mRNA_C-linearis_contig82.16013.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.16013.1
Unique NamemRNA_C-linearis_contig82.16013.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig82.16013.1 vs. uniprot
Match: D8LGW6_ECTSI (Centrosomal protein POC5 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGW6_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 7.640e-96
Identity = 172/219 (78.54%), Postives = 187/219 (85.39%), Query Frame = 1 
Query:  268 TASASLATKAGVLGERLAALHARTSSGSGVARCLCAWRGEVARIKAERSKNTTAGDHARRKLISCTLNAWRVEARLRIDSRGRKAADQRLHAISKEIIGRYEAELSSTRAALDDAVNQIALEKARQREMEEGMRRTLLRGMSAMNMEAMRLMTEARDAGQEEFGLSGTT--TGTRYSAVGTDA-SYAPRAAGTTQH--RMSEEWPRPLTPPRPAAPSAR 909
            +A+  L  KA V GERL+ALHART  GS +ARCLCAWRGE ARI+AERSKN TAGDHARRKL+S TL AWR E R RI+SRGRK AD +LHAISKEIIGRYE ELSSTRAALDDA++QIALEKARQREMEEGMRRTLLRGMSAMNMEAMRLMTEARDAG++EFGLSGTT  TGTRYSA GTDA S+  RAA    H  R+SEEWPRPLTPPRPA PS+R
Sbjct:    2 SANTVLEGKAEVFGERLSALHARTHGGSYLARCLCAWRGEAARIRAERSKNVTAGDHARRKLMSRTLGAWRGETRQRINSRGRKEADLKLHAISKEIIGRYETELSSTRAALDDAISQIALEKARQREMEEGMRRTLLRGMSAMNMEAMRLMTEARDAGEDEFGLSGTTATTGTRYSAGGTDAPSFGARAAAGAAHHSRLSEEWPRPLTPPRPAVPSSR 220
[Close]
BLAST of mRNA_C-linearis_contig82.16013.1 vs. uniprot
Match: A0A6H5JAX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAX9_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 8.580e-21
Identity = 57/91 (62.64%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:    1 ETGAGDVGQQAEGGS--PAFGEELEVFSSALRKDFELKLLVTASDGLAAACERERSAGRLRLEAYKRQSGEEILHLEGEGRRLRAQAAILQ 267
            ++G G+   + EGG     F EEL+VF+S+LR+DFE KL+VTA DGLAAAC RER+AGRLRLEA +R S EEILHLE EGRRL A+ A L+
Sbjct:  123 DSGGGESDDEVEGGGVDAGFREELDVFASSLRRDFERKLMVTARDGLAAACARERNAGRLRLEAQRRHSSEEILHLEAEGRRLEAEVARLR 213
[Close]
BLAST of mRNA_C-linearis_contig82.16013.1 vs. uniprot
Match: A0A7S4D5K4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5K4_HETAK)

HSP 1 Score: 57.4 bits (137), Expect = 6.350e-6
Identity = 35/96 (36.46%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:  451 LISCTLNAWRVE-ARLRIDSRGRKAADQRLHAISKEIIGRYEAELSSTRAALDDAVNQIALEKARQREMEEGMRRTLLRGMSAMNMEAMRLMTEAR 735
            ++   L+ WR+E A  R++++ +K  + +L  +++E+IGRYEAEL    A L  A + +  E+ R+R+MEE  R+ +L+G++AMN+ A+ L  + R
Sbjct:    1 ILRSLLSQWRIETAERRLEAQKQKY-EAKLGRVTRELIGRYEAELRRMAADLGHARDLVRGEQRRRRQMEEEFRQAILKGITAMNVGAIGLFGDQR 95
