mRNA_C-linearis_contig82.16023.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.16023.1
Unique NamemRNA_C-linearis_contig82.16023.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig82.16023.1 vs. uniprot
Match: A0A6H5JE99_9PHAE (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JE99_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 3.450e-73
Identity = 135/231 (58.44%), Postives = 158/231 (68.40%), Query Frame = 3 
Query:  198 KYRVRECNGGADYSAVIGSVDAWWGGRRVSPMIPRLFFENFSDTSFVVTTVTSDDRQKPPTRPAGQEQPTATNGDEGEAKDVIVGFLCGFISQSRAGEAHAHFIGIDPAHRGARLGARLYEHFFEAAKARGCTVVHAVTSPVNTASVAFHKALGFETV-RVASGGGRDEEGVGAGEAGSSXXALGDGVAEGGHGSE-GGRAEQEAPVDSEFVHVGYDGPDDGDRVLMEMCL 884
            +YRVR C+G  DYSAVIG VDAWWGGRRVSPM+PRLFF+NF DT+F+   +  ++ QK            A   D  +  +VIVGFLCGF+SQSRAGEAHAHFIGIDPAHRGA LGA LY+ FF+A +  GCT+VHAVTSP NTASVAFHKA+GFE V  +A     DE   G G+A SS      G +E    SE  GR     PVD E VH+ YDGPDDGDRV++E  L
Sbjct:   15 RYRVRTCSGSEDYSAVIGLVDAWWGGRRVSPMLPRLFFDNFCDTTFMAV-IRDEEAQKAEXXXXXXXXXXAA--DTTQRDEVIVGFLCGFVSQSRAGEAHAHFIGIDPAHRGAGLGALLYDQFFKAVQTHGCTLVHAVTSPANTASVAFHKAIGFEAVPAIAPDAEGDERTGGTGKARSSS-----GASEHRFLSEHSGRV----PVDRELVHLDYDGPDDGDRVVLEKRL 233
[Close]
BLAST of mRNA_C-linearis_contig82.16023.1 vs. uniprot
Match: A0A7Y6CE01_9ACTN (GNAT family N-acetyltransferase n=1 Tax=Thermoleophilia bacterium TaxID=2026888 RepID=A0A7Y6CE01_9ACTN)

HSP 1 Score: 136 bits (342), Expect = 2.560e-36
Identity = 79/166 (47.59%), Postives = 98/166 (59.04%), Query Frame = 3 
Query:  228 ADYSAVIGSVDAWWGGRRVSPMIPRLFFENFSDTSFVVTTVTSDDRQKPPTRPAGQEQPTATNGDEGEAKDVIVGFLCGFISQSRAGEAHAHFIGIDPAHRGARLGARLYEHFFEAAKARGCTVVHAVTSPVNTASVAFHKALGFETVRVASGGGRDEEGVGAGEA 725
            ADY  VI  +DAWWGGR++S M+P+LFF +F DTSFV                           D+GE    + GFLCGF SQ+ A EA+ HF+G+DPA RG+ LG  LYE FF+A   R  ++V AVTSPVN  SV FH+A+GFE  RV      DE+  G GEA
Sbjct:    9 ADYGRVIDVIDAWWGGRQMSAMLPKLFFVHFRDTSFVAE-------------------------DDGE----LAGFLCGFRSQTYADEAYVHFVGVDPARRGSGLGRELYERFFQAVAPR--SIVRAVTSPVNERSVEFHRAIGFEVDRV------DEDYDGRGEA 137
[Close]
BLAST of mRNA_C-linearis_contig82.16023.1 vs. uniprot
Match: A0A7V8XGA3_9ACTN (GNAT family N-acetyltransferase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V8XGA3_9ACTN)

HSP 1 Score: 134 bits (337), Expect = 1.610e-35
Identity = 74/150 (49.33%), Postives = 90/150 (60.00%), Query Frame = 3 
Query:  231 DYSAVIGSVDAWWGGRRVSPMIPRLFFENFSDTSFVVTTVTSDDRQKPPTRPAGQEQPTATNGDEGEAKDVIVGFLCGFISQSRAGEAHAHFIGIDPAHRGARLGARLYEHFFEAAKARGCTVVHAVTSPVNTASVAFHKALGFETVRVA 680
