCGTTCGGAGAATGTCTGATAAAAAAAA
CGACGATAACGACTGCCGAACTACCGACAACACCGTGCAGTTCAACATAC
AAGAGGAAGCTGCAGAAAAAGCGGAAGTGGCTAAAACCTTGCGCCAGCTG
GGTGGTGGTCTTGCGTCGGATGCCGGGGTGGTTGACCTTCGCGCTGTCGC
CTTTTGGTCCCTTGCTAAACGAGAACGGCTGTGGGCGGAAGACGAGAAAA
CCTTGCGCCAGCTGGGTGGTGGTCTTGCGTCGGATGCCGGGGTGGTTGAC
CTTCGCGCTGTCGCCTTTTGGTCCCTTGCTAAACGAGAACGGCTGTGGGC
GGAAGACGAGAAACTGACGAGAGCGGAACAGACTTCGCTTAGGAGCATTC
GTACCATGCAAGTAAATCACGAAGAGGTGGACACGGTGCTCGGCGGAAGG
AGAAAGCGAATCGAGGACAGCATGAAGCACATGCAGCGGGGGGTCGAAGC
CCAGAGCGAAGAGTGGTCCGAGAAACTGACGAGAGCGGAACAGACTTCGC
TTAGGAGCATTCGTACCATGCAAGTAAATCACGAAGAGGTGGACACGGTG
CTCGGCGGAAGGAGAAAGCGAATCGAGGACAGCATGAAGCACATGCAGCG
GGGGGTCGAAGCCCAGAGCGAAGAGTGGTCCGAGATCCTCCTGGGTTTGA
AAGATGGTGTGGTAAGGTCGCGCCTTCACGCCCAGAAACGAACCCGCGAC
ATCCTATCCGCTACGGAAGAGCGGATAGCCTCACTTAAGGCTGAGCTCGC
GGAGAGCGAGCACCACGTGGTCGGCCTCAACAACGATCCTCCTGGGTTTG
AAAGATGGTGTGGTAAGGTCGCGCCTTCACGCCCAGAAACGAACCCGCGA
CATCCTATCCGCTACGGAAGAGCGGATAGCCTCACTTAAGGCTGAGCTCG
CGGAGAGCGAGCACCACGTGGTCGGCCTCAACAACGAGAGCGAGGACTTT
ATGCGGGCCAAAAACGCGTACTCGCGAAAGGCAGAGCTTCTGCAGCATAT
CGTGGAGCAGCAGCGGGCACGGCTGGAGCAGATATCGGCAGACTTGCAAC
GAACGTCGAAGGAGGCAAGCTGCCGTATTAATTGAAGAGCGAGGACTTTA
TGCGGGCCAAAAACGCGTACTCGCGAAAGGCAGAGCTTCTGCAGCATATC
GTGGAGCAGCAGCGGGCACGGCTGGAGCAGATATCGGCAGACTTGCAACG
AACGTCGAAGGAGGCAAGCTGCCGTATTAATTGA
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