[Close]
BLAST of mRNA_C-linearis_contig82.16013.1 vs. uniprot
Match: A0A388KH08_CHABU (Centrosomal protein POC5 n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KH08_CHABU)

HSP 1 Score: 60.1 bits (144), Expect = 1.040e-5
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 1 
Query:  361 RCLCAWRGEVARIKAERSKNTTAGD-HARRKLISCTLNAWRVEARLRIDSRGRKAADQRLHAISKEIIGRYEAELSSTRAALDDAVNQIALEKARQREMEEGMRRTLLRGMSAMNMEAMRLMTEARDAG 744
            R +  W   VARIK  + K   A   + +R L+   L AW  E R+    R +     RL     EI+ +YE +L+  R  L DA  ++  E+ R R++EE  ++  +RG+ A+N+EAM LM      G
Sbjct:  342 RTMWRWFSTVARIKRMKEKERQADIFYLKRVLLGKMLRAWHREIRMSGRDRLQNLFFDRLAKAKDEIMAKYEEQLAHVRDDLLDARREVQKEQDRSRKLEENTKQAFMRGVCALNIEAMALMKHGTPVG 470
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16013.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LGW6_ECTSI7.640e-9678.54Centrosomal protein POC5 n=2 Tax=Ectocarpus TaxID=... [more]
A0A6H5JAX9_9PHAE8.580e-2162.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4D5K4_HETAK6.350e-636.46Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A388KH08_CHABU1.040e-533.33Centrosomal protein POC5 n=1 Tax=Chara braunii Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:627003..636326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size2072
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16013.1prot_C-linearis_contig82.16013.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 628163..629738 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930614.6635323-UTR-C-linearis_contig82:627002..6281621622930614.6635323-UTR-C-linearis_contig82:627002..628162Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 627003..628162 -
1690881160.3322961-UTR-C-linearis_contig82:627002..6281621690881160.3322961-UTR-C-linearis_contig82:627002..628162Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 627003..628162 -
1622930614.751547-UTR-C-linearis_contig82:629738..6297591622930614.751547-UTR-C-linearis_contig82:629738..629759Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 629739..629759 -
1690881160.3779497-UTR-C-linearis_contig82:629738..6297591690881160.3779497-UTR-C-linearis_contig82:629738..629759Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 629739..629759 -
1622930614.784198-UTR-C-linearis_contig82:631111..6311791622930614.784198-UTR-C-linearis_contig82:631111..631179Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 631112..631179 -