            D+  VIG ++AWWGGR ++PM+PRLFF +F  TS+VV     DD         GQ                + GFL GF+SQ+RA EA+ HF+G+ P HRG  LG  LYE FF  A ARG T V  +TSP N ASVAFH+ALGFE   VA
Sbjct:   10 DHGRVIGRLNAWWGGRDMAPMLPRLFFVHFEGTSYVV-----DDEH-------GQ----------------LAGFLIGFLSQTRADEAYIHFVGVAPEHRGVGLGRGLYERFFSDAAARGRTTVRCITSPTNVASVAFHQALGFEVEDVA 131
[Close]
BLAST of mRNA_C-linearis_contig82.16023.1 vs. uniprot
Match: A0A0C1U3T4_9CLOT (N-acetyltransferase domain-containing protein n=2 Tax=Clostridium TaxID=1485 RepID=A0A0C1U3T4_9CLOT)

HSP 1 Score: 134 bits (337), Expect = 2.100e-35
Identity = 67/146 (45.89%), Postives = 86/146 (58.90%), Query Frame = 3 
Query:  228 ADYSAVIGSVDAWWGGRRVSPMIPRLFFENFSDTSFVVTTVTSDDRQKPPTRPAGQEQPTATNGDEGEAKDVIVGFLCGFISQSRAGEAHAHFIGIDPAHRGARLGARLYEHFFEAAKARGCTVVHAVTSPVNTASVAFHKALGFE 665
            +DY+ VI  +DAWWGGR +S M+PRLFF++F +TSF+                              E  D I+GFL GFISQS   EA+ HFIG+ P +R + +   LYE FF AA   GCT VH+VTSP+N  S+AFHK +GFE
Sbjct:    9 SDYTEVITEIDAWWGGRHMSDMLPRLFFKHFQNTSFIA-----------------------------EENDKIIGFLIGFISQSYLTEAYIHFIGVHPEYRKSGIAKELYELFFNAANKLGCTTVHSVTSPINKGSIAFHKKMGFE 125
[Close]
BLAST of mRNA_C-linearis_contig82.16023.1 vs. uniprot
Match: A0A538HCD9_9ACTN (GNAT family N-acetyltransferase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HCD9_9ACTN)

HSP 1 Score: 133 bits (335), Expect = 8.640e-35
Identity = 84/187 (44.92%), Postives = 103/187 (55.08%), Query Frame = 3 
Query:  114 CAYKP---QSAAVRLGVRHRTRPPPGMSATPKYRVRECNGGADYSAVIGSVDAWWGGRRVSPMIPRLFFENFSDTSFVVTTVTSDDRQKPPTRPAGQEQPTATNGDEGEAKDVIVGFLCGFISQSRAGEAHAHFIGIDPAHRGARLGARLYEHFFEAAKARGCTVVHAVTSPVNTASVAFHKALGFE 665
            CA  P   ++AA R  V H T P    S  P   +R    G D++ V   +DAWWGGR +  M+PRLFFE+F DTSFV  T                         +GE    IVGFLCGF+SQ+R  +A+ HF+G+ P HRG  LG  LYE FF AA A G  VV  VT+PVN  S+AFH+ LGFE
Sbjct:    8 CASTPVTVRAAAAR--VCHGTVPDVEQSL-PVVTIRHAEPG-DHARVSPHLDAWWGGRAMRAMLPRLFFEHFRDTSFVAET-------------------------DGE----IVGFLCGFLSQTRRDQAYVHFVGVRPDHRGGGLGRDLYERFFAAAGAAGRDVVRCVTAPVNEGSIAFHRRLGFE 161
[Close]
BLAST of mRNA_C-linearis_contig82.16023.1 vs. uniprot
Match: A0A859FIY3_9BACI (GNAT family N-acetyltransferase n=1 Tax=Bacillus sp. M4U3P1 TaxID=2592382 RepID=A0A859FIY3_9BACI)

HSP 1 Score: 132 bits (331), Expect = 1.640e-34
Identity = 66/146 (45.21%), Postives = 88/146 (60.27%), Query Frame = 3 
Query:  228 ADYSAVIGSVDAWWGGRRVSPMIPRLFFENFSDTSFVVTTVTSDDRQKPPTRPAGQEQPTATNGDEGEAKDVIVGFLCGFISQSRAGEAHAHFIGIDPAHRGARLGARLYEHFFEAAKARGCTVVHAVTSPVNTASVAFHKALGFE 665
