mRNA_C-linearis_contig82.16029.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.16029.1
Unique NamemRNA_C-linearis_contig82.16029.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig82.16029.1 vs. uniprot
Match: D7FIJ0_ECTSI (Dynactin 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ0_ECTSI)

HSP 1 Score: 316 bits (810), Expect = 4.240e-104
Identity = 153/183 (83.61%), Postives = 162/183 (88.52%), Query Frame = 1 
Query:   79 MEASAEEEYVKTSTGDFVFKKAHVHGSQNLYLKGKSIIMPGAIIRGELQAIRIGRYCFIGEDTVIRPAYRQAIEQEGSNLKCRFTPLSVGNHTYIGKNCVVESAGIGCTVRIEDGCVLGRNSFVRDNCHLLAGTVLPEGAVVPPFTVLQGCPAKMVSILHESTASVWAEDAVSLYETFEPSRV 627
            M  SA+EEYVKT  GD VFKKAHVHG  NL+L G+SIIMPG IIRGELQ IRIGRYC +GE TVIRPAYR  IEQE SNLKCRFTPLSVG+HTYIGK+CVVESAGIGC VRIEDGCVLGRNSFVRDNCHLL GTVLPEGAVVPPFTVLQGCPA+MVS+LHEST SVW EDAV+ YETFEPS V
Sbjct:    1 MAGSAQEEYVKTRDGDIVFKKAHVHGLHNLFLMGRSIIMPGVIIRGELQEIRIGRYCVVGEGTVIRPAYR--IEQEESNLKCRFTPLSVGSHTYIGKSCVVESAGIGCNVRIEDGCVLGRNSFVRDNCHLLPGTVLPEGAVVPPFTVLQGCPARMVSVLHESTPSVWTEDAVNFYETFEPSAV 181
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BLAST of mRNA_C-linearis_contig82.16029.1 vs. uniprot
Match: A0A7S1ZJQ9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJQ9_TRICV)

HSP 1 Score: 158 bits (400), Expect = 1.390e-42
Identity = 76/179 (42.46%), Postives = 121/179 (67.60%), Query Frame = 1 
Query:   91 AEEEYVKTSTGDFVFKKAHVHGSQNLYLKGKSIIMPGAIIRGELQA-IRIGRYCFIGEDTVIRPAYRQAIEQEGSNLKCRFTPLSVGNHTYIGKNCVVESAGIGCTVRIEDGCVLGRNSFVRDNCHLLAGTVLPEGAVVPPFTVLQGCPAKMVSILHESTASVWAEDAVSLYETFEPSR 624
            AEE Y+KT+  ++V + A +HGS+++ ++GKS++ PGA++RG+L A +R+GRYC +G+ +V+RP    A   +G+    R  P S+GNHT IG++CVVE+A +G +V + DGCVLG+ S ++D C +  GTVL   AVVPPF+++ G P ++V  + ES A+   + ++  Y  F   R
Sbjct:   17 AEEGYIKTAANNYVSRSASIHGSRHVEIRGKSVVRPGAVVRGDLGAPVRVGRYCRVGDRSVLRPP--SASLPDGTE---RRLPQSIGNHTSIGRDCVVEAAAVGFSVLVGDGCVLGKRSVIKDCCRIEPGTVLAPDAVVPPFSIVSGSPGRVVGEMPESAAAEIPDRSLGEYAAFVKER 190
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BLAST of mRNA_C-linearis_contig82.16029.1 vs. uniprot
Match: A0A7S3QBQ9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QBQ9_9STRA)

HSP 1 Score: 157 bits (397), Expect = 1.160e-41
Identity = 76/190 (40.00%), Postives = 115/190 (60.53%), Query Frame = 1 
Query:   85 ASAEEEYVKTSTGDFVFKKAHVHGSQNLYLKGKSIIMPGAIIRGELQAIRIGRYCFIGEDTVIRPAYRQAI------------EQEGSNLKCRFTPLSVGNHTYIGKNCVVESAGIGCTVRIEDGCVLGRNSFVRDNCHLLAGTVLPEGAVVPPFTVLQGCPAKMVS--ILHESTASVWAEDAVSLYETF 612
            A  EE YVKT+  ++V +KA +HG++N+ +KGKSI+ P   IRG+ Q +RIGRYC IGE +++RP   QA             E E      +F PL VG+HT IGK CV+E+A +G +V I D CV+ +   ++D C++ +GTV+ +  V+PPF+ + GCP  M+   ++ ES  +   +D V  +  F