1690881160.3877888-UTR-C-linearis_contig82:631111..6311791690881160.3877888-UTR-C-linearis_contig82:631111..631179Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 631112..631179 -
1622930614.8062522-UTR-C-linearis_contig82:631896..6320151622930614.8062522-UTR-C-linearis_contig82:631896..632015Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 631897..632015 -
1690881160.3994453-UTR-C-linearis_contig82:631896..6320151690881160.3994453-UTR-C-linearis_contig82:631896..632015Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 631897..632015 -
1622930614.8226411-UTR-C-linearis_contig82:632830..6330041622930614.8226411-UTR-C-linearis_contig82:632830..633004Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 632831..633004 -
1690881160.4176416-UTR-C-linearis_contig82:632830..6330041690881160.4176416-UTR-C-linearis_contig82:632830..633004Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 632831..633004 -
1622930614.8384554-UTR-C-linearis_contig82:633450..6336111622930614.8384554-UTR-C-linearis_contig82:633450..633611Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 633451..633611 -
1690881160.4314287-UTR-C-linearis_contig82:633450..6336111690881160.4314287-UTR-C-linearis_contig82:633450..633611Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 633451..633611 -
1622930614.8545113-UTR-C-linearis_contig82:636218..6363261622930614.8545113-UTR-C-linearis_contig82:636218..636326Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 636219..636326 -
1690881160.4453006-UTR-C-linearis_contig82:636218..6363261690881160.4453006-UTR-C-linearis_contig82:636218..636326Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 636219..636326 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930614.695542-CDS-C-linearis_contig82:628162..6282261622930614.695542-CDS-C-linearis_contig82:628162..628226Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 628163..628226 -
1690881160.348628-CDS-C-linearis_contig82:628162..6282261690881160.348628-CDS-C-linearis_contig82:628162..628226Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 628163..628226 -
1622930614.7159512-CDS-C-linearis_contig82:628881..6289951622930614.7159512-CDS-C-linearis_contig82:628881..628995Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 628882..628995 -
