mRNA_C-linearis_contig82.16035.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig82.16035.1 vs. uniprot
Match: A0A6H5KNY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY7_9PHAE) HSP 1 Score: 676 bits (1744), Expect = 7.570e-228 Identity = 425/803 (52.93%), Postives = 525/803 (65.38%), Query Frame = 1
Query: 568 LRAQHGVLVDDLERCDH-DAAEGDGAGEEGLRERTLLTAACWQLRDNDGSSEAAAATEDARRDGDAALELAAVAVAADLTAVRSSGLAQKIQDALEWEGQARPLEDKLVASASRVRWMYVLRLAVELGQCDQSKWERLQQLLAEPPKSVDLKGLYSTREDVNALF---RASNGDPLHGGIFSRLTESRGELTRMVEGGQARLAKLNALLRVLWDESTAGAANASPVERAGALNDLIGVVIGETQLRPKLALRLLSALGNDAVGRARSGAEGVSSVLARDVANLRLMSKGVVDKRSQRAAVAATELCAVLRITEALAKRIEESLPAELAQRGAALQGELRARIKAYAETDRHRREADVLVAAEDFVAELPPEPSEHGPGNSHLDLMAYLLGAVTGGRRKGLDNLFKPGATTEILCGEVSTSPPSGETAPAQGEVLGAARAGLTKAEKQPPKRATDRSADHPEKQSGHQVDGRATLADIFTKISSAMPCDPDHSLAGIWGVAKARLKIAR---PRGNEEVETEAFELAVDAQVFEALQKSLHETLEAPSRPALGDLPPASAGQTSALKVVGRIRLGGHAPPSGSEVNVGDESKTLQRQAEAMQFKNKMNVVARTGLPLQSPGQGENVSSVGALVVAAKLAKRWKSAALDDGSGLDRRELERLNFLMDKRIENLSAQLAKLEQSSHAEKSMAKIMTTRVSAEEAKLSPESWATREVQRLNARIRVHREQLHGVEIRLKCFRKG-KGGMGDMEALWMSPAEREEMEANLRLILRKIAKANFLLRTMRSRWDLFRQKHRHLVPLVQDR 2952
LRAQH VLV+DL+R + D E D LR+ +LLTAACWQLRDN GSS+A + AALELAA VAA LT+ SS L++++ D L WEGQA PLE KLV ASRVRWMY++RLAVELG CD ++WE LLAEP K +DL+ L+ TR+ ++ALF R +G L GG+F R TESRGEL ++E G +RLA+ N LLR +W ES AG S ER ALN L+GV++GE+QL P AL+L SALG D + RA+S + V L ++ANL L S GV+ + SQRAA+A T+L A++RI+E L+K +E L +LAQRGAALQ ELR ++KAYAE + +R +VL AAEDF+AE+PPE +EHGPGNS LD+M +LLGA+ T PSG+ A AQ V AA G + +Q TDR P KQ H++D R L +IF KI+SAMPCDPD +A W +A +AR PRG+EEVE EAFELAVDAQ E L++SL ++ P R L DLP + G+ + G IRL P SG EV DE K LQRQAEA+++KN MN+VARTGL LQ P + S+ A+V AAK AKRWKSAA DD SGL R ELERLN +MD RI +LS QLA L +S E AK T+ E LSP+ W RE QRLN RIR+ +E+LHG+E RL+ RKG KG GD+EA+WMS ER EME NL LI RKIAKANFLLR MRSRWD+FR++HRHL PLV DR
Sbjct: 2 LRAQHCVLVEDLQRSESADVGEDDDP----LRQASLLTAACWQLRDN-GSSDAGN-----EQGTTAALELAAAVVAAGLTSA-SSDLSRRMMDTLRWEGQAPPLEGKLVGIASRVRWMYLVRLAVELGLCDLNEWEEALHLLAEPKKPIDLESLHETRQGIHALFHGFRGGDGPLLLGGVFPRSTESRGELVSLIERGHSRLARFNVLLRAIWSES-AGTGRGSFEERTEALNTLVGVMLGESQLHPSFALKLFSALGLDVIRRAKSSPDKVPQSLQGEIANLGLSSGGVLSEASQRAALAVTKLAALVRISEVLSKSRDE-LSLDLAQRGAALQAELRVQVKAYAEHQQSQRREEVLSAAEDFIAEMPPEEAEHGPGNSQLDIMTHLLGAII-------------------------TGTPSGKEARAQSGVPDAAMVGSNHSSEQALASPTDRRTPDPMKQDRHRLDARGNLLEIFAKIASAMPCDPDQYVASAWRTMQASRTLARMERPRGDEEVELEAFELAVDAQALETLRESLLGAIDRPER-NLCDLPVSVNGEIE-QPLSGGIRLI-TVPLSGLEVTHDDEMKALQRQAEAVRYKNAMNIVARTGLALQPPAEA-GTPSLTAIVAAAKHAKRWKSAAQDDVSGLGRPELERLNSIMDMRITSLSDQLATLVRSKKVEPGTAK--QTKAD-HEVVLSPDDWVKRERQRLNVRIRIRKEKLHGMETRLRHIRKGDKGRTGDVEAIWMSEDERLEMETNLFLISRKIAKANFLLRKMRSRWDIFRERHRHLAPLVHDR 759
BLAST of mRNA_C-linearis_contig82.16035.1 vs. uniprot
Match: D7FJK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK7_ECTSI) HSP 1 Score: 440 bits (1131), Expect = 1.930e-139 Identity = 311/666 (46.70%), Postives = 379/666 (56.91%), Query Frame = 1