Sbjct:   41 APEEEGYVKTAAYNYVSRKAFIHGAKNVEMKGKSIVHPKVHIRGDFQTVRIGRYCHIGEGSILRPPSYQASLDTSHEGASENGENEEEKQLIKFLPLIVGSHTQIGKGCVIEAAAVGSSVYIGDNCVISKRVIIKDCCYIASGTVIAQDTVIPPFSRVAGCPGGMIENGLMAESITTTSVDDCVEQFNEF 230
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BLAST of mRNA_C-linearis_contig82.16029.1 vs. uniprot
Match: A0A0L0DIQ2_THETB (Dynactin subunit 5 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DIQ2_THETB)

HSP 1 Score: 150 bits (378), Expect = 1.410e-39
Identity = 73/178 (41.01%), Postives = 119/178 (66.85%), Query Frame = 1 
Query:   97 EEYVKTSTGDFVFKKAHVHGSQNLYLKGKSIIMPGAIIRGELQAIRIGRYCFIGEDTVIRPAYRQAIEQEGSNLKCRFTPLSVGNHTYIGKNCVVESAGIGCTVRIEDGCVLGRNSFVRDNCHLLAGTVLPEGAVVPPFTVLQGCPAKMVSILHESTASVWAEDAVSLYETFEPSRVS 630
            EE+++T++G+ V + + + GSQN+ L GKS+++PG+IIRG+L A+RIGRYC I +  V+RPAY+     +G N    +  LS+G+  Y+GK+ VVE+A IG  V I +G ++ + + + D C +L G V+PE AV+PPF++  G PA ++  L E+   V  E A + YE++ P++ +
Sbjct:    9 EEWIETASGNKVSRASVLCGSQNIILNGKSLVLPGSIIRGDLAAVRIGRYCVISDRVVLRPAYKAL--PKGLN----YFQLSLGDCVYVGKDAVVEAASIGSHVIIGEGAIVSKRAVILDCCEILPGAVVPEDAVIPPFSIYGGNPAVLIGELTEAAQRVHEEKAFACYESYVPAKAA 180
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BLAST of mRNA_C-linearis_contig82.16029.1 vs. uniprot
Match: A0A0N4UAM7_DRAME (Uncharacterized protein n=1 Tax=Dracunculus medinensis TaxID=318479 RepID=A0A0N4UAM7_DRAME)

HSP 1 Score: 142 bits (357), Expect = 1.850e-36
Identity = 65/172 (37.79%), Postives = 109/172 (63.37%), Query Frame = 1 
Query:   97 EEYVKTSTGDFVFKKAHVHGSQNLYLKGKSIIMPGAIIRGELQAIRIGRYCFIGEDTVIRPAYRQAIEQEGSNLKCRFTPLSVGNHTYIGKNCVVESAGIGCTVRIEDGCVLGRNSFVRDNCHLLAGTVLPEGAVVPPFTVLQGCPAKMVSILHESTASVWAEDAVSLYETF 612
            +E+V+T+TG+ V KK+ + GSQN+ L GKSI+M   I+RG++ +IR G+YC +GE TVIRP+Y++       +    F P+ +G+H +I  +C++ +A IG  V I  G ++GR+  ++D   +L    +P  AV+PPF+++ G P  ++  L EST ++  +   S Y+ F
Sbjct:   11 QEFVETATGNKVNKKSRLFGSQNIVLNGKSILMKDCILRGDMNSIRAGKYCVVGERTVIRPSYKRF------SKGLTFFPVHIGDHVFIENDCIIMAAQIGAFVHIGSGAIVGRSVIIKDCVQVLPNAFVPHDAVIPPFSIVSGNPGTIIGELPESTQNLMTQATRSFYDNF 176
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BLAST of mRNA_C-linearis_contig82.16029.1 vs. uniprot
Match: A0A7S2V2Q0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2Q0_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.870e-36
Identity = 70/173 (40.46%), Postives = 110/173 (63.58%), Query Frame = 1 
Query:   97 EEYVKTSTGDFVFKKAHVHGSQNLYLKGKSIIMPGAIIRGELQAIRIGRYCFIGEDTVIRPAYRQAIEQEGSNLKCRFTPLSVGNHTYIGKNCVVESAGIGCTVRIEDGCVLGRNSFVRDNCHLLAGTVLPEGAVVPPFTVLQGCPAKMVSILHESTASVWAEDAVSLYETFE 615
