mRNA_C-linearis_contig82.15997.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.15997.1
Unique NamemRNA_C-linearis_contig82.15997.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig82.15997.1 vs. uniprot
Match: B5LWK7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK7_9PHYC)

HSP 1 Score: 164 bits (414), Expect = 1.380e-48
Identity = 87/160 (54.37%), Postives = 115/160 (71.88%), Query Frame = 1 
Query:   28 GAARGSLFGLLGGLILGAAGSVVAPPIDYTEKFIWSNKFGRKSRFTHFDTVSILKEDLLKVFQHRNSNMDAFNEAFRNIQSAIMLYHPVKTDEEQAEVMTATWMTNFVIRASKAMEAIHVQVLVEDVVTASHFQKAMMNIQLSLEETINFVRLKIKNVLP 507
            G  RG LFG +GGLILGAAGS+ +       + +W+N+ GR  RFTH  ++  L++DL  VF HR    DAFNEAFRNIQ+ I +YHPVK +   A +M+AT MTNF +RASKA+ A+H ++L +D + A+ F+KAMM+IQLSLEE+I+FVRLK K  LP
Sbjct:    6 GVVRGGLFGFVGGLILGAAGSLSSNSESAEVELVWTNREGRTVRFTHLGSIPSLRDDLYTVFHHREFKRDAFNEAFRNIQNVISVYHPVK-EAAVANMMSATKMTNFGVRASKALGAMHDEILAKDPMKAAAFEKAMMSIQLSLEESIDFVRLKSKKSLP 164
[Close]
BLAST of mRNA_C-linearis_contig82.15997.1 vs. uniprot
Match: Q6XM43_9PHYC (FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM43_9PHYC)

HSP 1 Score: 144 bits (362), Expect = 1.490e-40
Identity = 78/171 (45.61%), Postives = 109/171 (63.74%), Query Frame = 1 
Query:    7 VSSRVLVGAARGSLFGLLGGLILGAAGSVVAPPIDYTEKFIWSNKFGRKSRFTHFDTVSILKEDLLKVFQHRNSNMDAFNEAFRNIQSAIMLYHPVKT----DEEQAEVMTATWMTNFVIRASKAMEAIHVQVLVEDVVTASHFQKAMMNIQLSLEETINFVRLKIKNVLP 507
            + S ++ G  +G L+GL GG+ LGAAG++   P    E+ +W+   G+K R  +   V  LK+ L  +FQHR  N  AFNEAFRNIQ+ + +YH   +    D +  ++M AT MTN+ +RASKAMEA+HV +L  D   A+ F++AMM IQL+LEE IN +RLK K  LP
Sbjct:    1 MESALMKGCFKGGLYGLCGGIFLGAAGALT--PSQTPEQLVWTTHQGKKVRLVYLHHVPGLKDHLTVIFQHRTRNERAFNEAFRNIQNVLSVYHLSSSSRTPDNDPPDIMAATKMTNYTVRASKAMEAVHVSILQSDFTKAAAFEEAMMKIQLTLEEKINEIRLKSKQSLP 169
[Close]
BLAST of mRNA_C-linearis_contig82.15997.1 vs. uniprot
Match: Q8QKW1_ESV1K (EsV-1-43 n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K)

HSP 1 Score: 102 bits (254), Expect = 2.490e-24
Identity = 58/173 (33.53%), Postives = 101/173 (58.38%), Query Frame = 1 
Query:    4 SVSSRVLVGAARGSLFGLLGGLILGAAGSVVAPPIDYTEKFIWSNKFGRKSRFTHFDTVSI--LKEDLLKVFQHRNSNMDAFNEAFRNIQSAIMLYHP-VKTDEEQAEVMTATWMTNFVIRASKAMEAIHVQVLVEDVVTASHFQKAMMNIQLSLEETINFVRLKIKNVLPKM 513
            + +S+   G ARG++FG+LGG +LGA G+V A  +   +   W ++ G   +F   + +    + +DLL +   R  +M+AFN+A R+IQS   LY   +   E++A +M    +TN+ I A+K+M A+ +    ++   +S  +K+MM + L+ EE IN VR   K++LP++
Sbjct:    4 NAASKAFGGGARGAMFGILGGFVLGAVGNVFADGLSTVDVVYWKDRRGTTKKFADLEVLESFDIYKDLLVIHSARECDMEAFNDACRHIQSVAYLYKRFLDKGEDKASIMDCRKITNYSIMATKSMNALLISCRAKNYPESSDVEKSMMQLHLTFEEIINGVRHVSKDILPEI 176
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
B5LWK7_9PHYC1.380e-4854.38Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XM43_9PHYC1.490e-4045.61FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a... [more]
Q8QKW1_ESV1K2.490e-2433.53EsV-1-43 n=2 Tax=root TaxID=1 RepID=Q8QKW1_ESV1K[more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:357770..358285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size516
Cds size516
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930611.6760714-CDS-C-linearis_contig82:357769..3582851622930611.6760714-CDS-C-linearis_contig82:357769..358285Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 357770..358285 +
1690881159.033687-CDS-C-linearis_contig82:357769..3582851690881159.033687-CDS-C-linearis_contig82:357769..358285Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 357770..358285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.15997.1prot_C-linearis_contig82.15997.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 357770..358285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.15997.1