            ADY  +   +DAWWGGR++S M+P+LFF +F+DTSF++                             E    I GFLCGF+SQ    EA+ HFIG+DP  R  ++G +LYE FF+  +A+G TVV AVTSP+NTAS+AFH  +GFE
Sbjct:   10 ADYQTIHSVMDAWWGGRQMSDMLPKLFFIHFTDTSFIM-----------------------------EENGEIQGFLCGFMSQLYPEEAYVHFIGVDPNARRGQVGKQLYEQFFKTVQAKGATVVRAVTSPINTASIAFHTRIGFE 126
[Close]
BLAST of mRNA_C-linearis_contig82.16023.1 vs. uniprot
Match: A0A535RBL5_9CHLR (GNAT family N-acetyltransferase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535RBL5_9CHLR)

HSP 1 Score: 130 bits (327), Expect = 4.960e-34
Identity = 74/154 (48.05%), Postives = 87/154 (56.49%), Query Frame = 3 
Query:  204 RVRECNGGADYSAVIGSVDAWWGGRRVSPMIPRLFFENFSDTSFVVTTVTSDDRQKPPTRPAGQEQPTATNGDEGEAKDVIVGFLCGFISQSRAGEAHAHFIGIDPAHRGARLGARLYEHFFEAAKARGCTVVHAVTSPVNTASVAFHKALGFE 665
            R+R     ADY  V    DAWWGGR +  M+PRLFFE+F +TSFV                           DEGE    +VGFLCGF+SQ+   +A+ HF+G+ P  RG  LG  LYE FFEAA A G  VV  VT+PVN ASVAFH  LGFE
Sbjct:    3 RIRHAEA-ADYGRVSPRPDAWWGGRPMRTMLPRLFFEHFRETSFVAE-------------------------DEGE----LVGFLCGFLSQTYPDQAYVHFVGVRPDRRGGGLGRELYERFFEAALAAGRPVVRCVTAPVNEASVAFHTRLGFE 126
[Close]
BLAST of mRNA_C-linearis_contig82.16023.1 vs. uniprot
Match: UPI001F5A1D1E (GNAT family N-acetyltransferase n=1 Tax=Anaeromyxobacter sp. SG22 TaxID=2925406 RepID=UPI001F5A1D1E)

HSP 1 Score: 129 bits (325), Expect = 1.050e-33
Identity = 70/160 (43.75%), Postives = 89/160 (55.62%), Query Frame = 3 
Query:  228 ADYSAVIGSVDAWWGGRRVSPMIPRLFFENFSDTSFVVTTVTSDDRQKPPTRPAGQEQPTATNGDEGEAKDVIVGFLCGFISQSRAGEAHAHFIGIDPAHRGARLGARLYEHFFEAAKARGCTVVHAVTSPVNTASVAFHKALGFETVRVASGGGRDEEG 707
            ADY  +I  +DAWWGGRR++ M+PRLFF +F  TSF                               EA   + GFL GF SQ+   +A+ HF+G+DPA R A +G  LYE FFEA +A G + VH VTSPVNT S+AFH A+GFE +   +G   D  G
Sbjct:   11 ADYGPIIRVLDAWWGGRRMADMLPRLFFVHFRPTSFAA-----------------------------EADGKLAGFLAGFRSQTHREQAYIHFVGVDPAFRAAGVGRALYERFFEAVRALGVSEVHGVTSPVNTGSLAFHAAMGFELLTGEAGAAYDGPG 141
[Close]
BLAST of mRNA_C-linearis_contig82.16023.1 vs. uniprot
Match: A0A3G8GIV7_9BURK (GNAT family N-acetyltransferase n=4 Tax=Alcaligenaceae TaxID=506 RepID=A0A3G8GIV7_9BURK)

HSP 1 Score: 128 bits (322), Expect = 4.270e-33
Identity = 66/145 (45.52%), Postives = 83/145 (57.24%), Query Frame = 3 
Query:  231 DYSAVIGSVDAWWGGRRVSPMIPRLFFENFSDTSFVVTTVTSDDRQKPPTRPAGQEQPTATNGDEGEAKDVIVGFLCGFISQSRAGEAHAHFIGIDPAHRGARLGARLYEHFFEAAKARGCTVVHAVTSPVNTASVAFHKALGFE 665
            DY  +   VD WWGGR +  ++ RLFFE+F DTSFV                          G  GE +     FL GF+SQS AG A+ HF+G+DPA R A LG  LYE FF+  +ARGC  VH++TSP NT S+AFH+ +GFE