            EE+++T+T + V KK  +     + + GK+I+M G IIRG+L  + +GRYC +G +T+IRPA +  I +E +     F  + +G++T IG++C++E+A IG  V+     VLG+ S VRD C L  GTVL  GAVVPPF+V+ GCP ++ S L E++   ++  A   Y+ F+
Sbjct:   10 EEFIRTTTNNLVSKKVRISSPNFVKITGKTILMHGVIIRGDLAKVEMGRYCEVGANTIIRPALK--ISEEPT-----FADVKIGDNTRIGEDCIIEAAWIGTNVQXXXXXVLGKGSLVRDCCRLEDGTVLAPGAVVPPFSVVAGCPGRVTSELPENSPEEFSHAAQDSYKKFK 175
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BLAST of mRNA_C-linearis_contig82.16029.1 vs. uniprot
Match: A0A3S1H5M8_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1H5M8_ELYCH)

HSP 1 Score: 140 bits (353), Expect = 6.260e-36
Identity = 67/173 (38.73%), Postives = 107/173 (61.85%), Query Frame = 1 
Query:  100 EYVKTSTGDFVFKKAHVHGSQNLYLKGKSIIMPGAIIRGELQAIRIGRYCFIGEDTVIRPAYRQAIEQEGSNLKCRFTPLSVGNHTYIGKNCVVESAGIGCTVRIEDGCVLGRNSFVRDNCHLLAGTVLPEGAVVPPFTVLQGCPAKMVSILHESTASVWAEDAVSLYETFEP 618
            +Y++T++G+ V +++ + GSQN+ + GK+I+M G +IRG+L  +RIGR+C I  + VIRPA+++       +    F PL +G+H  I +N VV +A +G  V I   CV+GR + ++D C +   T+LP  AVVPPFT+  G P K+ S L + T  +  +  V+ Y  F P
Sbjct:   12 QYIETASGNKVSRQSVLCGSQNIVINGKTIVMTGCVIRGDLANVRIGRHCIISNNAVIRPAFKRF------SKGVAFFPLHIGDHVLIEENSVVNAAQVGSFVHIGKNCVIGRRAVLKDCCAIADNTILPPEAVVPPFTLCSGSPGKLTSELPDCTQDLMTDITVNYYHHFRP 178
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BLAST of mRNA_C-linearis_contig82.16029.1 vs. uniprot
Match: L8GIW5_ACACA (Dynactin 4 isoform 2, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GIW5_ACACA)

HSP 1 Score: 137 bits (346), Expect = 1.180e-34
Identity = 72/180 (40.00%), Postives = 113/180 (62.78%), Query Frame = 1 
Query:  100 EYVKTSTGDFVFKKAHVHGSQNLYLKGKSIIMPGAIIRGELQAIRIGRYCFIGEDTVIRPAYRQAIEQEGSNLKCRFTPLSVGNHTYIGKNCVVESAGIGCTVRIEDGCVLGRNSFVRDNCHLLAGTVLPEGAVVPPFTVLQGCPAKMVSILHESTASVWAEDAVSLYETFEPSRVSLAA 639
            E+++T TG+ V +K+ + GSQN+ L GK+++MPGA+IRG+L A+ +G+Y  IG + VIRPA+++    +GS     F P+++G+  +I ++C+V +  IG  V +  G VLGR+S ++D C +  G+VL  G VVPPFT+  G PA     L E    +  E ++  Y TF P    +AA
Sbjct:   16 EFIETHTGNKVGRKSILCGSQNIRLHGKTVVMPGAMIRGDLGAVNVGKYSVIGRNVVIRPAHKR---YQGS---VAFFPVTIGDFVHIEEDCIVSATSIGSYVHVGRGAVLGRHSVLKDCCWVEEGSVLAPGTVVPPFTIFGGSPAVQKGQLPECFQEMQKEASLINYNTFLPQPDVVAA 189
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BLAST of mRNA_C-linearis_contig82.16029.1 vs. uniprot
Match: H3EIY2_PRIPA (Dnc-5 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=H3EIY2_PRIPA)

HSP 1 Score: 135 bits (339), Expect = 6.430e-34
Identity = 64/172 (37.21%), Postives = 113/172 (65.70%), Query Frame = 1 
