mRNA_C-linearis_contig82.16016.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.16016.1
Unique NamemRNA_C-linearis_contig82.16016.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:651259..652100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size195
Cds size168
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16016.1prot_C-linearis_contig82.16016.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 651286..652100 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.4244134-UTR-C-linearis_contig82:651258..6512851622930607.4244134-UTR-C-linearis_contig82:651258..651285Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 651259..651285 +
1690881157.0446675-UTR-C-linearis_contig82:651258..6512851690881157.0446675-UTR-C-linearis_contig82:651258..651285Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 651259..651285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.4475944-CDS-C-linearis_contig82:651285..6513321622930607.4475944-CDS-C-linearis_contig82:651285..651332Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 651286..651332 +
1690881157.056252-CDS-C-linearis_contig82:651285..6513321690881157.056252-CDS-C-linearis_contig82:651285..651332Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 651286..651332 +
1622930607.4653122-CDS-C-linearis_contig82:651979..6521001622930607.4653122-CDS-C-linearis_contig82:651979..652100Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 651980..652100 +
1690881157.0680459-CDS-C-linearis_contig82:651979..6521001690881157.0680459-CDS-C-linearis_contig82:651979..652100Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 651980..652100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.16016.1

>prot_C-linearis_contig82.16016.1 ID=prot_C-linearis_contig82.16016.1|Name=mRNA_C-linearis_contig82.16016.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=56bp
MEDNKTKGWPSARQAREEENTSSPLPRDTADALLAISEAARRHRHQHGHL
EDATNW
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mRNA from alignment at C-linearis_contig82:651259..652100+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.16016.1 ID=mRNA_C-linearis_contig82.16016.1|Name=mRNA_C-linearis_contig82.16016.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=842bp|location=Sequence derived from alignment at C-linearis_contig82:651259..652100+ (Chordaria linearis ClinC8C monoicous)
CAGCAATCAGGACAGCAGCACGTGCAAATGGAGGACAACAAAACGAAGGG
GTGGCCCTCTGCCCGTCAAGCCCGGTAAGATCAAGCGTCTTGCTGTTGCT
GTGCCACGAACGGACGCGGATTGCTTAGTGCTGGACGTACCCTGGACAAA
AAGTCGACAACGACGTCGAATTGCTGTGTTTTAGGTTCTTTTTTTGTGCC
CGCCGTGCACCCTTTAGTGGTAACCTCAAACCAGCTAAGAGTAGCAGTAA
AAGTGGTGAGTTCGACCCCCATGGGGTAAAGACATTGCAAATTGGCGAGC
TGAAAAAGCTCGTGAGCACCAAAAACTTTCGACGTTGTTACCGTTGACGA
GGGAAAGGGAGACGGCTGAACCCTTTTCGCGATAAAAATGAAGGCACGCA
CCGCAGGAGGAAGGTGGAGGAAAAAAAGAAAGAGAAAAAAGAAGAAAAGA
AGCCCCTGTGTTTAACCCCTCCTGTTTGACCCCGGTTGGTTCTAGACTAG
TTGTACAGAAAAATACACTGAACGAGTGTAGTACTCTAAATACACCGCAA
CGTGTAGCACACGTCTCGCCTTGATCGGAAAGGGACTGTCGCCAAAATAA
ATGGGACGAAAACACACGACACACGCACCCTTTGGAGTATAGACTATGTA
CAATATGCTGCCGGTAGACACATGATTTCGCCAACCCACGGCCTGTTATG
CTGTTGCTCGCGCGCTACCAGCGAGGAGGAGAACACCTCCTCTCCCCTGC
CAAGAGATACGGCAGATGCTCTTTTGGCCATTTCTGAGGCAGCGAGACGC
CATCGCCATCAGCATGGCCATCTTGAGGATGCTACCAACTGG
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Coding sequence (CDS) from alignment at C-linearis_contig82:651259..652100+

>mRNA_C-linearis_contig82.16016.1 ID=mRNA_C-linearis_contig82.16016.1|Name=mRNA_C-linearis_contig82.16016.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at C-linearis_contig82:651259..652100+ (Chordaria linearis ClinC8C monoicous)
ATGGAGGACAACAAAACGAAGGGGTGGCCCTCTGCCCGTCAAGCCCGATG
GAGGACAACAAAACGAAGGGGTGGCCCTCTGCCCGTCAAGCCCGCGAGGA
GGAGAACACCTCCTCTCCCCTGCCAAGAGATACGGCAGATGCTCTTTTGG
CCATTTCTGAGGCAGCGAGACGCCATCGCCATCAGCATGGCCATCTTGAG
GATGCTACCAACTGGCGAGGAGGAGAACACCTCCTCTCCCCTGCCAAGAG
ATACGGCAGATGCTCTTTTGGCCATTTCTGAGGCAGCGAGACGCCATCGC
CATCAGCATGGCCATCTTGAGGATGCTACCAACTGG
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