Sbjct:   13 DYEPIASVVDDWWGGRPMRGLLQRLFFEHFRDTSFVA-------------------------GQPGEVR----AFLIGFVSQSEAGVAYIHFVGVDPALRAAGLGRVLYERFFDTVRARGCREVHSITSPANTGSIAFHRRMGFE 128
[Close]
BLAST of mRNA_C-linearis_contig82.16023.1 vs. uniprot
Match: A0A7W0TVK6_9CHLR (GNAT family N-acetyltransferase n=1 Tax=Chloroflexia bacterium TaxID=2448782 RepID=A0A7W0TVK6_9CHLR)

HSP 1 Score: 128 bits (321), Expect = 6.560e-33
Identity = 66/148 (44.59%), Postives = 83/148 (56.08%), Query Frame = 3 
Query:  228 ADYSAVIGSVDAWWGGRRVSPMIPRLFFENFSDTSFVVTTVTSDDRQKPPTRPAGQEQPTATNGDEGEAKDVIVGFLCGFISQSRAGEAHAHFIGIDPAHRGARLGARLYEHFFEAAKARGCTVVHAVTSPVNTASVAFHKALGFETV 671
            ADY  +I  VD WWGGR +  M+PRLFF +F  TSFV                              E   V+VGFLCGF+SQ+     + HF+G+DPA RGA +G  LY  F +AA+  GC  VHAVT+P N AS+AFH+ LGFE +
Sbjct:   13 ADYQNLIERVDDWWGGRTMRAMLPRLFFAHFQPTSFVA-----------------------------ERGGVVVGFLCGFVSQTAPEITYVHFVGVDPAVRGAGIGQALYVRFGDAARTLGCREVHAVTAPTNAASIAFHRRLGFEAL 131
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE99_9PHAE3.450e-7358.44N-acetyltransferase domain-containing protein n=2 ... [more]
A0A7Y6CE01_9ACTN2.560e-3647.59GNAT family N-acetyltransferase n=1 Tax=Thermoleop... [more]
A0A7V8XGA3_9ACTN1.610e-3549.33GNAT family N-acetyltransferase n=1 Tax=Actinomyce... [more]
A0A0C1U3T4_9CLOT2.100e-3545.89N-acetyltransferase domain-containing protein n=2 ... [more]
A0A538HCD9_9ACTN8.640e-3544.92GNAT family N-acetyltransferase n=1 Tax=Actinomyce... [more]
A0A859FIY3_9BACI1.640e-3445.21GNAT family N-acetyltransferase n=1 Tax=Bacillus s... [more]
A0A535RBL5_9CHLR4.960e-3448.05GNAT family N-acetyltransferase n=1 Tax=Chloroflex... [more]
UPI001F5A1D1E1.050e-3343.75GNAT family N-acetyltransferase n=1 Tax=Anaeromyxo... [more]
A0A3G8GIV7_9BURK4.270e-3345.52GNAT family N-acetyltransferase n=4 Tax=Alcaligena... [more]
A0A7W0TVK6_9CHLR6.560e-3344.59GNAT family N-acetyltransferase n=1 Tax=Chloroflex... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:717240..720303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score122.9
Seed ortholog evalue2.5e-25
Seed eggNOG ortholog404589.Anae109_4177
Preferred nameyqjY
KEGG koko:K06977
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0006464,GO:0006473,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016740,GO:0016746,GO:0016747,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564
EggNOG free text desc.Acetyltransferase (GNAT) domain
EggNOG OGs1PYGZ@1224,2WZR5@28221,2Z2JT@29,435DK@68525,COG0454@1,COG0456@2
COG Functional cat.K
