mRNA_C-linearis_contig82.16003.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.16003.1
Unique NamemRNA_C-linearis_contig82.16003.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig82.16003.1 vs. uniprot
Match: A0A6H5JE46_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE46_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 1.460e-74
Identity = 122/132 (92.42%), Postives = 130/132 (98.48%), Query Frame = 1 
Query: 5566 KVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEANDILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRKIPLYMCFVDLQKAYDSVDRELLWKVLARAGIPAEMIAVIRQFHDGMRARVRMDDG 5961
            KVLYKKG+R+NCNNFRGISLLSHVGK+LAKTITNRLSA+CEAN+ILPEEQCGFRPGRSTVCMLFVVRRLQELGRRR+IPLYMCF+DLQKAYDSVDRELLWKVLARAGIPAEMIAVIR+FH GMRARVR DDG
Sbjct:   37 KVLYKKGDRSNCNNFRGISLLSHVGKILAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPAEMIAVIRKFHVGMRARVRTDDG 168
[Close]
BLAST of mRNA_C-linearis_contig82.16003.1 vs. uniprot
Match: A0A6H5L5Y6_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y6_9PHAE)

HSP 1 Score: 254 bits (650), Expect = 2.160e-74
Identity = 121/132 (91.67%), Postives = 128/132 (96.97%), Query Frame = 1 
Query: 5566 KVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEANDILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRKIPLYMCFVDLQKAYDSVDRELLWKVLARAGIPAEMIAVIRQFHDGMRARVRMDDG 5961
            KVLYKKG+R NCNNFRGISLLSHVGK+LAKTITNRLSA+CEAN+ILPEEQCGFRPGRSTVCMLFVVRRLQELGRRR+IPLYMCF+DLQKAYDSVDRELLWKVLARAGIP EMIAVIR+FH GMRARVR DDG
Sbjct:   23 KVLYKKGDRTNCNNFRGISLLSHVGKILAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDG 154
[Close]
BLAST of mRNA_C-linearis_contig82.16003.1 vs. uniprot
Match: A0A6H5J6Q0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q0_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 1.760e-73
Identity = 121/132 (91.67%), Postives = 128/132 (96.97%), Query Frame = 1 
Query: 5566 KVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEANDILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRKIPLYMCFVDLQKAYDSVDRELLWKVLARAGIPAEMIAVIRQFHDGMRARVRMDDG 5961
            KVLYKKG+R+NCNN RGISLLSHVGKVLAKTITNRLSA+CEAN+ILPEEQCGFRPGRSTVCMLFVVRRLQELGRRR+IPLYMCF+DLQKAYDSVDRELLWKVLARAGIP EMIAVIR+FH GMRARVR DDG
Sbjct:   26 KVLYKKGDRSNCNNCRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDG 157
[Close]
BLAST of mRNA_C-linearis_contig82.16003.1 vs. uniprot
Match: A0A6H5KT29_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT29_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 2.330e-72
Identity = 120/132 (90.91%), Postives = 128/132 (96.97%), Query Frame = 1 
Query: 5566 KVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEANDILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRKIPLYMCFVDLQKAYDSVDRELLWKVLARAGIPAEMIAVIRQFHDGMRARVRMDDG 5961
            KVL KKG+R+NCNNFRGISLLSHVGK+LAKTITNRLSA+CEAN+ILPEEQCGFRPGRSTVCMLFVVRRLQELGRRR+IPLYMCF+DLQKAYDSVDRELLWKVLARAGIP EMIAVIR+FH GMRARVR DDG
Sbjct:   94 KVLNKKGDRSNCNNFRGISLLSHVGKILAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDG 225
[Close]
BLAST of mRNA_C-linearis_contig82.16003.1 vs. uniprot