Query:   97 EEYVKTSTGDFVFKKAHVHGSQNLYLKGKSIIMPGAIIRGELQAIRIGRYCFIGEDTVIRPAYRQAIEQEGSNLKCRFTPLSVGNHTYIGKNCVVESAGIGCTVRIEDGCVLGRNSFVRDNCHLLAGTVLPEGAVVPPFTVLQGCPAKMVSILHESTASVWAEDAVSLYETF 612
            +EY +T++G+ +FK A + GSQN+ + GKSI+M   ++RG+L  IR+G++CFIGE T+IR ++R+    +G+ +     P+ VG+   + ++CV+ +A IG    I  G ++GR+S +++ C + AG V+P  +  PPF+V+ G PA++V  + E T  + ++ A  LYE++
Sbjct:   13 DEYTQTNSGNKIFKNASIFGSQNIIIHGKSILMRDCMLRGDLTGIRMGKFCFIGERTLIRASHRKF--SKGATM----FPMHVGDCVIVEEDCVLVAAQIGSYTHIGKGAIVGRSSIIKECCKVEAGAVIPSDSTFPPFSVIAGNPARVVGRVPECTQELISQAAKELYESY 178
[Close]
BLAST of mRNA_C-linearis_contig82.16029.1 vs. uniprot
Match: A0A0N4UWP5_ENTVE (Uncharacterized protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4UWP5_ENTVE)

HSP 1 Score: 135 bits (339), Expect = 6.810e-34
Identity = 67/173 (38.73%), Postives = 109/173 (63.01%), Query Frame = 1 
Query:  106 VKTSTGDFVFKKA-HVHGSQNLYLKGKSIIMPGAIIRGELQAIRIGRYCFIGEDTVIRPAYRQAIEQEGSNLKCRFTPLSVGNHTYIGKNCVVESAGIGCTVRIEDGCVLGRNSFVRDNCHLLAGTVLPEGAVVPPFTVLQGCPAKMVSILHESTASVWAEDAVSLYETFEPS 621
            V+T+TG+ V ++  H+ GS N+ L GKSIIM G I+RG+L ++RIG+YC IGE ++IRP+++        +    + P+ +G++ +I  +CVV +A IG  V I    ++GR++ ++D   +L   V+P+ AV+PPF+++ G PA +V  L  ST  +  +   S YE F PS
Sbjct:   14 VETATGNKVSRRGTHLFGSTNIVLSGKSIIMDGCILRGDLNSVRIGKYCVIGERSIIRPSFK------AFSKGLTYFPVHIGDYVFIENDCVVMAAQIGSFVHIGSNAIIGRSTVLKDCVQILPDAVIPQDAVIPPFSIVGGNPAVIVGELPPSTQDLMMQANKSFYENFVPS 180
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIJ0_ECTSI4.240e-10483.61Dynactin 4 n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A7S1ZJQ9_TRICV1.390e-4242.46Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3QBQ9_9STRA1.160e-4140.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A0L0DIQ2_THETB1.410e-3941.01Dynactin subunit 5 n=1 Tax=Thecamonas trahens ATCC... [more]
A0A0N4UAM7_DRAME1.850e-3637.79Uncharacterized protein n=1 Tax=Dracunculus medine... [more]
A0A7S2V2Q0_9STRA3.870e-3640.46Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A3S1H5M8_ELYCH6.260e-3638.73Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
L8GIW5_ACACA1.180e-3440.00Dynactin 4 isoform 2, putative n=1 Tax=Acanthamoeb... [more]
H3EIY2_PRIPA6.430e-3437.21Dnc-5 n=2 Tax=Pristionchus pacificus TaxID=54126 R... [more]
A0A0N4UWP5_ENTVE6.810e-3438.73Uncharacterized protein n=1 Tax=Enterobius vermicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:766745..770514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score317.8
Seed ortholog evalue3.5e-84
Seed eggNOG ortholog2880.D7FIJ0
Preferred nameDCTN5