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons2
Model size887
Cds size861
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16023.1prot_C-linearis_contig82.16023.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 717240..720277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930616.967431-CDS-C-linearis_contig82:717239..7176351622930616.967431-CDS-C-linearis_contig82:717239..717635Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 717240..717635 -
1690881161.5693383-CDS-C-linearis_contig82:717239..7176351690881161.5693383-CDS-C-linearis_contig82:717239..717635Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 717240..717635 -
1622930616.9836307-CDS-C-linearis_contig82:719812..7202771622930616.9836307-CDS-C-linearis_contig82:719812..720277Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 719813..720277 -
1690881161.5822735-CDS-C-linearis_contig82:719812..7202771690881161.5822735-CDS-C-linearis_contig82:719812..720277Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 719813..720277 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930617.0026467-UTR-C-linearis_contig82:720277..7203031622930617.0026467-UTR-C-linearis_contig82:720277..720303Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 720278..720303 -
1690881161.5921495-UTR-C-linearis_contig82:720277..7203031690881161.5921495-UTR-C-linearis_contig82:720277..720303Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 720278..720303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.16023.1

>prot_C-linearis_contig82.16023.1 ID=prot_C-linearis_contig82.16023.1|Name=mRNA_C-linearis_contig82.16023.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=287bp
MALPFDACAALFKLLRCFVCLLSLTQTGGCAYKPQSAAVRLGVRHRTRPP
PGMSATPKYRVRECNGGADYSAVIGSVDAWWGGRRVSPMIPRLFFENFSD
TSFVVTTVTSDDRQKPPTRPAGQEQPTATNGDEGEAKDVIVGFLCGFISQ
SRAGEAHAHFIGIDPAHRGARLGARLYEHFFEAAKARGCTVVHAVTSPVN
TASVAFHKALGFETVRVASGGGRDEEGVGAGEAGSSAGALGDGVAEGGHG
SEGGRAEQEAPVDSEFVHVGYDGPDDGDRVLMEMCL*
back to top

mRNA from alignment at C-linearis_contig82:717240..720303-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.16023.1 ID=mRNA_C-linearis_contig82.16023.1|Name=mRNA_C-linearis_contig82.16023.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3064bp|location=Sequence derived from alignment at C-linearis_contig82:717240..720303- (Chordaria linearis ClinC8C monoicous)
GCTCCACGTGGCTGCTGCAGTAGTATATGGCGCTGCCTTTTGACGCTTGC
GCTGCTCTCTTTAAGCTGCTGCGCTGCTTTGTGTGCTTGCTCAGCCTGAC
ACAGACGGGTGGATGCGCGTATAAGCCTCAATCTGCAGCAGTCCGACTCG
GAGTGCGGCACCGCACACGACCGCCTCCGGGAATGAGCGCAACCCCAAAG