1690881160.3596525-CDS-C-linearis_contig82:628881..6289951690881160.3596525-CDS-C-linearis_contig82:628881..628995Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 628882..628995 -
1622930614.7337818-CDS-C-linearis_contig82:629655..6297381622930614.7337818-CDS-C-linearis_contig82:629655..629738Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 629656..629738 -
1690881160.3685963-CDS-C-linearis_contig82:629655..6297381690881160.3685963-CDS-C-linearis_contig82:629655..629738Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 629656..629738 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.16013.1

>prot_C-linearis_contig82.16013.1 ID=prot_C-linearis_contig82.16013.1|Name=mRNA_C-linearis_contig82.16013.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=87bp
MEEGMRRTLLRGMSAMNMEAMRLMTEARDAGQEEFGLSGTTTGTRYSAVG
TDASYAPRAAGTTQHRMSEEWPRPLTPPRPAAPSAR*
back to top

mRNA from alignment at C-linearis_contig82:627003..636326-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.16013.1 ID=mRNA_C-linearis_contig82.16013.1|Name=mRNA_C-linearis_contig82.16013.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=9324bp|location=Sequence derived from alignment at C-linearis_contig82:627003..636326- (Chordaria linearis ClinC8C monoicous)
GAGACGGGGGCGGGGGACGTTGGCCAGCAGGCAGAGGGAGGATCTCCAGC
CTTTGGAGAAGAGCTAGAGGTTTTTTCTTCGGCTCTGCGAAAGGACTTCG
AGCTCAAGGTGAGGGCCGGGGTTGGGAACTCACGTTTTGGTGCGGTGCTT
GCTTTTGCTGTATGGTCTGCCTCGTTTTTTTTGTCTGCTCCAGCTGTGTG
TACTGCTAGGGTGATACTAGTGTTAGATTAGATGTGGGCCTTAGCCCCAA
GTTTGGGCCCAAAATGTGTCCCGTGATCTCCAGACATTCTGGTATGACTA
GACTGATTTTCGAGTTCTAGGCCAATCACAACTCTCGAATTTATTCCTCC
GCAGCCAAACCCAGCTGAAAAAATGCAAGCGCTCCGACACGGCTCGTTTT
GCTGACACCTCCAGCTGCCCCGAGCCGCTCCGACGAACCCAACCACATAC
ACTGAGAGCTCACCTCGCGCTCTTTCTTGGAAGCCCTTGGGCGTGTCTCT
CCTCGACGTATCGTTGCCAAAATCTGTCTCGCAGCGTTTGCAAAGAACTG
CTGGCGTGCTTTCGGCGAAATGCACGGCACGTAATTTTGTTTTTAATGTC
TTGTCGGCTTTTGCAGAACGCTGCGAGACAGATTTTGGCACCGACACGTC
GAGGAGAGACACGCCCGAGGGCTTTCAAGAAAGAGCGCGAATAGAGCTAT
CAGCGCATGTGGTTGGTGTCGTTTGGGGTAGCTCCTGAGTGTCGTGTGGA
TGTGTTTTATCTTTTTGATTTATGCACCAAAATATGCCGGTATATGTTTT
CGTGTCTTGCCCGCTTTCTGTTCGAGCGCACACGGTACGTCTCGTTTCTC
ACACACCTCCAGCCACCCCCCGGCCTCCCCAGGCAAACCTAACCACATAC
ACTGAGAGCTCTACTCGCGCTCTTTCTTGGAAGCCCTTGGGCGTGTCTCT
CCTCGACGTATCGTTGCCAAAATCTGTCTCGCAGCGTTTGCGAAGAATGG
CTGGCGTGCTTTCGGCGAAATGCACGGCACGTAATTTTGTTTTTAATGTC