KEGG koko:K10427
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001568,GO:0001944,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003205,GO:0003231,GO:0003279,GO:0003281,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005869,GO:0005875,GO:0005886,GO:0006810,GO:0006888,GO:0006928,GO:0007017,GO:0007018,GO:0007275,GO:0007276,GO:0007283,GO:0007507,GO:0008088,GO:0008090,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0015629,GO:0015630,GO:0016020,GO:0016192,GO:0019882,GO:0019884,GO:0019886,GO:0019953,GO:0022414,GO:0030705,GO:0031090,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0035904,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046907,GO:0048002,GO:0048193,GO:0048232,GO:0048513,GO:0048609,GO:0048731,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0060840,GO:0060976,GO:0070013,GO:0071944,GO:0072358,GO:0072359,GO:0098930,GO:0099111
EggNOG free text desc.aorta development
EggNOG OGsKOG3121@1,KOG3121@2759
Ec32 ortholog descriptionTrimeric LpxA-like
Ec32 orthologEc-28_000450.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Exons5
Model size1365
Cds size570
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930618.3259952-UTR-C-linearis_contig82:766744..7674611622930618.3259952-UTR-C-linearis_contig82:766744..767461Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 766745..767461 -
1690881162.240563-UTR-C-linearis_contig82:766744..7674611690881162.240563-UTR-C-linearis_contig82:766744..767461Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 766745..767461 -
1622930618.4204526-UTR-C-linearis_contig82:770436..7705141622930618.4204526-UTR-C-linearis_contig82:770436..770514Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 770437..770514 -
1690881162.321073-UTR-C-linearis_contig82:770436..7705141690881162.321073-UTR-C-linearis_contig82:770436..770514Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 770437..770514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930618.342548-CDS-C-linearis_contig82:767461..7675901622930618.342548-CDS-C-linearis_contig82:767461..767590Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 767462..767590 -
1690881162.2710845-CDS-C-linearis_contig82:767461..7675901690881162.2710845-CDS-C-linearis_contig82:767461..767590Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 767462..767590 -
1622930618.3595474-CDS-C-linearis_contig82:768206..7682931622930618.3595474-CDS-C-linearis_contig82:768206..768293Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 768207..768293 -