TACCGCGTGCGAGAGTGCAACGGGGGTGCCGACTACTCGGCAGTCATCGG
CTCGGTCGATGCTTGGTGGGGAGGAAGGCGAGTTTCCCCGATGATTCCAC
GGCTTTTCTTTGAAAACTTCTCCGATACGAGCTTCGTTGTTACAACAGTA
ACAAGTGATGACCGCCAAAAGCCACCAACCCGGCCAGCGGGCCAGGAGCA
GCCGACGGCGACGAATGGGGACGAAGGAGAGGCAAAGGATGTTATTGTGG
GCTTTCTCTGTGGCTTCATTTCGCAGTCGAGGGCCGGAGAGGTGAGGCAG
CAGGGTCCATTTAAGTAGCACAAACTTGGATTACCGTAGTGACGAGCGAT
AGCACACCTGTGTGTGTGTGTGTGTGTTTTTTCGTCCCATTTATTTTGGC
GACAGTCCCTTTCCGATCAAGGCGAGACGTGTACTACACGTTGCGGTGTA
TTTAGAGTACTACACTTGTTCAGTGTATTTTTCTGTACAACTAGAACCAA
CCGGGGTCACACAGGAGGGGGTAAACACTGGGGCTTTTTTCTTCTTTTTC
TGTTTCTTTTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTGTATTTTA
TCGCGAGAAGGGTGCAGCCATCCCTTTCCCTCGTCAACGTGCTAAGTCGA
AGTTTGGTACTCACGAGCTTTTTCAGCTATGTTATCGCTTTCACCTGCAG
AATCGCAAAAGAAACGCCTTTGCTTGGAATTGAACTCCAGACTTTGCTGC
TAGTGGGTTCGAGGTTAAACCACTAGTCCACCGGGGCGACCGGCTGTCAC
CTGTGCGATCGATTTTTAAATGATTTGAAACTGGCTTTTTTAGCGCACAG
GGGGGGTCCGATCTCTCGGACCCTGTGCGGAATTTCAATTAAATGTTTTG
GCTCTGCTCGTCTAGCGCACACCCCTGTGCGATCTCTCCGGCATGTGCGA
TGCTGACTAAAGACTAAATTATGTTGATGGCACTGGTGCTCTCCACGTAC
AAGTTTCGGTCTGGTAGATACCGATTCCAATGAGAACTCGATCATTTTTA
GTGCGCACTGCCACGCACGAGCACGCTCAACACAGAGTAGAGCCTCGATG
ACTTACAATACTGGGAAATCAAATTGTACAGACGCAAGCGTTGCAGCCGC
GGGTGCGCCCCTGGGCGCATTCAAGTGGGAAAGGGTCCGAGAGATCGCAC
CCCTGTGCCATCTCTCGGGCCCTGTGCGAAAATCCATTTGAATCATGTCA
CACTGGCATTTTTATCGCACAGGTGCCATCTCTCCGCAATGTGCCATCGC
TCGAACACTCACGATACATGTGAAATTTTCGATTTTGCAACTTCGAAAAA
AATGATGAAAAATGATGGAAGACACGCTTTTTTCATTTGAGAGGCTATGT
TGCGTATGTACATTCTCCAGTTTCGGCTCAAGGCCCCGAAAATTGTCGTT
GTTGACCCGTGCGTAGCCACTTCGCTTCAGTCTGTTAAGACACACCTGTC
GTTTGTTCCGACGAGATGCTCTCTATCTCTACCCCACCAAACTATGTGAA
GTTGGAAGTTGGTGCATACAGTACCTGAAGCGCGGCAAAGTGCCACCTAT
AGCATTACAGAAAGCGTGGCTTTTAGATTTTTTTCCGCCTAAAATACCTC
CAGTAGACTACTGTAGGCCTAACCGAGCGAGACCAAGGCCTCAAAGGCCA
CGCGGGTCCAACCCTACCCAACCCTACCCAAACTACACCGGCGTTCCAAC
TGTAGTACCTCCCGGACCAACCCAACCCACCGTCAACGCAGCGCAACCCG
ACCCATGGATGAATAGTGACCCGGCGTGCCTTTTCAAGACGTAGACTGAC
TGCTGTACACGACACCATTAACCTAAAGCGTGTCCTCGGCCACGATTGTT
GGGGCGATTGGACGTGGCGCGCTTGCCAAACGCGGGCAGCTCAAAGACAC
ACAGACACCAAAACTACGATAGGTTGGCGAAACAGACACGAAACTCGAAA
CAAATAACTGCACGGAGGAGCGCGGCACGTGTTGTCTTTCCTTCACCCTC
GCTACAGTAGTAGTGATTTTGACTTTTGGTGCTCTAAATAAACTATGCTA
GGAGAAGGGGAAACGGCGGCGAAAAGATCGCGGCTCGAACGACCGAACGA
ACACGGGATTTGTTTTTGTGCCCCCGCAAAACTCTTCGGGGCTTCGTGTG
TGTGTGGAGGGCCGGGGGGGGAGGGGTCTATATGAAGGGAAAAATAATGG
CGAGCTCATGAGGAGTTTTTTTCCGAAACAAAAACACTCCCTTCCTACAA
TCTCTGGTTGAACCACACAGCGCAGTGGGTGGTTTTGCTTGCGGTCCAGC
ATGCGGCATGGGCGCTAAGCGCGGGTTTTGTTTTTATCCCACCTAGCGGG
GCCGCTTCCCTGCACCACACCGACCTCGTCGGCATCGTTTGTCTGTTTGC
