mRNA_C-linearis_contig82.16011.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.16011.1
Unique NamemRNA_C-linearis_contig82.16011.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:547566..548108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size543
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16011.1prot_C-linearis_contig82.16011.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 547592..548047 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930608.2540913-UTR-C-linearis_contig82:547565..5475911622930608.2540913-UTR-C-linearis_contig82:547565..547591Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 547566..547591 +
1690881157.3186972-UTR-C-linearis_contig82:547565..5475911690881157.3186972-UTR-C-linearis_contig82:547565..547591Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 547566..547591 +
1622930608.2821653-UTR-C-linearis_contig82:548047..5481081622930608.2821653-UTR-C-linearis_contig82:548047..548108Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 548048..548108 +
1690881157.3403308-UTR-C-linearis_contig82:548047..5481081690881157.3403308-UTR-C-linearis_contig82:548047..548108Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 548048..548108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930608.2684877-CDS-C-linearis_contig82:547591..5480471622930608.2684877-CDS-C-linearis_contig82:547591..548047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 547592..548047 +
1690881157.3284414-CDS-C-linearis_contig82:547591..5480471690881157.3284414-CDS-C-linearis_contig82:547591..548047Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 547592..548047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.16011.1

>prot_C-linearis_contig82.16011.1 ID=prot_C-linearis_contig82.16011.1|Name=mRNA_C-linearis_contig82.16011.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=152bp
MLISTTQNDGLVARKQRRVFTFVRVVLLSLRFPECAPGRPAIGLRWRMPD
GEQRVGLGGAHGYMRYEHVSTNGAHGVQSILRTWPASPVSHHPTFLQNVS
VQSSDRSADCRTEATAVSAGQLLLLGWDCTVVFSAAVRQQKSCGGLRSLH
T*
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mRNA from alignment at C-linearis_contig82:547566..548108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.16011.1 ID=mRNA_C-linearis_contig82.16011.1|Name=mRNA_C-linearis_contig82.16011.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=543bp|location=Sequence derived from alignment at C-linearis_contig82:547566..548108+ (Chordaria linearis ClinC8C monoicous)
GGGGGTCGTGACTCACGTCGCACGCTATGTTGATTTCAACGACGCAAAAT
GACGGATTGGTAGCTCGCAAGCAAAGGAGGGTTTTTACGTTCGTTCGGGT
GGTGCTTTTGTCTTTAAGGTTTCCAGAGTGTGCCCCTGGGCGGCCTGCCA
TAGGTTTGCGTTGGCGGATGCCCGATGGAGAGCAGCGGGTGGGGTTGGGT
GGGGCACACGGGTACATGCGATACGAGCACGTGTCCACTAATGGTGCGCA
CGGAGTACAGAGTATCTTGAGGACATGGCCCGCGTCGCCGGTGTCCCACC
ACCCAACATTTTTGCAAAACGTATCCGTCCAGAGTAGCGATCGATCTGCT
GATTGCCGCACAGAAGCCACAGCTGTGAGCGCTGGGCAACTGCTTTTACT
CGGATGGGATTGCACGGTAGTCTTTTCTGCTGCTGTTCGACAGCAAAAGT
CGTGCGGTGGGCTGCGTTCCCTCCACACGTAGGTGTGTACTCTAAAGGTC
ACTCTCAGAAAGGGATGCACAACAAGTTTCAAGGGAAAACCAC
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Coding sequence (CDS) from alignment at C-linearis_contig82:547566..548108+

>mRNA_C-linearis_contig82.16011.1 ID=mRNA_C-linearis_contig82.16011.1|Name=mRNA_C-linearis_contig82.16011.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at C-linearis_contig82:547566..548108+ (Chordaria linearis ClinC8C monoicous)
ATGTTGATTTCAACGACGCAAAATGACGGATTGGTAGCTCGCAAGCAAAG
GAGGGTTTTTACGTTCGTTCGGGTGGTGCTTTTGTCTTTAAGGTTTCCAG
AGTGTGCCCCTGGGCGGCCTGCCATAGGTTTGCGTTGGCGGATGCCCGAT
GGAGAGCAGCGGGTGGGGTTGGGTGGGGCACACGGGTACATGCGATACGA
GCACGTGTCCACTAATGGTGCGCACGGAGTACAGAGTATCTTGAGGACAT
GGCCCGCGTCGCCGGTGTCCCACCACCCAACATTTTTGCAAAACGTATCC
GTCCAGAGTAGCGATCGATCTGCTGATTGCCGCACAGAAGCCACAGCTGT
GAGCGCTGGGCAACTGCTTTTACTCGGATGGGATTGCACGGTAGTCTTTT
CTGCTGCTGTTCGACAGCAAAAGTCGTGCGGTGGGCTGCGTTCCCTCCAC
ACGTAGATGTTGATTTCAACGACGCAAAATGACGGATTGGTAGCTCGCAA
GCAAAGGAGGGTTTTTACGTTCGTTCGGGTGGTGCTTTTGTCTTTAAGGT
TTCCAGAGTGTGCCCCTGGGCGGCCTGCCATAGGTTTGCGTTGGCGGATG
CCCGATGGAGAGCAGCGGGTGGGGTTGGGTGGGGCACACGGGTACATGCG
ATACGAGCACGTGTCCACTAATGGTGCGCACGGAGTACAGAGTATCTTGA
GGACATGGCCCGCGTCGCCGGTGTCCCACCACCCAACATTTTTGCAAAAC
GTATCCGTCCAGAGTAGCGATCGATCTGCTGATTGCCGCACAGAAGCCAC
AGCTGTGAGCGCTGGGCAACTGCTTTTACTCGGATGGGATTGCACGGTAG
TCTTTTCTGCTGCTGTTCGACAGCAAAAGTCGTGCGGTGGGCTGCGTTCC
CTCCACACGTAG
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