1690881162.2806792-CDS-C-linearis_contig82:768206..7682931690881162.2806792-CDS-C-linearis_contig82:768206..768293Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 768207..768293 -
1622930618.3787365-CDS-C-linearis_contig82:768617..7687561622930618.3787365-CDS-C-linearis_contig82:768617..768756Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 768618..768756 -
1690881162.2895546-CDS-C-linearis_contig82:768617..7687561690881162.2895546-CDS-C-linearis_contig82:768617..768756Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 768618..768756 -
1622930618.3976407-CDS-C-linearis_contig82:769233..7693431622930618.3976407-CDS-C-linearis_contig82:769233..769343Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 769234..769343 -
1690881162.2999823-CDS-C-linearis_contig82:769233..7693431690881162.2999823-CDS-C-linearis_contig82:769233..769343Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 769234..769343 -
1622930618.4092193-CDS-C-linearis_contig82:770331..7704361622930618.4092193-CDS-C-linearis_contig82:770331..770436Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 770332..770436 -
1690881162.3104222-CDS-C-linearis_contig82:770331..7704361690881162.3104222-CDS-C-linearis_contig82:770331..770436Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 770332..770436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16029.1prot_C-linearis_contig82.16029.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 767462..770436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.16029.1

>prot_C-linearis_contig82.16029.1 ID=prot_C-linearis_contig82.16029.1|Name=mRNA_C-linearis_contig82.16029.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=190bp
MEASAEEEYVKTSTGDFVFKKAHVHGSQNLYLKGKSIIMPGAIIRGELQA
IRIGRYCFIGEDTVIRPAYRQAIEQEGSNLKCRFTPLSVGNHTYIGKNCV
VESAGIGCTVRIEDGCVLGRNSFVRDNCHLLAGTVLPEGAVVPPFTVLQG
CPAKMVSILHESTASVWAEDAVSLYETFEPSRVSLAANV*
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mRNA from alignment at C-linearis_contig82:766745..770514-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.16029.1 ID=mRNA_C-linearis_contig82.16029.1|Name=mRNA_C-linearis_contig82.16029.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3770bp|location=Sequence derived from alignment at C-linearis_contig82:766745..770514- (Chordaria linearis ClinC8C monoicous)
TCTCGTGGCCCATCTTGGATCAATCACAAGGGTTAGCACAAAGGGACAGG
GACAACGAGAGAGAGAGACGAGGGGAGGATGGAAGCTTCGGCAGAGGAAG
AATACGTGAAGACCAGCACCGGGGATTTCGTCTTCAAGAAAGCTCACGTC
CACGGCTCGCAAAATCTGTATCTCAAGGGCAAGGTATTTTGTTGTTGTTG
TTGTTGTTGTCTTCACATTTTGAACCATCCCGGTATTTTGTACTTCCATA
AAAGTGGGTAACGAATCATCATCAACCACGACCCTTTTGTTCCGATGATT
