mRNA_C-linearis_contig82.16012.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.16012.1
Unique NamemRNA_C-linearis_contig82.16012.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:550067..551606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1511
Cds size972
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16012.1prot_C-linearis_contig82.16012.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 550606..551606 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.2934427-UTR-C-linearis_contig82:550066..5506051622930607.2934427-UTR-C-linearis_contig82:550066..550605Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 550067..550605 +
1690881156.9883013-UTR-C-linearis_contig82:550066..5506051690881156.9883013-UTR-C-linearis_contig82:550066..550605Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 550067..550605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930607.3081403-CDS-C-linearis_contig82:550605..5508641622930607.3081403-CDS-C-linearis_contig82:550605..550864Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 550606..550864 +
1690881156.9974313-CDS-C-linearis_contig82:550605..5508641690881156.9974313-CDS-C-linearis_contig82:550605..550864Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 550606..550864 +
1622930607.3217716-CDS-C-linearis_contig82:550893..5516061622930607.3217716-CDS-C-linearis_contig82:550893..551606Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 550894..551606 +
1690881157.0062177-CDS-C-linearis_contig82:550893..5516061690881157.0062177-CDS-C-linearis_contig82:550893..551606Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 550894..551606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.16012.1

>prot_C-linearis_contig82.16012.1 ID=prot_C-linearis_contig82.16012.1|Name=mRNA_C-linearis_contig82.16012.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=324bp
MYGGEFKQPLDDVVWPECLEELFLGERFNQYIVSVVWPSHLKRLIFDGSE
FNQGLDGVAWAECLEQLHLGGSSTNPSRTQSGLHLSRFNQSLDGVVWPQR
LEQLNLGGAFNRPITGVVWPTSLEQLHLGRAFNQPITNIVWHSSMKRWAS
GGPAPCFRHKQPVMGSMRDHTILGGAFNQPIAGVAWPSFLKHLALGTNGI
FDQPLDGVVWPASLEELTLEAKFNQPIAGVVWPSSLRRLLLSGSFNHALD
GVVWSASLEELTLAKTFNQPIANVVWPSSLRRLVISGSFNHPLDGVAWPK
RLEELTFLGRKFNQPIANVVWPSS
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mRNA from alignment at C-linearis_contig82:550067..551606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.16012.1 ID=mRNA_C-linearis_contig82.16012.1|Name=mRNA_C-linearis_contig82.16012.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1540bp|location=Sequence derived from alignment at C-linearis_contig82:550067..551606+ (Chordaria linearis ClinC8C monoicous)
GCAGGGCGGGGTGTTTCAGCGCTCACGTCGACGCCGGAGGGTCTCGAACC
GGGAGAGAGGCAGGTAGTCGGCGTGGTGAAACGTTTCGAGAAGAGAACAA
GGTTCGACAAAAGAGGAAACTTGGCTAGGGTGGCGATGGGATTCTGCTGG
CGGAAGCTCTTCCGGCACCTTCGAAGGAAGGCGGTGAGAGCAGCGTTACC
GCGTCGTTGGGTGTGCTTCAAAGTCTCCATCTTTGGGTTAGATGAGGGAA
CGAGAGTTTTCCGCTTCAGGCACGACTTAAACGGGAGGATCGACAACACC
AGCTGGCCCTTTTCCCTCGTAACCCTGACCTTCGGGCGCGACTTCGATCA
ACCCATCCATAACGTTGTGTGGCCTTCCGCCCTTACATGTCTTCTCTTTG
ACGTGAGTATGGTGTTCAACCAACCGCTGGACAGAGTTGTGTGGCCGAAG
CGGTTGGAGGGTTGACCTTGGGGGCAAAGTTCAGTAAATCCATCGCCAAA
GTCGCGTGGCCTCCGTCTCTAAAGCGTTTGTCTTTCGGTATGTACGGAGG
AGAGTTCAAACAACCGCTAGACGATGTTGTATGGCCCGAATGCTTGGAGG
AGTTGTTCTTGGGGGAAAGGTTCAACCAATACATCGTCAGCGTGGTGTGG