TTGTCGGCTTTTGCAGAACGCTGCGAGACAGATTTTGGCACCGACACGTC
GAGGAGAGACACGCCCAAGGGCTTCCAAGAAGGAGCGCGAATAGAGCTAT
CAGCGCATGTGGTTGGTTTCGTTTGGGGTAGCTCCTGAGTGTCGTGTGGA
TGTGTTTTATCTTTTTGATTTACGCACCAAAATATGCCGGTATATGTTTT
CGTGTCTTGCCCGCTTTCTGTTCGAGCGCACACGCTACGTCTCGTTTCTC
ACACACCTCCAGCCACCCCCCGGCCTCCCCAGGCAAACCTAACCACATAC
ACTGAGAGCTCTACTCGCGCTCTTTCTTGGAAGCCCTTGGGCGTGTCTCT
CCTCGACGTATCGTTGCCAAAATCTGTCTCGCAGCGTTTGCGAAGAACGG
CTGGTGTGCTTTCGGCGAAATGCACACCGCACGTCATTTTTTTGGTATTT
TGTTGGCCTTCGCGAAATGCTGCGAGACAGATTTTGGCGCCGACACGTCG
AGGAGAAAAACGCCCAAGGGCTTCCAAGAAAGAGCGCGAGTAGATTTCGC
AGGGCATGTGGTTAGCTTCGCCTGGGGAGGCCGGGAGGTGGCTGGAGGTG
TGAGCCAAACGAGCGGTGTCGTTTTTTTTTCTTCGCTCATACGCGAAGTA
AAAAAAACTCCCCTACCACCGTTTTGCGTACTGTAGCAAAGCGACAATTC
CCGGACACGGACTGCTCTACGTTGGCGTGTTGGATTGAGGAGCGGTTTCT
TGTGTTGTCTGCGCAACGAACAAGGCTACAAATCACGCTGAACAGGTTTT
TGAGATGACGTAGCAAATTTGCAGCCGCAACCCGAGAAGGTACGAAAACA
CGAAAATACACTAATTTCAACATTTCTTGCCGTTCAGAGTGCGAATCAAA
ATTGTGAACAGCGTGATTTGTTGCTTATGTCCTGCAGACAGGTTCTGTAG
CGTAGGAAGAGCCATATTTCCGCCAGTGGCGAGCTTAGTGTCGGCAAATC
CTTGTCTAAAACCAAGTCAATTGTATATCTGTGTGCCCCCCTTGTTTAAA
AAACAAAACAAATCTATTCGCCCGCTGCCGTTTTCTTGGTGGCCGTTACA
GGGCTAAGGCCCAGGTCTAACTGTATTGTTTCGACTTGTCAAGATTGAAG
GACCTGCTTCCCTGCAAAACGCCGGCATCTCGCCACACAAAATTTGCCCT
TTGTTGCCTGAAGGGGCTTTGTGGCTTGAAGCCTCGTAGTCGTGGTGGGT
TCTTGTCAAGTCTCGGGCTAGTCGCCACGCGTCTTTCGCTATGGTTGCAG
GACACGAAAGGAGTCGGTGCGTGACTCATCCGCTGGCCGGAGTAGACTGT
ACTTATAAAAGGCTAGAATTGGCGCTTTTTTGAATAAATGTTCCTGAAAT
ATTTGAGTGCAACTTGCGTGTGAGCGGCGTGACATTGCATGCCCGTTTTC
CCGCGAAAATGCCTGGCTTGGCAGATAGCTCCTGGTCCGGTTCTGCAGCC
GCTGCTCGAGAGTGGTGCGTTACGCCGTGGTTGTGTGCCCACTTTTATAT
TTACGGTTTGGAAAACCGCACATGGAGTGTTTGGAGGTGTATTTTCACCA
GTTTGCCCCTCCTGTTGTTGCTGTTGATGCTGTTGCGTATGCGAAACTGT
CGTTGATGGTGGTAGCTTCTGGTGACAGCTTCAGACGGGCTGGCAGCGGC
TTGCGAGAGAGAAAGGAGCGCCGGACGCCTAAGGCTGGAGGCCTACAAAC
GCCAGAGTGGCGAAGAGATCTTGCACCTCGAGGGGGAGGGGAGGCGGCTG
AGAGCACAAGCGGCTATACTTCAGACGTGAGTGCTGGTTGCGGCGTGTGC
TGTTGCGGTCGTGACCGGCAAGGTAAAGGTTAAGGTTTGGTCGCGTTGTA
AGAAAAAGAGGGCGAGGGGTGCTTTCTCGCCAGCTGTATACGTGTCACTT
TGATCTGGAGGTAGGTGGGTCACCAAAACGCGAGAAAGCAACGGTCTCCT
TGCGTTGAATGCAGCTTTTTGTTCCGTCACGCTCTCGGGTGTTTGTCTTC
GTTGCCGGTGTTGGTTTCGACACTCGAATTTCGGGAACGACGTCAAGAGC
AATAAACTTGCCCATCTTCCCAAACAACTTGGTGCCCCTTTGAAAGCGTG
ACACAACTTCGCACCGCGTGCGTAAAAAAGGAGGAGCGCAGAGCAGTGTT
GGTAAGCATGCCGCCCCCAGTGTTCGTTCGCTGCATGCCCACTTTTTCGG
GCCTTGGCCACTTTCTTCGCAGCGCTAGCGCGTCTCTGGCCACGAAGGCG