TGATGATTTGTGATTTGTTGATCGATGTTCTCGCCTTCCTCTGTTCTCTG
TGGTACTATTTTTTACTCGGGTACGTACATGTTCGGTGGTTCATTTAAAC
AAACACCCGCCGCGTTCCATCGTCGTGGAAGTAGATGGACTGTCACATGT
ACTGCTGTCGATGGGGTTTATTTCCGATGTTCTGTTGTTGTTTTTAAACC
TTGCAGCATCGCACAGATAGATGCGAAGCAGGGAACCGATACCATGCAGT
GGCGCTCAACGAAAATACTGAAAATGCGAAGCTGGATGGGAACATAATCG
GTGATCGTATTGAAAGACCCTACAGATAGTAGTCTATTTTTTTTCTCCCG
AGATCGGAGTCCACCGAAACCGCTTGCCGATAGGACATCATGGGTACGCC
GAGCATTTCCACAAGTAGTGCGCCGCGCTCAACAACGTCAAAGCTTCCCT
ACAACGCATCTCTAAGATGACAGCACAATAACAGTACGGTGTGATATCAA
CTGCCGAAAGAATGAACACTTGAGTCGTAGGCACGAGTCGTTTTGGAAAG
CATGACCAGGCTAGCGTGTACCTGGTACTCCGTATAAGGAAACGTGCGCT
GAGAACAGAGAAAGCTATCCTATATCCTACCGTTTGGCGGTCGGCAGCTG
CCGAAAATGGCTGTACTTCCAGCAAGGCTCCTGAAAGGGTCCGTTGCCGC
TTGTTTTGGACTCTCTCAGTCGTCCTCAGTCGCTCAGTCGTCCTCAGTTG
TGACTACAGCAGGACCTCGATTGAAGAGAACGCGCATCGGTCAAATGGTA
CGCACGAATTGCCGTCGTTTGCCGGACTCAGTGATGATTGCCCCTACTGT
CCCGGTTCTGCCACACGCCAGAGTATCATCATGCCTGGCGCAATTATCCG
CGGAGAGCTACAGGCGATCCGAATAGGTCGGTATTGCTTCATCGGCGAGG
ACACCGTCATTAGACCAGCTTACAGGCAAGCGTGCATGGTTGCTTGGCAG
TTTGTGCGTAGCCTCGGCAGGGTTGACTGCTGTTTTCAGTACCGGCGGCA
ACTAGTTGTTCGTTTGGATGCGAGGAGAGACAGAGATCTCGCCGACCCGC
GGTTCACATCGACAGATCAAGTGCAACACATTCAAGCGCCAAGCTTCGTG
TCGGGCGAGAATTGCATGGTTTTCAACGCGAGCGCTCGGTAGTCCTGCCC
TTTGCGCACCTATAAGCAAGCTGGGAACTGGCGGTGAGCCTCGTAGCGTG
CTGCGCGGTGTGCTTTTTCCCGTATGTAGCTCGATGTTGTCCGCCTCCGG
GTTTTCCTTCTCAGAGAAGCGGTGCTTTTTCCCCTAGCCCTGTTATGCGA
GGTCGCTCGGTCGGGTGGGTACGTCGCCACGCCCTTGTGGTGTCCCGCCT
GCCAGATTTCATCAACGCCTCCTGCTTTACACCTACCTACATATGTACCT
GCACCCAGAATCGAGCAAGAGGGGTCAAATCTCAAGTGCCGCTTTACGCC
GCTGTCGGTGGGCAACCACACGTACATCGGCAAGAATTGTGTCGTAGAAT
CTGCCGGCATCGGGTGCACCGTGCGGATCGAGGACGGATGCGTGTTGGTG
AGGCTTGGGACTAAAATTGAGATTAGACACCAGGCTCCTGCTGTCTGTAG
ACTTGTTCCGTCATCACGGGCGTGCTTGTTGGACAGGATGCGATGTTCCT
GCAGTGTGTTGCCCTATAAAGGGTACGCCACGCACGCGCCCCATGTCGTG
CTTTTTCAGCTCGGAGAGTTACAGCTATTCGAAGGATGTCCTGGGGCTTT
TATGCATGTTGTGAGGTAAAAGGGGTAGACGAGGTGGACTAGGCGCGCCC
CCCCCTTTTTCTTTAGCAGAAGCCACCGCAACACAGGGCCATGTGTATAA
ATTGATTCTCGCTATTGACAGGGGCGGAACAGCTTCGTGCGGGACAATTG
CCACTTGTTAGCGGGGACTGTCCTTCCGGAAGGAGCCGTGGTTCCTCCAT
TTACTGTGGTGAGTTGAGACAAAATGGAATTCATGTTGGCTGGGCGTGTG
TGTGTGTTTGCTTGCCTGTAGACCCAAACGAGCACAGCAGATGAACGACA
AACTTGACCTCGCCGCTCAGTATTGCAACGAAGAGCTCGAGAGGCCAGGC
ATTGTTGTTGTCTTGGGCATCCTTCACACCACTGGAGAGGCCAAAGATTG
CTTCTCTCCCGCACTAACGTGTATTTTCGCGCAAGCAGAGGGTTGCCCCG
AGCGCACTCCCGGCCAAGCGAAGTTTGACGACTAAATTACGGAATTTTCC
GGATTTTTGGAACTGGACGCTTGTGCTGTCCTCTGAGGTAGCGAGCCCGA
ACATGCGCTTCGGCGTTGCTCGCGGGGCCTTATCGCTTGTTGACGAGTCT
AAAAAGTGTTTCAGAGGACCTGTGACTTTTTGCCACGCGATCCATTCACT
GCACTGCCCGCTTTCCGAGACCACTCACACGAGGCATCCCAGCAGCAACA