Match: A0A6H5JFS8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFS8_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 2.340e-72
Identity = 121/132 (91.67%), Postives = 128/132 (96.97%), Query Frame = 1 
Query: 5566 KVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEANDILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRKIPLYMCFVDLQKAYDSVDRELLWKVLARAGIPAEMIAVIRQFHDGMRARVRMDDG 5961
            KVLYKKG+R NCNNFRGISLLSHVGK+LAKTITNRLSA+CEAN+ILPEEQCGFRPGRSTVCMLFVVRRLQELGRRR+IPLYMCF+DLQKAYDSVDRELLWKVLARAGIP EMIAVIR+FH GMRARVR DDG
Sbjct:  107 KVLYKKGDRPNCNNFRGISLLSHVGKILAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDG 238
[Close]
BLAST of mRNA_C-linearis_contig82.16003.1 vs. uniprot
Match: A0A6H5K615_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K615_9PHAE)

HSP 1 Score: 250 bits (639), Expect = 7.690e-72
Identity = 119/132 (90.15%), Postives = 126/132 (95.45%), Query Frame = 1 
Query: 5566 KVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEANDILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRKIPLYMCFVDLQKAYDSVDRELLWKVLARAGIPAEMIAVIRQFHDGMRARVRMDDG 5961
            KVLYKKG+R NCNNFR ISLLSHVGK+LAKTITNRLS +CEAN+ILPEEQCGFRPGRSTVCMLFVVRRLQELGRRR+IPLYMCF+DLQKAYDSVDRELLWKVLARAGIP EMIAVIR+FH GMRARVR DDG
Sbjct:   92 KVLYKKGDRTNCNNFRDISLLSHVGKILAKTITNRLSTFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDG 223
[Close]
BLAST of mRNA_C-linearis_contig82.16003.1 vs. uniprot
Match: A0A6H5K7X5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X5_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 1.780e-70
Identity = 121/132 (91.67%), Postives = 129/132 (97.73%), Query Frame = 1 
Query: 5566 KVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEANDILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRKIPLYMCFVDLQKAYDSVDRELLWKVLARAGIPAEMIAVIRQFHDGMRARVRMDDG 5961
            KVLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+ILPEEQCGFRPGRSTVCMLFVVRRLQELGRRR+IPLYMCF+DLQKAYDSVDRELLWKVLARAGIP EMIAVIR+FH GMRARVR DDG
Sbjct:   54 KVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDG 185
[Close]
BLAST of mRNA_C-linearis_contig82.16003.1 vs. uniprot
Match: A0A6H5J7A9_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A9_9PHAE)

HSP 1 Score: 243 bits (621), Expect = 1.500e-68
Identity = 117/132 (88.64%), Postives = 125/132 (94.70%), Query Frame = 1 
Query: 5566 KVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEANDILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRKIPLYMCFVDLQKAYDSVDRELLWKVLARAGIPAEMIAVIRQFHDGMRARVRMDDG 5961
            KVLYKKG R+NCNN+RGISLLSHVGKV  K ITNRLSA+CEAN+ILPEEQCGFRPGRSTV MLFVVRRLQELGRR+KIPLYMCFVDL KAYDSVDRE+LWKVLARAGIPA++I VIRQFHDGMRARVRMDDG
Sbjct:  146 KVLYKKGNRSNCNNYRGISLLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMLFVVRRLQELGRRKKIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDG 277
[Close]
BLAST of mRNA_C-linearis_contig82.16003.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 2.380e-68
Identity = 121/132 (91.67%), Postives = 129/132 (97.73%), Query Frame = 1 
Query: 5566 KVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEANDILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRKIPLYMCFVDLQKAYDSVDRELLWKVLARAGIPAEMIAVIRQFHDGMRARVRMDDG 5961
            KVLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+ILPEEQCGFRPGRSTVCMLFVVRRLQELGRRR+IPLYMCF+DLQKAYDSVDRELLWKVLARAGIP EMIAVIR+FH GMRARVR DDG
Sbjct:   81 KVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANEILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRRIPLYMCFIDLQKAYDSVDRELLWKVLARAGIPGEMIAVIRKFHVGMRARVRTDDG 212
[Close]
BLAST of mRNA_C-linearis_contig82.16003.1 vs. uniprot
Match: A0A6H5KVH0_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVH0_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 6.300e-68
Identity = 113/132 (85.61%), Postives = 125/132 (94.70%), Query Frame = 1 
Query: 5566 KVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEANDILPEEQCGFRPGRSTVCMLFVVRRLQELGRRRKIPLYMCFVDLQKAYDSVDRELLWKVLARAGIPAEMIAVIRQFHDGMRARVRMDDG 5961
            KVL KKGER+NCNN+RGI+LLSHVGKV  K ITNRLSA+CEAN+ILPEEQCGFRPGRSTV M+FVVRRLQELGRR+KIPLY+CFVDL KAYDSVD+E+LWKVLARAGIPA++I VIRQFHDGMRARVRMDDG
Sbjct:   18 KVLNKKGERSNCNNYRGIALLSHVGKVPIKIITNRLSAFCEANNILPEEQCGFRPGRSTVDMMFVVRRLQELGRRKKIPLYLCFVDLNKAYDSVDQEMLWKVLARAGIPAKLIEVIRQFHDGMRARVRMDDG 149
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.16003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JE46_9PHAE1.460e-7492.42Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L5Y6_9PHAE2.160e-7491.67Reverse transcriptase domain-containing protein (F... [more]
A0A6H5J6Q0_9PHAE1.760e-7391.67Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KT29_9PHAE2.330e-7290.91Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JFS8_9PHAE2.340e-7291.67Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K615_9PHAE7.690e-7290.15Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K7X5_9PHAE1.780e-7091.67Reverse transcriptase domain-containing protein n=... [more]
A0A6H5J7A9_9PHAE1.500e-6888.64Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE2.380e-6891.67Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KVH0_9PHAE6.300e-6885.61Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:408009..416638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score162.5
Seed ortholog evalue4.5e-37
Seed eggNOG ortholog1382304.JNIL01000001_gene1337
KEGG koko:K01066
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Carboxylesterase family
EggNOG OGs1TQHX@1239,4HCVF@91061,COG0657@1,COG0657@2
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-28_001060.2
COG Functional cat.I
Best tax levelBacilli
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons5
Model size5961
Cds size1371
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930612.3517065-UTR-C-linearis_contig82:408008..4084021622930612.3517065-UTR-C-linearis_contig82:408008..408402Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 408009..408402 +
1690881159.361691-UTR-C-linearis_contig82:408008..4084021690881159.361691-UTR-C-linearis_contig82:408008..408402Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 408009..408402 +