CCTTCGCACCTCAAGCGCTTGATTTTCGATGGGTCGGAGTTCAACCAAGG
CCTCGACGGAGTTGCATGGGCAGAGTGCTTAGAACAGTTGCACCTAGGGG
GAAGTTCAACCAACCCATCACGAACGCAGAGTGGCCTTCATCTCTCAAGT
ACTTGAGTTTCGGCGGTCCGGGGGGAGGGTTCAACCAATCCCTAGACGGC
GTCGTATGGCCTCAACGTTTAGAGCAGTTGAATTTGGGGGGAGCATTTAA
CCGACCCATCACCGGAGTTGTTTGGCCAACGAGCTTAGAGCAGTTGCACC
TAGGGCGGGCGTTCAACCAACCCATCACCAACATAGTGTGGCATTCGTCC
ATGAAGCGTTGGGCATCCGGTGGGCCGGCCCCATGCTTCCGCCACAAGCA
GCCGGTTATGGGAAGCATGCGGGATCACACGATCTTGGGGGGGGCGTTCA
ACCAACCCATCGCCGGCGTCGCGTGGCCGTCGTTCCTAAAGCATCTGGCG
CTCGGCACGAACGGGATTTTCGATCAGCCGTTGGATGGGGTGGTGTGGCC
CGCAAGCCTAGAGGAGTTGACTTTAGAGGCAAAGTTCAACCAACCCATCG
CCGGCGTGGTGTGGCCTTCGTCTCTCAGACGTTTGTTGCTTTCGGGAAGC
TTCAATCATGCGCTGGACGGAGTTGTGTGGTCCGCAAGCCTAGAGGAGTT
GACTTTAGCGAAAACGTTCAACCAACCCATCGCCAACGTGGTGTGGCCTT
CGTCCCTCAGGCGGTTGGTGATTTCGGGAAGCTTCAACCACCCGCTCGAC
GGGGTTGCATGGCCGAAGCGCTTGGAGGAGTTGACCTTCTTAGGGAGAAA
GTTCAACCAACCCATCGCCAACGTGGTGTGGCCTTCGTCC
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Coding sequence (CDS) from alignment at C-linearis_contig82:550067..551606+

>mRNA_C-linearis_contig82.16012.1 ID=mRNA_C-linearis_contig82.16012.1|Name=mRNA_C-linearis_contig82.16012.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at C-linearis_contig82:550067..551606+ (Chordaria linearis ClinC8C monoicous)
ATGTACGGAGGAGAGTTCAAACAACCGCTAGACGATGTTGTATGGCCCGA
ATGCTTGGAGGAGTTGTTCTTGGGGGAAAGGTTCAACCAATACATCGTCA
GCGTGGTGTGGCCTTCGCACCTCAAGCGCTTGATTTTCGATGGGTCGGAG
TTCAACCAAGGCCTCGACGGAGTTGCATGGGCAGAGTGCTTAGAACAGTT
GCACCTAGGGGGAAGTTCAACCAACCCATCACGAACGCAGAGTGGCCTTC
ATCTCTCAAATGTACGGAGGAGAGTTCAAACAACCGCTAGACGATGTTGT
ATGGCCCGAATGCTTGGAGGAGTTGTTCTTGGGGGAAAGGTTCAACCAAT
ACATCGTCAGCGTGGTGTGGCCTTCGCACCTCAAGCGCTTGATTTTCGAT
GGGTCGGAGTTCAACCAAGGCCTCGACGGAGTTGCATGGGCAGAGTGCTT
AGAACAGTTGCACCTAGGGGGAAGTTCAACCAACCCATCACGAACGCAGA
GTGGCCTTCATCTCTCAAGGTTCAACCAATCCCTAGACGGCGTCGTATGG
CCTCAACGTTTAGAGCAGTTGAATTTGGGGGGAGCATTTAACCGACCCAT
CACCGGAGTTGTTTGGCCAACGAGCTTAGAGCAGTTGCACCTAGGGCGGG
CGTTCAACCAACCCATCACCAACATAGTGTGGCATTCGTCCATGAAGCGT
TGGGCATCCGGTGGGCCGGCCCCATGCTTCCGCCACAAGCAGCCGGTTAT
GGGAAGCATGCGGGATCACACGATCTTGGGGGGGGCGTTCAACCAACCCA
TCGCCGGCGTCGCGTGGCCGTCGTTCCTAAAGCATCTGGCGCTCGGCACG
AACGGGATTTTCGATCAGCCGTTGGATGGGGTGGTGTGGCCCGCAAGCCT
AGAGGAGTTGACTTTAGAGGCAAAGTTCAACCAACCCATCGCCGGCGTGG
TGTGGCCTTCGTCTCTCAGACGTTTGTTGCTTTCGGGAAGCTTCAATCAT
GCGCTGGACGGAGTTGTGTGGTCCGCAAGCCTAGAGGAGTTGACTTTAGC
GAAAACGTTCAACCAACCCATCGCCAACGTGGTGTGGCCTTCGTCCCTCA
GGCGGTTGGTGATTTCGGGAAGCTTCAACCACCCGCTCGACGGGGTTGCA
TGGCCGAAGCGCTTGGAGGAGTTGACCTTCTTAGGGAGAAAGTTCAACCA
ACCCATCGCCAACGTGGTGTGGCCTTCGTCCGGTTCAACCAATCCCTAGA
CGGCGTCGTATGGCCTCAACGTTTAGAGCAGTTGAATTTGGGGGGAGCAT
TTAACCGACCCATCACCGGAGTTGTTTGGCCAACGAGCTTAGAGCAGTTG
CACCTAGGGCGGGCGTTCAACCAACCCATCACCAACATAGTGTGGCATTC
GTCCATGAAGCGTTGGGCATCCGGTGGGCCGGCCCCATGCTTCCGCCACA
AGCAGCCGGTTATGGGAAGCATGCGGGATCACACGATCTTGGGGGGGGCG
TTCAACCAACCCATCGCCGGCGTCGCGTGGCCGTCGTTCCTAAAGCATCT
GGCGCTCGGCACGAACGGGATTTTCGATCAGCCGTTGGATGGGGTGGTGT
GGCCCGCAAGCCTAGAGGAGTTGACTTTAGAGGCAAAGTTCAACCAACCC
ATCGCCGGCGTGGTGTGGCCTTCGTCTCTCAGACGTTTGTTGCTTTCGGG
AAGCTTCAATCATGCGCTGGACGGAGTTGTGTGGTCCGCAAGCCTAGAGG
AGTTGACTTTAGCGAAAACGTTCAACCAACCCATCGCCAACGTGGTGTGG
CCTTCGTCCCTCAGGCGGTTGGTGATTTCGGGAAGCTTCAACCACCCGCT
CGACGGGGTTGCATGGCCGAAGCGCTTGGAGGAGTTGACCTTCTTAGGGA
GAAAGTTCAACCAACCCATCGCCAACGTGGTGTGGCCTTCGTCC
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