CCGCGTATCCCCGGACCCAACGCACGAGCCACGAATGTCTGTAAGCTTGC
TGATAGGGATCTTCATCCTCGCCCGCTATCGCTTGCCTTCCTCCCTTTTG
GCCCCCTGCACGCGGCCGGTGTAGCTTCAAGGGTGCCCCGCGAAGATGGT
TTCGATACTGCACGAGAGCACGGCGTCCGTGTGGGCGGAGGATGCCGTGA
GCTTGTACGAAACGTTCGAGCCGAGCAGGGTTAGCTTGGCGGCAAATGTG
TGACAGATCCAGCCAGCATGACAGCCAGACGCACGCGCGAGATTGTCGCG
CCGAAACTGGACGGAGCGTCTTCGCTGGAAGGCTTGCTTGCCTGTCCTCC
TACGGCTGTCTGCCGTCATCTGGGCCCTATTTTCTGAAAGTCTGTTCGTT
GGAGCTGGCTGCAAGTTACGCGGCGTCGCGTGGGAGACCTCGTCTGAGTT
GTCGCTTTCCCCTGCGATTGCCATGGTCAGATTCCACGCTAATTTGTTTT
CCTCCCTCATGTTGCTGTCTATTCTCGTCGTCACTTTGAGTGCATTTACT
CCCGCCAAGTCGAAGGTTCTGTAAATTTAAATTTACCCCGCCATCGTAGG
CTAGGAAGGGTCTAGCAGGTCTAGCGAGGCTTGCCAGTGTTGGGTAACGT
AAGAGCAATCTCGAGGGGGTGAGCAGCTTGGGCCCCCGTCTCGAGGCGAG
GAACCTTCATCCTTTGCAGGGATGGTGAGGTCTGCCTCGGATGAACGTCT
GTGGGACGTCGGCTTGCGACGAGGACTCCGTCTGGCTTCCCCGCTCTTCG
CGTGTGTTGGCTTGTATGAGAAGATGGTGCACCTGTCGCACACGCGACGA
TGTAGCCCCCTTGGCGCGAGGAAACGCCTTGAGCCAAAAAGACCCGTCTA
CTACGTAGTGGAGAGACGTGGCCACAAGCTGATTCTACAAGCACGCCTAC
ATCCTGAATCGCTGTTGGGC
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Coding sequence (CDS) from alignment at C-linearis_contig82:766745..770514-

>mRNA_C-linearis_contig82.16029.1 ID=mRNA_C-linearis_contig82.16029.1|Name=mRNA_C-linearis_contig82.16029.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at C-linearis_contig82:766745..770514- (Chordaria linearis ClinC8C monoicous)
ATGGAAGCTTCGGCAGAGGAAGAATACGTGAAGACCAGCACCGGGGATTT
CGTCTTCAAGAAAGCTCACGTCCACGGCTCGCAAAATCTGTATCTCAAGG
GCAAGATGGAAGCTTCGGCAGAGGAAGAATACGTGAAGACCAGCACCGGG
GATTTCGTCTTCAAGAAAGCTCACGTCCACGGCTCGCAAAATCTGTATCT
CAAGGGCAAGAGTATCATCATGCCTGGCGCAATTATCCGCGGAGAGCTAC
AGGCGATCCGAATAGGTCGGTATTGCTTCATCGGCGAGGACACCGTCATT
AGACCAGCTTACAGGCAAGCAGTATCATCATGCCTGGCGCAATTATCCGC
GGAGAGCTACAGGCGATCCGAATAGGTCGGTATTGCTTCATCGGCGAGGA
CACCGTCATTAGACCAGCTTACAGGCAAGCAATCGAGCAAGAGGGGTCAA
ATCTCAAGTGCCGCTTTACGCCGCTGTCGGTGGGCAACCACACGTACATC
GGCAAGAATTGTGTCGTAGAATCTGCCGGCATCGGGTGCACCGTGCGGAT
CGAGGACGGATGCGTGTTGAATCGAGCAAGAGGGGTCAAATCTCAAGTGC
CGCTTTACGCCGCTGTCGGTGGGCAACCACACGTACATCGGCAAGAATTG
TGTCGTAGAATCTGCCGGCATCGGGTGCACCGTGCGGATCGAGGACGGAT
GCGTGTTGGGGCGGAACAGCTTCGTGCGGGACAATTGCCACTTGTTAGCG
GGGACTGTCCTTCCGGAAGGAGCCGTGGTTCCTCCATTTACTGTGGGGCG
GAACAGCTTCGTGCGGGACAATTGCCACTTGTTAGCGGGGACTGTCCTTC
CGGAAGGAGCCGTGGTTCCTCCATTTACTGTGCTTCAAGGGTGCCCCGCG
AAGATGGTTTCGATACTGCACGAGAGCACGGCGTCCGTGTGGGCGGAGGA
TGCCGTGAGCTTGTACGAAACGTTCGAGCCGAGCAGGGTTAGCTTGGCGG
CAAATGTGTGACTTCAAGGGTGCCCCGCGAAGATGGTTTCGATACTGCAC
GAGAGCACGGCGTCCGTGTGGGCGGAGGATGCCGTGAGCTTGTACGAAAC
GTTCGAGCCGAGCAGGGTTAGCTTGGCGGCAAATGTGTGA
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