1622930612.4614856-UTR-C-linearis_contig82:412442..4166381622930612.4614856-UTR-C-linearis_contig82:412442..416638Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 412443..416638 +
1690881159.424701-UTR-C-linearis_contig82:412442..4166381690881159.424701-UTR-C-linearis_contig82:412442..416638Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 412443..416638 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930612.3651989-CDS-C-linearis_contig82:408402..4086101622930612.3651989-CDS-C-linearis_contig82:408402..408610Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 408403..408610 +
1690881159.3731492-CDS-C-linearis_contig82:408402..4086101690881159.3731492-CDS-C-linearis_contig82:408402..408610Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 408403..408610 +
1622930612.3844461-CDS-C-linearis_contig82:409214..4093481622930612.3844461-CDS-C-linearis_contig82:409214..409348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 409215..409348 +
1690881159.3828921-CDS-C-linearis_contig82:409214..4093481690881159.3828921-CDS-C-linearis_contig82:409214..409348Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 409215..409348 +
1622930612.4039152-CDS-C-linearis_contig82:410068..4101831622930612.4039152-CDS-C-linearis_contig82:410068..410183Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 410069..410183 +
1690881159.3929336-CDS-C-linearis_contig82:410068..4101831690881159.3929336-CDS-C-linearis_contig82:410068..410183Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 410069..410183 +
1622930612.420464-CDS-C-linearis_contig82:410400..4105561622930612.420464-CDS-C-linearis_contig82:410400..410556Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 410401..410556 +
1690881159.4038336-CDS-C-linearis_contig82:410400..4105561690881159.4038336-CDS-C-linearis_contig82:410400..410556Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 410401..410556 +
1622930612.4399304-CDS-C-linearis_contig82:411684..4124421622930612.4399304-CDS-C-linearis_contig82:411684..412442Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 411685..412442 +
1690881159.414005-CDS-C-linearis_contig82:411684..4124421690881159.414005-CDS-C-linearis_contig82:411684..412442Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 411685..412442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.16003.1prot_C-linearis_contig82.16003.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 408403..412442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.16003.1

>prot_C-linearis_contig82.16003.1 ID=prot_C-linearis_contig82.16003.1|Name=mRNA_C-linearis_contig82.16003.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=457bp
MEGTLHLPHRPPDDDVLGVAGGGGFCWSVQVHDVTLPVKGGEVPLRIYVP
HTSTAGRAHAYKGVLLWLHGGGWILGSVDSYDALARDVAEASRMIVVSVG
YRKAPEVQFPGPVKDCLAAVKWARKNIWAFGGDRTRIALVGESSGGTLAM
ATAMLMSKSWIPFASRRSQLCAVVAASPPLSYEHAKEGPDGGDGGWRSYK
RYETGYGLEAGQMKGYWDWYLRKDKDGQNPLASPVRAKKRLLKGLPPVLL
MRAEHEILWDEISEMGRNLADAGQEVVYLCGLDGRFFLCRCGVGLGVLEG
FCSSATYGSPWYLLHVSKLASCARSTRNVTLFRFLTVESVGSVSARTPTA
ATTRFIECTTGICTQVFARPAMVERGRIASLKILTFDVLFVWKQLAVCCI
LFTVHVIILYNTVMLCVFAVTAAAAAAVCLPFLHSLFLIFNFRPIGKVIF
HILNCG*
back to top