CTCCGGCTCGTATTCCAGGCACACGCCCACTTCATCGGCATCGACCCAGC
CCACAGAGGGGCACGGCTGGGAGCGAGGCTGTACGAGCATTTCTTCGAGG
CGGCCAAAGCTCGCGGCTGCACCGTCGTCCACGCTGTAACAAGCCCAGTC
AACACTGCATCCGTAGCGTTCCACAAAGCCCTCGGCTTCGAAACGGTGCG
CGTCGCATCGGGCGGGGGGAGAGACGAGGAAGGGGTTGGGGCTGGGGAAG
CTGGATCTAGCGCGGGGGCGTTGGGTGATGGTGTCGCTGAGGGTGGCCAT
GGCTCGGAAGGTGGGCGGGCCGAGCAAGAGGCTCCTGTCGACAGCGAATT
CGTGCACGTTGGCTATGACGGACCAGATGACGGGGACAGGGTGTTGATGG
AGATGTGTTTGTGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig82:717240..720303-

>mRNA_C-linearis_contig82.16023.1 ID=mRNA_C-linearis_contig82.16023.1|Name=mRNA_C-linearis_contig82.16023.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1722bp|location=Sequence derived from alignment at C-linearis_contig82:717240..720303- (Chordaria linearis ClinC8C monoicous)
ATGGCGCTGCCTTTTGACGCTTGCGCTGCTCTCTTTAAGCTGCTGCGCTG
CTTTGTGTGCTTGCTCAGCCTGACACAGACGGGTGGATGCGCGTATAAGC
CTCAATCTGCAGCAGTCCGACTCGGAGTGCGGCACCGCACACGACCGCCT
CCGGGAATGAGCGCAACCCCAAAGTACCGCGTGCGAGAGTGCAACGGGGG
TGCCGACTACTCGGCAGTCATCGGCTCGGTCGATGCTTGGTGGGGAGGAA
GGCGAGTTTCCCCGATGATTCCACGGCTTTTCTTTGAAAACTTCTCCGAT
ACGAGCTTCGTTGTTACAACAGTAACAAGTGATGACCGCCAAAAGCCACC
AACCCGGCCAGCGGGCCAGGAGCAGCCGACGGCGACGAATGGGGACGAAG
GAGAGGCAAAGGATGTTATTGTGGGCTTTCTCTGTGGCTTCATTTCGCAG
TCGAGGGCCGGAGAGATGGCGCTGCCTTTTGACGCTTGCGCTGCTCTCTT
TAAGCTGCTGCGCTGCTTTGTGTGCTTGCTCAGCCTGACACAGACGGGTG
GATGCGCGTATAAGCCTCAATCTGCAGCAGTCCGACTCGGAGTGCGGCAC
CGCACACGACCGCCTCCGGGAATGAGCGCAACCCCAAAGTACCGCGTGCG
AGAGTGCAACGGGGGTGCCGACTACTCGGCAGTCATCGGCTCGGTCGATG
CTTGGTGGGGAGGAAGGCGAGTTTCCCCGATGATTCCACGGCTTTTCTTT
GAAAACTTCTCCGATACGAGCTTCGTTGTTACAACAGTAACAAGTGATGA
CCGCCAAAAGCCACCAACCCGGCCAGCGGGCCAGGAGCAGCCGACGGCGA
CGAATGGGGACGAAGGAGAGGCAAAGGATGTTATTGTGGGCTTTCTCTGT
GGCTTCATTTCGCAGTCGAGGGCCGGAGAGGCACACGCCCACTTCATCGG
CATCGACCCAGCCCACAGAGGGGCACGGCTGGGAGCGAGGCTGTACGAGC
ATTTCTTCGAGGCGGCCAAAGCTCGCGGCTGCACCGTCGTCCACGCTGTA
ACAAGCCCAGTCAACACTGCATCCGTAGCGTTCCACAAAGCCCTCGGCTT
CGAAACGGTGCGCGTCGCATCGGGCGGGGGGAGAGACGAGGAAGGGGTTG
GGGCTGGGGAAGCTGGATCTAGCGCGGGGGCGTTGGGTGATGGTGTCGCT
GAGGGTGGCCATGGCTCGGAAGGTGGGCGGGCCGAGCAAGAGGCTCCTGT
CGACAGCGAATTCGTGCACGTTGGCTATGACGGACCAGATGACGGGGACA
GGGTGTTGATGGAGATGTGTTTGTGAGCACACGCCCACTTCATCGGCATC
GACCCAGCCCACAGAGGGGCACGGCTGGGAGCGAGGCTGTACGAGCATTT
CTTCGAGGCGGCCAAAGCTCGCGGCTGCACCGTCGTCCACGCTGTAACAA
GCCCAGTCAACACTGCATCCGTAGCGTTCCACAAAGCCCTCGGCTTCGAA
ACGGTGCGCGTCGCATCGGGCGGGGGGAGAGACGAGGAAGGGGTTGGGGC
TGGGGAAGCTGGATCTAGCGCGGGGGCGTTGGGTGATGGTGTCGCTGAGG
GTGGCCATGGCTCGGAAGGTGGGCGGGCCGAGCAAGAGGCTCCTGTCGAC
AGCGAATTCGTGCACGTTGGCTATGACGGACCAGATGACGGGGACAGGGT
GTTGATGGAGATGTGTTTGTGA
back to top