GGCGTCCTCGGAGAGCGGCTGGCGGCGCTGCACGCTCGCACCTCCAGCGG
GTCCGGCGTGGCTCGCTGCCTATGCGCCTGGCGCGGGGAGGTGGCTCGGA
TAAAAGCGGAGCGCTCCAAGAACACCACCGCTGGAGACCATGCCAGGTGA
CGAGAACGTGGTGTATCGGCATCAGAGGGGAAGGGGGGGTCGCGTCTTTT
TCTTTGCTTGATTGTTCGGGTTGCGTTGAGCCGTTGTGAAGCCATGACGT
AGTGGAGGAGGACGAAGCCGACGAAGACGGGGCGGAGGACGAAATCACTC
CGGTGGCGGCCTGGGTTTCGTTTCATTCGGGTCATGGAATCAAAACGAGA
AAATCAGCTTTTTATAGAAAAAATATATCTACATTCGTCGAACAGCAGCG
CCCGCCGGTAAATGGTCTCTAGGAGGCGATAGCAGGGACTGCTTGGTAAG
TTTGAGTGTTCTCGACGAGGGCCGGGGTAACGATGAGGGGTGTGCGGCGT
TACAGATAGTCGTGGCAATCGTTGCTGTGGCCGCGGGCTACAGTGCATAA
ACGTTGTCCAGTTGGTACGCGTTGCCAATCAAATCCCGCCCCCCGTTCGC
GTCGTGCTATAATAGTGCTGTTTGACAGTACATGCAGGTATGCTATTTTT
GGTGGGACCACCAGAAAGCGTGAAGTGTCAATTGAGCACGTATTTCAAAT
GGCAGCAAATTGACATACTATCTGACTTGACCGTGCGCGCCCGCGGTGGT
CGCCGGGTATGCCCCCCTCGTTTTTGTTATGCCTTTTCACTGCTGTGTGT
GTACGAGGAGAATCGACGCAAGCTCCGTCCGCGTGTCGATGTCCTCACCC
GTGGTTTTCGGTTGGAAAGGCTAAGATTTGCCTCGACAGTTGGCTTGTAC
ACTCCTCTCTCCTCCCTCCTCCTCGCCTACGGTTGTCGTGGTTTTCTGGG
CTCACGGGCAGGCGCAAGTTGATTTCGTGCACCTTGAACGCTTGGCGCGT
GGAGGCGAGGTTGCGCATCGACAGCAGGGGCAGGAAGGCGGCAGACCAGA
GGCTGCACGCGATATCCAAGGAGATCATCGGTGAGCCATTATTAGCATTC
CCATGCCTTGGCCTTAGCCTTTTTCAAGACCGTTGGCGTTAAGTCGATTC
GGGTGGTGTTTTCGTCGATGCCGAGGGATTCGGTTGTTGGGTTGTGTCAG
CTTAAAAAATCACATGACTGCTGTTGCGGCTTGAGGCTCCAATCCAACAT
CTGCCCGAGGTTTTCATCGCGATCCGGCCAGCGACAAAGAAAAATAATGT
CGGCGGCTTTTGTGCCTGCGCGCGCTCCACCATTTTCCAGCACAATGCAG
CCATTTTCGTTTCTTGTGTGGCCTCCTTTTGTTGGTGTGCTTTTCCGGGA
AGCATCTCACCCCTTAACAGCTGCAGTCCGTTGGTTAGCTGAAGTCTGGC
ATCTCGGAACTCCGTGCAGAATTTTGTATTTTGTTTTTCGGCTGAGAGTT
GGTGTACACGGCAGCAAGCCCGAAGATTTGACGCCCGTTGTTGCGAGTTT
CTCGAACACGCCGAGGGGTTTAAGGCAATTAGCCCCTTCAGTTGTGTGAG
ACGTGCGGTTTGTTTTCGCGTTTGATGCCCGCACCCGGCTCCCGTCCTGT
CGGTTCGCCTCACCTCCGTTTTCTGCCTGATTATCCTGGCGCGCTCTGCT
ATCCTTTTGTCCCAACTCGATACTTTTGCTCGCGCACTGGGCCCATCCCT
TCGGCACGCCTCTTGCGTGTTTCTCCGTCGGGGCATTCGGTGTGAAGGGC
GCTATGAGGCGGAGCTGTCTAGCACCCGAGCAGCCCTGGACGACGCCGTC
AACCAGATTGCCTTGGTGAGATCCAGCTTTGATGAAATAATGGGGGTTGC
TGGTACCTTTCTGTGCTGCCGAGGCAGTCCATGGGCCAGTGAATGTTAAT
GTTTATGTCTGTTATTTGCGAAGGTGCGTTTTCCCCTCCGGCCTACCATG
TGCAGCCTTGGTGAGAGTCGTGTAGCGGTTTCAATTACGTGAACGCCCAC
AAGGGCAAGTTCCGCCTTGCCTTTTCACGCGAGTGCGCTAAGGCTCATCG
TGCGGTTATCCTGGCAGGCAGCCGGGAGGTAGGCTAGGCGGGTACATGAC
GCAATGCTATTACCCTCATCCATTAGGATGCTGTGCCAGGCGGCTACAAT
TTTGCCTGCTTTGTTTAGCCTTTCCGCGCACTTGCTTTACACCCACATTT
TGGTTTGTTGCAACGCTACAGTACACAGCTCAGTTCTATGTCCCACGACG