mRNA from alignment at C-linearis_contig82:408009..416638+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.16003.1 ID=mRNA_C-linearis_contig82.16003.1|Name=mRNA_C-linearis_contig82.16003.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=8630bp|location=Sequence derived from alignment at C-linearis_contig82:408009..416638+ (Chordaria linearis ClinC8C monoicous)
AGGGAAGTCTCTCTGCAGGTGTGGCTGCTTTCACGGTGCTTCGAAACGGC
CTACTTTCGGTCGGTGTTCCACCCCGAGTACTTGAAGGTGGAGCCCGGCC
AGACGGCCAGGGAGGCGCTGAGCGAGATGTATGTGGAGGCGGAGAAGCTG
ATGAGCATGGGGCCGAGGATGCTCCAAGAAGATATGGCGGAGGTGATGTG
ATGCGATGCGATGCGATGTCATGCGACGTGATGAGAACGGTGTTTTTGAC
CAGCATTCGCAAGATTCAAGATTCAAGATTCACGGGTCGTTACTGCCGCT
GTAGTACCCCAAACCCAACCCAACCCTCTGATGGCAGTTTGTTTCTAAAC
AGACTACATCACATACGAAGTACATAGGTAGCCTGCGTGCGGGCATGGAA
GGAACCCTCCACCTTCCTCATCGCCCCCCCGATGACGATGTTCTTGGCGT
CGCTGGCGGTGGCGGTTTTTGTTGGAGCGTACAGGTGCACGACGTGACCC
TGCCCGTCAAGGGGGGCGAGGTGCCTCTCAGGATCTACGTCCCCCACACC
AGCACGGCCGGCAGAGCTCACGCCTACAAGGGAGTCCTGCTCTGGCTGCA
CGGTGCGTGGAGTCTAGGCTCTGCTGATGATGACAGCCGACTGAAATACG
CGCAAAGATAGGGCAAGGTCGTTGTGCAGCTGGAGGACGGTACATAGCCG
AGATTCTGCGCCCATTTGTTGCTCGACCCGGCACAAACTTAAGGCCGTCT
ACCATCTGAACTAATGTTCACCCCACCCCCAGGCTGGTTATTTCGCTTAC
GGAGAGCCGATTTTTTTTTCCGGTTTTCACATGCGCACGCCGCTAAACAT
CCTGTTGTAGATTTTTGCTAACCGACCGACCAACGCGGCACTAGCATACG
CACACACTAAATATAAATACGAGCCGTATTTTAGTTCTGCTATTTTGTTC
CATGCCTTGTTTTGTTGCGTTTAGCCCCATTACCCCTGCTCCTTCCTCCC
CCCCTTTTCCCCTTTCCCCTTTCCCGCCCGGCGTGCTCTATGCGCTTGGC
CTCACGCAATGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTATCTATCTATCTATCTATCTCTCTCTCTCTTTCTTTCTGTGTCTGT
GTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTC
TTCCAGGCGGGGGTTGGATACTAGGGTCCGTGGACTCGTACGACGCGCTG
GCGAGAGACGTCGCGGAGGCTAGCCGGATGATTGTCGTGTCGGTCGGCTA
TCGCAAGGCTCCGGAGGTCCAGTTCCCAGGACCGGTCAAGGTGTGCGTCG
CGTCGACGCTGCTGTTGCTCTGCTCTGTTTTTCTCCCGTGCCATGTGCGG
TGTATTCGTTGGTTTCTGAAGTGTGTCTTCGTGCAGGCACGTTTGATTGT
TCTCGGCTTGCATATTTTCTCTAAGCCTACTACATACGGCAGCTAACAAA
GAAAGCACATCACGCTTCTGAGAAGAGGCTCTGTAGATGGGACCAGCGGG
GGGGCGAACGCACGCGCCGGCTCTTTTTCAGCTCTGTTTTGTGCTCCCGC
ATTTGTCTGGAAAAGCCGACTTGTTTTGCCCCCCGATCACCGTCGTCATG
CCGGATACTCCTCTGCCGCCTCTTGCCAAACACGTATGTATGTGCACCGC
GTGTTGCCTGCGTGGCATACTTGTTCCGCCTCTCTCTCTGTTTTCTGTAC
TGCTGATGTTGTACGAAATTATGAAATTATACTTCGAAGTATGGTGCTTA
TTTTTAATTTTTGTACCGAGAGTGCCGTATTCTTTGGGTGGGTGTCTTGG
AAATGTTTTCGGAGGCTTCCCCATCAAGATCTAGAACAAATGAGAAGAGA
CCTACCTCTGTTTACAAAATGCTCTCATATGCGTATTACACACGCATCAT
ACATGTTTTGGTTTTCTCGTTATTCGTCGTCACCTCGTCGCTTTCGGTTC
GTCGCGTAAACGAAGACTATCACTATTAACATTAACATCAACGTTGATGG
CTGACTGCAGGACTGCCTGGCGGCTGTGAAGTGGGCGAGGAAGAACATCT
GGGCGTTCGGCGGGGACCGCACACGGATAGCGCTCGTGGGGGAGTCGTCC
GGCGGGACCTTGGCGATGGCAACGGGTGAGACAAGAGCATGCATGCATGT
AACCGGTGAGGGTGCGCAGGTCATCGTCCCATCCCCTCTCCTCCCCCACC
CTGTATCGCCATTTTTTGTACTCATAGTATTGTAATGCCTTGCCCCATCA
CTCCTCCCATCGGGTTTGTTTTCCATGCCCCCGTCGTCTTCTGTCTCTCG
CCTGCTGTAAATCTCGCGGTCACACAAAAATCTTCGAACAAGCGATGCTG
ATGAGCAAGTCGTGGATACCGTTCGCCTCGAGGAGGAGCCAGCTGTGCGC
CGTCGTGGCCGCGTCTCCCCCCCTGAGCTACGAGCACGCCAAGGAGGGGC
CGGACGGCGGAGACGGGGGGTGGCGGAGCTACAAGCGGTACGAGACCGGT
GAGGTTAGCTACGAGTTACGGTACAAGCGGTATGAGACCGGTGAGGCAGC
TACGAGTTACGGTACAAGCGGTATGAGACCGGTGAGGTCAGCTACGAGTT
ACGGTACAAGCGGTATGAGACCGGTGAGGCAGCTACGAGTTACGGTACAA