Query: 691 QLRDNDGSSEAAAATEDARRDGDAALELAAVAVAADLTAVRSSGLAQKIQDALEWEGQARPLEDKLVASASRVRWMYVLRLAVELGQCDQSKWERLQQLLAEPPKSVDLKGLYSTREDVNALF---RASNGDPLHGGIFSRLTESRGELTRMVEGGQARLAKLNALLRVLWDESTAGAANASPVERAGALNDLIGVVIGETQLRPKLALRLLSALGNDAVGRARSGAEGVSSVLARDVANLRLMSKGVVDKRSQRAAVAATELCAVLRITEALAKRIEESLPAELAQRGAALQGELRARIKAYAETDRHRREADVLVAAEDFVAELPPEPSEHGPGNSHLDLMAYLLGAVTGGRRKGLDNLFKPGATTEILCGEVSTSPPSGETAPAQGEVLGAARAGLTKAEKQPPKRATDRSADHPEKQSGHQVDGRATLADIFTKISSAMPCDPDHSLAGIWGVAKARLKIARPRGNEEVETEAFELAVDAQVFEALQKSLHETLEAPSRPALGDLPPASAGQTSALKVVGRIRLGGHAPPSGSEVNVGDESKTLQRQAEAMQFKNKMNVVARTGLPLQSPGQGENVSSVGALVVAAKLAKRWKSAALDDGSGLDRRELERLNFLMDKRIENLSAQLAKLEQSSHAEKSMAKIMTTRVSAEEAKLSPESWATR 2679
+LRDN GSS+A A AALELAA +AA LT+ SS L++++ D L WEGQA PLEDKLV ASRVRWMY++RLAVELG CD S+W+ + LLAEP K +DL LY TR+ ++ALF R +G L G+F R TESRGEL ++E GQARLAKLN LLR LW ES AG S +R ALN L+GV++GE+QL P AL+L SALG D + RA+SG + V L D+ANL L S GV+ + SQRAA+A T+L A+ RI+EAL+K +E L ++AQRGAALQ ELR QG V AA G + +Q TDR P KQ H++D R L +IF KI+SAMPCDPD +A W +AR I RPRG+EEVE EAFELA+DAQ E L++SL E + P R L DLP S + + G IRL AP SGSEV DE K LQRQAEA+++KN MN+VARTGL L SP G S+ A V AAK AKRW+SAA DDGSGL R ELERLN +M+ RI NLS QLA L +S + E AK T+ E LSP+ W R
Sbjct: 18 KLRDN-GSSDAGNEQGTA-----AALELAAAVIAAGLTS-GSSDLSRRMMDTLRWEGQAPPLEDKLVGIASRVRWMYLVRLAVELGLCDLSEWQEVSNLLAEPKKPIDLGSLYETRQGIHALFHGFRGGDGPLLLDGVFPRSTESRGELVSLIERGQARLAKLNVLLRALWSES-AGTGRGSFEDRTEALNTLVGVMVGESQLHPNFALKLFSALGLDVIRRAKSGPDKVPQSLQGDIANLGLSSGGVLSEASQRAALAVTKLAALARISEALSKSRDE-LSLDVAQRGAALQAELRV-----------------------------------------------------------------------------------------QGGVPDAAMVGSNHSSEQALASPTDRRTPDPMKQDRHRLDARGNLLEIFAKIASAMPCDPDQDVASAWRTMQAR--IERPRGDEEVELEAFELAMDAQALETLRESLLEAIHRPER-NLFDLP-VSVNEEIEQPLSGGIRLI-TAPLSGSEVTHDDEKKALQRQAEAVRYKNAMNIVARTGLALPSPA-GVGTPSLTAFVAAAKHAKRWRSAAQDDGSGLGRPELERLNSIMEMRITNLSDQLATLVRSKNVEPGTAK--QTKAD-HEVVLSPDDWVKR 576 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig82.16035.1 >prot_C-linearis_contig82.16035.1 ID=prot_C-linearis_contig82.16035.1|Name=mRNA_C-linearis_contig82.16035.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=985bp AGSLDDSLQTITKLESAVEGCGKDAIPFKEQNERRENLQALVREEARRNRback to top mRNA from alignment at C-linearis_contig82:845893..853528- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig82.16035.1 ID=mRNA_C-linearis_contig82.16035.1|Name=mRNA_C-linearis_contig82.16035.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7636bp|location=Sequence derived from alignment at C-linearis_contig82:845893..853528- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig82:845893..853528- >mRNA_C-linearis_contig82.16035.1 ID=mRNA_C-linearis_contig82.16035.1|Name=mRNA_C-linearis_contig82.16035.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5910bp|location=Sequence derived from alignment at C-linearis_contig82:845893..853528- (Chordaria linearis ClinC8C monoicous)back to top |