GAGCGTGTAGCGGTTCTCTTGTTAAGCCTCACATTGGCCAAGTGGCACCT
TTGCCATGGCCAAGTGGCATCTTTGCCGAATCGGGTGGCGCGTGGCGTAG
CGACCGCACCTTGCAGACGAGACGGATCGTCAGTGAAGGGGTCACTTGTC
TGATAGCTAAATGGCGTCGGTGTCGATTTGCCTGTGGGTAGCAGTTAGCT
TCTTCGTGATGATGTTATTGGCTCATTTTGTGTATCTCGCATCACGAAGC
TAACTGCTACCCACAGGCACGATCGACTCTGTTTGTGTATCTCGCGACTA
CAATTACGATATCTTGAGCGGTTGTTGAAATGATCTTGGGGCATTTGCGA
CGATGGGAAGATTATTACCCGCCAAGCTGATTAGTGTGTGTGTGTGTGTA
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTCGTCCCATTTATTTTG
GCGACAGTCCCTTTTCGATCAAGGTGAGACGTGTACTACACGTTGCGGTG
TATTTAGAGTACTACACTTGTTCAGTGTATTTTTCTGTAAAACTAGAATC
AACCGGGGTCACACAGGAGGTGGGGCTTTATTCTTCTTTTTTTTCTGTTT
CTTTTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTGTATTTTATCGCG
AGAAGGGTGCAGCCATCCCTTGGCCTCGTCAACGTGCTAAGTCGAAGTTT
GGTACTCACGAGCTTTTTTCAGCTATGTTATCGCTTTCACCTGCAAAGTC
GCAAAAGAAACACCTTTGCTTGGAATTGAACTCCAGGCTTTGCTGCTAGT
GGATTCGAGGTTAAACCACTAGTCCACCGGGGCGACCGAATACTGCCAAC
CTTGTTCAGTGGTTCGCCAACCTTACGATTGATTCCGACCGACGCTGATG
AATGATAAATGCGGCAGGAAAAAGCGCGGCAGAGGGAGATGGAGGAAGGG
ATGCGGCGTACTCTTCTGCGCGGCATGTCGGCGATGAACATGGAGGCGAT
GCGGCTTATGACCGAGGCCAGGTGAGGGTTGCGATACGCGTGATGCAGAC
CTGCGGGCACAACTAAGTTGGTGCCCCCTTCAGTAGCGCAGGGCCCCTGG
CACAGTTTGCCGTTCTTCAACCGTTTTAGGAGATTTAAATGCTTGGAAAG
GAAGGCGCCGCGGCTCACGAGGCTTGCGTGGGGGGCAGGAACTGTCCACC
TGTATAACCCAAGGTTCTTGCAGCCGGGGCTGTGTTTTTTGCTTCCTTCC
AACAGCGCAACGGGGTGCGTCATAAACATGAAAGGCCCCGCAGGTTGTGT
TGCTGGTTCGTTTTGCTTTGTTGTCGAGACCGTGATAATCCAGGACAGCA
GTGCCCGAGGGGTGTCACAAAGGGGTGGGGGCGAGGTCAGAGCACGTGCC
TCATTTTTTTCAGGCCCTTTTTCGTCTGTTGTAGATCTACGTTTGGTTTG
CTTTGTCGACCACCCAAGACTGTATGCATATGATCTACTCGTGCTGGTGT
TGGTTGCTGATGGTATTATAAGCACGGGTAGATTTCGACAGAGTTCACTT
GCTGCAGTCTCTGAGGAACATTCTGGTATAATAGTATGCGCCTCCGCTGC
CTGTTTTGCACTCAGGCCCGCCACCAGCTTTTTTTCTCAAGGTCTTAGAC
CAATTGCGCTGTATTCATGTCCCCTCGCCAGGGATGCTGGCCAAGAAGAA
TTTGGGCTCAGCGGAACGACAACCGGCACGAGGTACTCGGCCGTCGGAAC
TGACGCGTCGTATGCGCCCCGAGCTGCTGGAACCACCCAACACAGGTGTG
ACCTGCGTGGCCGATAGAACTGACGAAGTCGATACCATAGAATCGTGTGG
CGTGTGCGCCACCTATTGACGTTCCTCGTTCGACAGTTCAACTGCAGCAA
TCCCAGAACAGTTCGCTTTCGTGCCGCTAGTGTACCCTCGGCGGCAAGTC
GCCCAACAAGCCGGCATTGTTTCCCCCCACCGGAGGGCGGCCGTTCGTCT
GAATACTGTGTGAATCTTCGCGGCTGGCGTTATGTAACGCACCGGATCAT
TGTTTTGGTTGTTTGTTGTTGCACCGGCGAGAGGCTGAAGCACTTGGAGA
GGGAAGTCCATTTCGTAGCGCCTTTGGCAAATATGCGGTGATTTTGTGGT
GGCCGCTCTGTAGTGTGTGATTCCAACGGGATGCCGATCACGATGGCCTA