>prot_C-linearis_contig82.15997.1 ID=prot_C-linearis_contig82.15997.1|Name=mRNA_C-linearis_contig82.15997.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=172bp
MSVSSRVLVGAARGSLFGLLGGLILGAAGSVVAPPIDYTEKFIWSNKFGR
KSRFTHFDTVSILKEDLLKVFQHRNSNMDAFNEAFRNIQSAIMLYHPVKT
DEEQAEVMTATWMTNFVIRASKAMEAIHVQVLVEDVVTASHFQKAMMNIQ
LSLEETINFVRLKIKNVLPKM*
back to top

mRNA from alignment at C-linearis_contig82:357770..358285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.15997.1 ID=mRNA_C-linearis_contig82.15997.1|Name=mRNA_C-linearis_contig82.15997.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=516bp|location=Sequence derived from alignment at C-linearis_contig82:357770..358285+ (Chordaria linearis ClinC8C monoicous)
ATGAGTGTTTCCTCCCGAGTCCTAGTCGGCGCCGCGAGGGGCAGCCTCTT
CGGGCTTCTGGGGGGTCTGATACTCGGGGCTGCCGGCAGCGTCGTTGCTC
CACCGATCGACTACACGGAGAAGTTCATTTGGTCGAACAAGTTTGGGAGG
AAAAGCCGATTTACCCACTTTGACACGGTTTCAATCTTGAAGGAGGATCT
CCTCAAGGTATTCCAGCACCGAAACTCGAACATGGACGCCTTTAACGAGG
CCTTCCGGAACATCCAGAGCGCCATCATGCTGTACCACCCGGTCAAAACC
GACGAGGAGCAGGCGGAGGTGATGACTGCCACGTGGATGACGAATTTCGT
CATACGAGCCTCTAAGGCGATGGAAGCCATCCACGTACAGGTCTTGGTGG
AAGATGTTGTCACGGCTTCCCACTTTCAGAAAGCGATGATGAACATCCAG
CTCTCCCTGGAGGAAACGATCAACTTCGTACGGCTCAAAATCAAGAACGT
TTTGCCCAAGATGTAA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig82:357770..358285+

>mRNA_C-linearis_contig82.15997.1 ID=mRNA_C-linearis_contig82.15997.1|Name=mRNA_C-linearis_contig82.15997.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at C-linearis_contig82:357770..358285+ (Chordaria linearis ClinC8C monoicous)
ATGAGTGTTTCCTCCCGAGTCCTAGTCGGCGCCGCGAGGGGCAGCCTCTT
CGGGCTTCTGGGGGGTCTGATACTCGGGGCTGCCGGCAGCGTCGTTGCTC
CACCGATCGACTACACGGAGAAGTTCATTTGGTCGAACAAGTTTGGGAGG
AAAAGCCGATTTACCCACTTTGACACGGTTTCAATCTTGAAGGAGGATCT
CCTCAAGGTATTCCAGCACCGAAACTCGAACATGGACGCCTTTAACGAGG
CCTTCCGGAACATCCAGAGCGCCATCATGCTGTACCACCCGGTCAAAACC
GACGAGGAGCAGGCGGAGGTGATGACTGCCACGTGGATGACGAATTTCGT
CATACGAGCCTCTAAGGCGATGGAAGCCATCCACGTACAGGTCTTGGTGG
AAGATGTTGTCACGGCTTCCCACTTTCAGAAAGCGATGATGAACATCCAG
CTCTCCCTGGAGGAAACGATCAACTTCGTACGGCTCAAAATCAAGAACGT
TTTGCCCAAGATGTAAATGAGTGTTTCCTCCCGAGTCCTAGTCGGCGCCG
CGAGGGGCAGCCTCTTCGGGCTTCTGGGGGGTCTGATACTCGGGGCTGCC
GGCAGCGTCGTTGCTCCACCGATCGACTACACGGAGAAGTTCATTTGGTC
GAACAAGTTTGGGAGGAAAAGCCGATTTACCCACTTTGACACGGTTTCAA
TCTTGAAGGAGGATCTCCTCAAGGTATTCCAGCACCGAAACTCGAACATG
GACGCCTTTAACGAGGCCTTCCGGAACATCCAGAGCGCCATCATGCTGTA
CCACCCGGTCAAAACCGACGAGGAGCAGGCGGAGGTGATGACTGCCACGT
GGATGACGAATTTCGTCATACGAGCCTCTAAGGCGATGGAAGCCATCCAC
GTACAGGTCTTGGTGGAAGATGTTGTCACGGCTTCCCACTTTCAGAAAGC
GATGATGAACATCCAGCTCTCCCTGGAGGAAACGATCAACTTCGTACGGC
TCAAAATCAAGAACGTTTTGCCCAAGATGTAA
back to top