GCGGTATGAGACCGGTGAGGTCAGCTACGAGTTACGGTACACACACACAT
ACATGGTACAGCGGTAGATACGATGCGCGCGACGGAAAGATCGAGCGAAA
CACGAGCAGCGGGTAAGTTGGAGCGATCACAGACGCAGCAGTAGGCGGTG
CTGGAAGAGACGGCGAAAGGTTGTGTTCTAGGCAGAAATGCAACACGCCT
GGTGGTGCCTTAACGAAGAGCGACGCTCAGAGAGACGGCGGGGAGATGCA
GTCTAGTGTAGACTGCTGCTGTGTTGATGTTAGACGGCGGGGGCGTGGAA
TAGTGAGATGGGCCATATTGAATACCATATGTTCTCGGGTATAGGGTGCT
CTGTGGAAGGAGGAAGGAGGGGGTGCTTGGCCTCGGGGGAGGCGCACAAA
GCGAAGGGGCGAACGTTGCACATGGGAACCTCGTCACTCCGTAGTTCGTA
AAGACGCATTTATCAGCTGCAGCTAGCCAGCCACTCGAGGAGGTCAAGGC
GGGAGCTCAGAGTCCTCAGCCGGGGGTGCTTAAGCGGGGCGCCAATCGGT
TCGATCGAGAGGGACAGCTGATAGTGCATCGAGGGTAGCAAGGGCTTATT
CCACACTCTAGAACTTTTCCCCCCCCCCACCTATCCGGCTTTTGCCGTGT
TGTGCGTGGTTTGCGTCGCTCCGTTTGGGAGGGAGGTTTAATCTCCCAGC
GGGGAACTCGACGCGATCCACCACCCACACGTCTGGTGTTATCGACCCCA
AACGCGAGGGAGATCAGCCTTTTGGACGAGCTTCCGCGTAGATAGACTGA
CCCAAGACGGGTGTGGGCACATCGAATCACAACAACAGTAATACATAGCA
ACTATATCCACCACCCTCCCCCCTCTCCTGCCCCCTTTACCAACCAATCC
GTCCCCGCCCGCGCTTGCTTTCATTTTTCATTTTCGCCCGCCCTTGTCGA
CAATCTCTCTGTCAACTCAACCCAAGGCTACGGGTTGGAGGCCGGGCAGA
TGAAGGGCTACTGGGACTGGTACCTCCGAAAGGACAAGGACGGGCAGAAC
CCCTTGGCGTCCCCTGTGCGGGCGAAGAAGCGGCTGCTCAAGGGGCTCCC
GCCCGTGCTGCTGATGCGGGCGGAGCACGAGATCCTGTGGGACGAGATCT
CGGAGATGGGCAGGAACTTGGCGGATGCCGGCCAAGAGGTAGTGTACTTG
TGTGGATTGGATGGCCGTTTTTTTTTGTGTCGGTGTGGGGTAGGGCTTGG
TGTGCTTGAGGGATTTTGTTCAAGTGCGACATACGGCTCCCCGTGGTATC
TCTTGCATGTATCTAAGCTAGCTTCGTGCGCAAGATCGACGCGAAATGTA
ACCCTGTTTCGCTTTCTGACGGTTGAAAGTGTTGGAAGTGTCTCCGCTCG
AACACCCACTGCCGCCACTACGAGGTTTATTGAATGTACCACGGGCATTT
GTACACAGGTATTTGCAAGGCCTGCAATGGTTGAGCGAGGGAGAATCGCC
TCCTTGAAAATTTTGACTTTTGACGTTTTGTTCGTTTGGAAGCAGCTCGC
TGTATGCTGTATATTGTTTACCGTACATGTTATTATACTGTATAATACGG
TGATGCTCTGTGTGTTTGCTGTCACTGCTGCTGCTGCTGCTGCTGTCTGT
TTACCGTTTCTGCATTCTCTATTTTTAATTTTTAATTTTCGGCCAATAGG
CAAGGTAATATTCCATATTCTCAACTGCGGATGACAAAAACTAAAAAATA
GGAAACCAACAAGAGACATACCTGGTAAAAGATAAAAAGATAAAAGGCTT
ATCTGCCTCTCTCGTGCTGATGTCTAATGTGTAAATGGCTCCCATAGATC
GCACGACGCAAACGCACGTGGCAAAAAATAAAAAATAAAATACTCTAAAA
TACAGAATTACCTGTCAATGAGAAAACAGAGAGAGGACGGAAACAACATA
CGCGTACATTGAGCTGGTCCCGCACCCCGGTCGAAACAAAAAATGTAGTC
ACCGCAGCTCTCTGCGTCTTGCTCCATCAGATCAAAAAGGGTGGCCGGCT
AAACGAAACCGTAGCTATTGCGGATGTACTTGTAGCCCTTCTTCCGAAGA
CCTTATTTCGTGTGAAGTCGCACGCAAGAGGCTGCCTGGCGTATTGGCCT
GCTTCATTCGGATCGGGTGGTAGCCTTTCGAGGTGCAATTAAAACGGTAG
CTGCGAGATGAGTTGCGCTCCAGTTCGGAAGATAGTCGTGTCAACCAAGA
GTGAGCACGATACGAATATGTACCAAGCACGACCCAAGAGTAGGTTGTTG
GGATACAGTACACAAAAAAAGGGAATGTCGTGCACCACCTTAATTATCAT
TTTACCAAGAGTGCCATTTTGTGTGTTGATACTCTGTTAGGCCCGGGCCT
GACCCCCTAAATGCGCGTATTTCGTGGTATGATTATTCGTTGTTTTCCTT
AGAAGTTTCAAAAACAAAAAGTCAATCCGCTCTACCAGCCAACGACGCCA
AATCGTGTTTTGACTGGGTATTTAGACAGCCTCTTGGTATCGCAGATTAC
TCGCTCCCACCAAACAATTGGCTCTTCGCGTTCAGTCAGCACCTGTGGAC
AGGACAAACCGACACATTCCTAGTTCAGTATTTCCAACGGACTATGAAGA
GCCACCAAACAATCTAAAATCAAGTAATTTCGGCTTTTGTCAACAGCAGT
CTCGAACGTGTGTGACGTTTGCGAAAAACCGCAACTCCGAAAGCCTCTAG
CTTGCGTTTTCAAGGAGGGCGCACAACAATCCGCATCAGAATCCATCACG
CCGTCGTCTGTCAGTTTGTGTTCAAAAATAGGGTAGTGATGGGTAAAACG
TGGCCAAATTCCAAGCCCCCCAAAAAAATGACAGAGAGAAAACAAGAGCG
AAGGTTGCACGAGCAAAATGAGCAGTCGGTCGCGGAAACTGGCATGACCT
TGGGAGAAAGGTCGGGTGCAGCCAGGCACAAGGTCCTCCTGTTACGCCAG