GGACTGCTGGCATTAGTGACAGCCTGCCCTCTTCAGAAAGCGATTGCTAA
CAAAATTCGACTCTGATAGCGGGAGAAGGGAGCAACCGCAGTTGCTCGAA
ACACTCGATGGGAGTGGTCGCAGATCTCAAACGGCCCGCCCATCGCTCTC
CACAAGCTAAACTATCTGATCCACCTGCTGCACCTCATCGTGGCATGTTA
AAAACGATGACACGCTCCCCATCCCTCCACCCACTTTTGCTGCCTCGCAG
AATGTCGGAAGAATGGCCACGGCCCTTGACGCCGCCGAGACCAGCTGCGC
CGTCGGCACGCTAACCTGCCAGGAAGCAGTTCCCGCATGCGTGTGGCTGG
GGACACACTGAGTGGGGGGGACAAGGAAAGGTTGACGTTACCGGCTAGAG
AAGCGACTATTATCTGCAGCTGTGTTCGACGTGGATGGAGGAGGGCACTT
GAGTTCTTTGGCTACCGGAACGGCTTTCTTCGCTAACTGCTAGGGTTTCC
TTCCGAAGCGCCTTGTATGTAGTATGTGTTTGTATGGTGGGTGGGGAAGG
CCCTTGTGTGAGATTGGGGGATGGAGCAGGGGTTGTTCGAGAACTGCGAA
TGCCTCGGACCTCGGATAGTAGGGTTTATTCGTATTTTTAGGTTGCAATG
ACGTTGGCATAGGAGTTTCTCGCGACCTTCCTTTTTGGACGCTTCTCAGC
TCGCCCACGCATACCTTGGTATCGCGGTTTGTGTCAAATCTCCGATTTTG
TACGGGTACCGACGACTGTGAGCTTCAAGTTCCTGGGCAAGAAGTACACG
TGTGCTGTACCAGCCCGGTACCTGTTGCAGCGACAAAGGAAAAGAGCAGT
GTGGTCAAGATGGGATGAAGGAAGTGTGCAGTGTTCAAAGGCTGAAGGTA
CTTCGTATTTTTCGAGTTCAGGTCTACCCCGTTGTATTCCACAAAGAAAG
AGGGTGAGAGTTCCAGTGTCACTCTGATGCGTGATGCTTTTACCCATTTC
CCCTTCCCCGTGCAAGTCGGACATGCGTCCTCGACAAAGGCGAAGGCGAG
GTCGAACCTCCACCTAGACCAAGGCTGTTTTGTTCTGGAGCTCTTGACTG
CGACTTGTATTTCGTCTCCGGTGTGCAGATAGAGAAAGGTGGAAAGGGCC
ACACGAACGGTTTGCCTCTTTCTGCAGGTTGGAGCCGGGCGATTTCGCGG
CGGGGTGTATGATGTCCAAGGTATTCAAGGTAGATCAGACTTGCCATCAG
GGAGTGCCCACTGCTTGTTTGTATCCGATGTTCTCTCGAAATGGTTCCGG
TGCTCTTTGTGTCTTCTTCCAAGAAATATACCGTTATCATGCGTGAGATG
GCATCGGGTGCGATCGGGGTTTAGAATATTATGTACTTTTTGTAATTTTT
TGCGCACCCTGGATGGTGCGATCTCAGCGGTGGGTGCCATCTCACGCATA
CCGGTGCAATAATGCAATGAGGTC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig82:627003..636326-

>mRNA_C-linearis_contig82.16013.1 ID=mRNA_C-linearis_contig82.16013.1|Name=mRNA_C-linearis_contig82.16013.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at C-linearis_contig82:627003..636326- (Chordaria linearis ClinC8C monoicous)
ATGGAGGAAGGGATGCGGCGTACTCTTCTGCGCGGCATGTCGGCGATGAA
CATGGAGGCGATGCGGCTTATGACCGAGGCCAGATGGAGGAAGGGATGCG
GCGTACTCTTCTGCGCGGCATGTCGGCGATGAACATGGAGGCGATGCGGC
TTATGACCGAGGCCAGGGATGCTGGCCAAGAAGAATTTGGGCTCAGCGGA
ACGACAACCGGCACGAGGTACTCGGCCGTCGGAACTGACGCGTCGTATGC
GCCCCGAGCTGCTGGAACCACCCAACACAGGGATGCTGGCCAAGAAGAAT
TTGGGCTCAGCGGAACGACAACCGGCACGAGGTACTCGGCCGTCGGAACT
GACGCGTCGTATGCGCCCCGAGCTGCTGGAACCACCCAACACAGAATGTC
GGAAGAATGGCCACGGCCCTTGACGCCGCCGAGACCAGCTGCGCCGTCGG
CACGCTAAAATGTCGGAAGAATGGCCACGGCCCTTGACGCCGCCGAGACC
AGCTGCGCCGTCGGCACGCTAA
back to top