GTCGCTAACGCATTGGAGCGCAGTCGCGACACAAAGCGAGCGGTGCGGGA
GCTGCAAGGGGATGGCGGGACAAAAAAGGGCGATCCCATCCGAGAAAAAG
TCATTTTTCGAAGATTTTTAGAGTCCCTGTCTCGTCTTCTTGCTCTTCGA
AGGCATGACAACTTGCCATTGCGAGTAGCCGCGAAGACAGAGCAGTATTC
TGTGCTCATGAGGATGCTCTCCATTCATCAGGAGCATCGCCAGAGAGGTT
GCTCGCAGGAAAACAAGTTGGTGCGATTTGGGGATTTGGGTTGGAAAACG
GAAAATTCGGTGTACAACCACCGGTATCCACCCGAAGCCGGGCACTACAA
CGTGTTTTGCTTTGAGCAACGTCTGTGGGGACACTCTTGATGAGTGGAGA
GCATCCTCATGACCACAGAAGACTTGTCTCTCCTCGTGGCTGCTTGTGGT
GCCACGGTGTCATGGCGTTACAAAGCAAAAGGATACGGGACACCAACTCG
AAAAAACAGTTCAAAAATGACTTTTTCGTGGTGGATTTGTCTATTTTTGC
CTCTCCATCTTCTCTCGCAGCTTATCGTGAAGGATCGGCCAGGGTCCACG
GCTTAACTTCGTCTATGTGGTACTGCTGTGGTATCCTTCTCTTGGCAAGG
GCGCAGTGTGGGTGTGAGAGAAGTGCTGCCGCTGTACCACGCGTTTGTGT
CCTCCCAAAGGTGCTGTAGCAGGAATTCGGCCGTGCGACGCATTTCCGGA
CTGGTCGACCGCAAAAAAAGTGGATTTTGTGTCATTTTTGTATGAGCATA
GACTATTCGAAAGAAGTTCCGCGGACACATTTTGTAGGTCAAAAGGGGGG
TAAGGCCCAGGCCTAACTCTACTTCGAAGTATGCCTCAGCTCGATCCTGA
CCCGTTCACTTGTTGCTGCACCAGGTTGTGGAAATCCAGGAAAAGGCGTG
CGTCCACGGGCTGTTCGCGAAGGGCTCGAGCTCTTGCGGGAAGGCTTCTT
TGCAGCACGCTGTCGACTTCCTCCATGAGCACTGCGCGTGACACAACAAC
GAAAAGCCTCGCAGGGGCCCCGCTGACAAGCCTCGGTCGGACCCAGCGGT
GACGTCAACGCGACCGTCACATAACCCAATGATGATGATGATGATGATGA
TGATGATGATGAGCGTCGGTGCGTAAAGGCGAAGAGCTAGACTCGCAGAG
ATGCGGTACAGCTTTGGTTGGCGTGGAAGGCAGGTTAGGATACGGCGTTA
CCCCCTCCCTCCCGTTGGCCACGAAGTCCCGAAGGAGCGGGCAAACCCAG
GGACACGACACGACACAGCTGGGATGGGGTTGGGATTGGGGTGGCGGAAG
ACGGGGAATGTTTTTGTTGGGTCCACCAAAGGAATCTCTTTTTCTGCAAG
GGTCTGCGGGGGCCAACGGGTTGTGGTTTTGTGTGGTGGGGGGTGAGGGA
GAGGGAGAGGGAGAGGGGGACGTCCAAGCTTCCTGCTCGTGCAAGACGAG
GCGAGGCCTGGGCGTGGCCAGGCCTGGGAGTGGCTACGCTTGCGCCGCGT
AGTGCTGTTGCACCATTTTACCAAGGTCCAGTCCAGCGTTTGTTTTTGGC
GCTCGGTGTGTGTTTTGTCGATGACGATGAGCAGGAGTGATGAGATTTGA
GATTTGGGTCGGGGGCGTTTTTTAGATGTGTCTTGTGTCTGTGTCTGTGT
CTGTGTCTGTTTCGCTGGGAACCAACCTTGTGCGAGACTCTCCACTCTTC
GCAAGATTCGAGTGTCGCGTCATGATGCCGGTAGGCTGTTTACTCGGCGT
TGTGTTGTGTTGTGTTTTGTTTCGGGATAGCTCAGGTGGTGGTGCTCCGG
TCTGCGTGGGTATTGTGTGCATTTGTGTTGGGTTGACTGCTTTCCTGGAT
TCTGTTAATGTTTCAGGCTCGGGTCTCTGGTGCACGCGTTGCAGGTGGGT
CGGTTGCTCTGAAAAAACAGGGATGTCACTTTCCGAGTACCAGCAGGGTG
CTGAACGGAAATTTCCGCTGTGCCCGGGGACAAAAACGTCCCATCCCCGG
GGTGGTATACAACGTACCAGTATATTTTTGATGTTTTGTTCGTTTGGAAA
GCAGCTCGCTGTACGTATGTATCCTGTATGCTGTATACTACGGTGATGCT
CTGTGTGTTTGCTGTCACTGCTGCTTGCTGCTGCGACCTACCTACCATTT
GTGCTCTCTGCTTGATACTTTACATCATAGAGTGCTGAACCCAGAGCGAA
TGGTGAAGAGGACATGAGGTCTTGGTGGTGGTCTTGTCTGCTGTCTGCTG
TCTGCTGTGTGGTTAGAGTATGGTCTGCTGTCTGCTGTATGGTCTGCTGG
TTGCTGCTGGGAGCTGAGAGGGGGCACATCAGATATGAGATAAGCCCCCC
CCCCGCCCCCTCCGGAGCCCCCCCCGGAAATACAAAAGTTTCCGCGGATT
ACCAGGGTACCTACGGCTGAACATAGTTTCCGGAAATTTCCGCTACCCGG
AATCTGACATCCCTGCTGAAAAACAGGTGGTGGTAAGGTGCTGTACAAGA
AGGGGGAGCGGGCCAACTGCAACAACTTCAGGGGCATCTCGTTGCTGTCG
CACGTAGGCAAGGTCCTCGCCAAGACTATCACCAACCGCCTGAGTGCATA
CTGCGAAGCCAACGACATCCTTCCGGAGGAGCAGTGCGGGTTCCGACCCG
GCCGATCCACGGTATGCATGCTGTTCGTGGTGCGCCGACTCCAGGAGTTA
GGGCGGAGGAGGAAGATACCGCTCTACATGTGCTTCGTCGACCTGCAGAA
GGCCTACGACTCGGTGGACAGAGAGCTGCTGTGGAAGGTGCTGGCCAGGG
CCGGGATTCCCGCGGAGATGATCGCCGTCATCCGCCAATTCCATGACGGG
ATGCGGGCCCGGGTGCGCATGGACGACGGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig82:408009..416638+

>mRNA_C-linearis_contig82.16003.1 ID=mRNA_C-linearis_contig82.16003.1|Name=mRNA_C-linearis_contig82.16003.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2742bp|location=Sequence derived from alignment at C-linearis_contig82:408009..416638+ (Chordaria linearis ClinC8C monoicous)
ATGGAAGGAACCCTCCACCTTCCTCATCGCCCCCCCGATGACGATGTTCT
TGGCGTCGCTGGCGGTGGCGGTTTTTGTTGGAGCGTACAGGTGCACGACG
TGACCCTGCCCGTCAAGGGGGGCGAGGTGCCTCTCAGGATCTACGTCCCC
CACACCAGCACGGCCGGCAGAGCTCACGCCTACAAGGGAGTCCTGCTCTG
GCTGCACGATGGAAGGAACCCTCCACCTTCCTCATCGCCCCCCCGATGAC
GATGTTCTTGGCGTCGCTGGCGGTGGCGGTTTTTGTTGGAGCGTACAGGT
GCACGACGTGACCCTGCCCGTCAAGGGGGGCGAGGTGCCTCTCAGGATCT
ACGTCCCCCACACCAGCACGGCCGGCAGAGCTCACGCCTACAAGGGAGTC
CTGCTCTGGCTGCACGGCGGGGGTTGGATACTAGGGTCCGTGGACTCGTA
CGACGCGCTGGCGAGAGACGTCGCGGAGGCTAGCCGGATGATTGTCGTGT
CGGTCGGCTATCGCAAGGCTCCGGAGGTCCAGTTCCCAGGACCGGTCAAG
GCGGGGGTTGGATACTAGGGTCCGTGGACTCGTACGACGCGCTGGCGAGA
GACGTCGCGGAGGCTAGCCGGATGATTGTCGTGTCGGTCGGCTATCGCAA
GGCTCCGGAGGTCCAGTTCCCAGGACCGGTCAAGGACTGCCTGGCGGCTG
TGAAGTGGGCGAGGAAGAACATCTGGGCGTTCGGCGGGGACCGCACACGG
ATAGCGCTCGTGGGGGAGTCGTCCGGCGGGACCTTGGCGATGGCAACGGG
ACTGCCTGGCGGCTGTGAAGTGGGCGAGGAAGAACATCTGGGCGTTCGGC
GGGGACCGCACACGGATAGCGCTCGTGGGGGAGTCGTCCGGCGGGACCTT
GGCGATGGCAACGGCGATGCTGATGAGCAAGTCGTGGATACCGTTCGCCT
CGAGGAGGAGCCAGCTGTGCGCCGTCGTGGCCGCGTCTCCCCCCCTGAGC
TACGAGCACGCCAAGGAGGGGCCGGACGGCGGAGACGGGGGGTGGCGGAG
CTACAAGCGGTACGAGACCGCGATGCTGATGAGCAAGTCGTGGATACCGT
TCGCCTCGAGGAGGAGCCAGCTGTGCGCCGTCGTGGCCGCGTCTCCCCCC
CTGAGCTACGAGCACGCCAAGGAGGGGCCGGACGGCGGAGACGGGGGGTG
GCGGAGCTACAAGCGGTACGAGACCGGCTACGGGTTGGAGGCCGGGCAGA
TGAAGGGCTACTGGGACTGGTACCTCCGAAAGGACAAGGACGGGCAGAAC
CCCTTGGCGTCCCCTGTGCGGGCGAAGAAGCGGCTGCTCAAGGGGCTCCC
GCCCGTGCTGCTGATGCGGGCGGAGCACGAGATCCTGTGGGACGAGATCT
CGGAGATGGGCAGGAACTTGGCGGATGCCGGCCAAGAGGTAGTGTACTTG
TGTGGATTGGATGGCCGTTTTTTTTTGTGTCGGTGTGGGGTAGGGCTTGG
TGTGCTTGAGGGATTTTGTTCAAGTGCGACATACGGCTCCCCGTGGTATC
TCTTGCATGTATCTAAGCTAGCTTCGTGCGCAAGATCGACGCGAAATGTA
ACCCTGTTTCGCTTTCTGACGGTTGAAAGTGTTGGAAGTGTCTCCGCTCG
AACACCCACTGCCGCCACTACGAGGTTTATTGAATGTACCACGGGCATTT
GTACACAGGTATTTGCAAGGCCTGCAATGGTTGAGCGAGGGAGAATCGCC
TCCTTGAAAATTTTGACTTTTGACGTTTTGTTCGTTTGGAAGCAGCTCGC
TGTATGCTGTATATTGTTTACCGTACATGTTATTATACTGTATAATACGG
TGATGCTCTGTGTGTTTGCTGTCACTGCTGCTGCTGCTGCTGCTGTCTGT
TTACCGTTTCTGCATTCTCTATTTTTAATTTTTAATTTTCGGCCAATAGG
CAAGGTAATATTCCATATTCTCAACTGCGGATGAGCTACGGGTTGGAGGC
CGGGCAGATGAAGGGCTACTGGGACTGGTACCTCCGAAAGGACAAGGACG
GGCAGAACCCCTTGGCGTCCCCTGTGCGGGCGAAGAAGCGGCTGCTCAAG
GGGCTCCCGCCCGTGCTGCTGATGCGGGCGGAGCACGAGATCCTGTGGGA
CGAGATCTCGGAGATGGGCAGGAACTTGGCGGATGCCGGCCAAGAGGTAG
TGTACTTGTGTGGATTGGATGGCCGTTTTTTTTTGTGTCGGTGTGGGGTA
GGGCTTGGTGTGCTTGAGGGATTTTGTTCAAGTGCGACATACGGCTCCCC
GTGGTATCTCTTGCATGTATCTAAGCTAGCTTCGTGCGCAAGATCGACGC
GAAATGTAACCCTGTTTCGCTTTCTGACGGTTGAAAGTGTTGGAAGTGTC
TCCGCTCGAACACCCACTGCCGCCACTACGAGGTTTATTGAATGTACCAC
GGGCATTTGTACACAGGTATTTGCAAGGCCTGCAATGGTTGAGCGAGGGA
GAATCGCCTCCTTGAAAATTTTGACTTTTGACGTTTTGTTCGTTTGGAAG
CAGCTCGCTGTATGCTGTATATTGTTTACCGTACATGTTATTATACTGTA
TAATACGGTGATGCTCTGTGTGTTTGCTGTCACTGCTGCTGCTGCTGCTG
CTGTCTGTTTACCGTTTCTGCATTCTCTATTTTTAATTTTTAATTTTCGG
CCAATAGGCAAGGTAATATTCCATATTCTCAACTGCGGATGA
back to top