mRNA_C-linearis_contig82.15996.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE) HSP 1 Score: 329 bits (844), Expect = 1.670e-108 Identity = 157/188 (83.51%), Postives = 170/188 (90.43%), Query Frame = 1
Query: 4 QVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTR 567
++LTALQILGRGNCFDDI QLSLMSK MAAATFH FCKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTIIRYDAGV+ IKT+ QY TYKLR+ADGTFRERKGCY IVDNGYHE +L P+ R
Sbjct: 250 KILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHEVNSLGHPNRMR 437
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 326 bits (835), Expect = 2.780e-108 Identity = 163/249 (65.46%), Postives = 186/249 (74.70%), Query Frame = 1
Query: 22 QILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLSPGRSRACARMSSASSVS*RTFQNPQAPSRVPLEKD--IDNIFFTCCILHNMLHTFDGMD 762
Q+LG+GNCFDD+ QLS MSKSMA TFH FC+HFA EMF+EHIYLPTGTY +VM ++ +LG TGA GSTDVTHIGW MCPFTLGRS+TGKEGFPTIAY VTVDH GR +A+T GFTG+TNDKTIIRYD+GVN I+T QY + YKLRKA+GT R R+GC+LIVDNGYHEWVTLIAPS P R+ A SV R+P K +DNIFFTCCILHNMLHTFDG+D
Sbjct: 42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKY---------PQRNEDTAFSRDLESVRKDVGCFRILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLD 281
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE) HSP 1 Score: 303 bits (776), Expect = 1.230e-100 Identity = 144/166 (86.75%), Postives = 155/166 (93.37%), Query Frame = 1
Query: 4 QVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKG 501
QVLTALQILGRGNCFDDI QLSLMSK MAAATFH FCKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTI+RYDAGV+ IKT+ QY TYKLR+ADGT+RERKG
Sbjct: 3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIMRYDAGVHTIKTDAQYTKRTYKLRRADGTYRERKG 168
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE) HSP 1 Score: 286 bits (733), Expect = 2.020e-95 Identity = 143/188 (76.06%), Postives = 152/188 (80.85%), Query Frame = 1
Query: 4 QVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTR 567
QVLT LQ LGRGNCFDDI QLSLMSK MAAATFH FCKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+G V+ IKT+ QY TYKLR ADGTFRERKGCYLIVDNGYHE +L P+ R
Sbjct: 3 QVLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSG----------------VHTIKTDAQYTKRTYKLRGADGTFRERKGCYLIVDNGYHEVNSLGHPNRMR 174
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE) HSP 1 Score: 280 bits (717), Expect = 2.100e-90 Identity = 147/251 (58.57%), Postives = 173/251 (68.92%), Query Frame = 1
Query: 19 LQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLS------PGRSRACARMSSASSVS*RTFQNPQAPSRVPLEKD--IDNIFFTCCILHNMLHT 747
L++LG+GNCFDD+ QLS MS+S+A A FH FC+H A EMF+EHIYLPTGTY +VM ++ +LG TGA GSTDVTHIG MCPFTLGRS+TGKEGFPTIAY+VTVDHAGR +A+T GF G TNDKT IRYD+GVN I+TE QY + YKLRK +GT R R+GC+LIVDNGY+E A S + R + GR R R+P K IDNIFFTCCILHNMLHT
Sbjct: 137 LKVLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYESNEDTAFSRHLESVRKDVECFFGILKGRFRILK-------------------LRMPYHKREYIDNIFFTCCILHNMLHT 368
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 279 bits (713), Expect = 2.320e-88 Identity = 142/259 (54.83%), Postives = 175/259 (67.57%), Query Frame = 1
Query: 1 LQVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLSPGRSRACARMSSASSVS*RTFQNPQAPSRV-----PLEK--DIDNIFFTCCILHNMLHTFDG 756
L+VL LQIL RGNCF DI +S +S AAATFH F ++FA+EM+ EHI+LPTG YQ VM YD+LG +GA GSTDVTHI WGMCP+ RSYTGKEG+PT+AYQVTVDH RV+A+T GFTGSTNDK+IIRYD V I+ + Y + + + +ADGT + KGCYL+VDNGYH+WVTLI PS + P+ R+ S F + R+ P K DIDN+FFTCCILHNMLH++D
Sbjct: 157 LKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPS------KYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDN 409
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE) HSP 1 Score: 276 bits (707), Expect = 2.890e-88 Identity = 144/250 (57.60%), Postives = 169/250 (67.60%), Query Frame = 1
Query: 19 LQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLSPGRSRACARMSSASSVS*RTFQNPQAPSRVPLEKD--IDNIFFTCCILHNMLHTFDGMD 762
L +LG+GNCFDD+ QLS MS SMA ATFH FC+HFA EMF+EHI+ PT TY + M ++ +LG TGA STDVTHI MCPFTLGRS+TGKEGFPTIAY+VTVDHA R +A+T GFTG+ NDKT+I YD+GVN I+TE QY + YKLRKA+GT R R+GC+ IVDNGYHE V + GR R R+P K IDNIFFTCCI HNMLHTFDG+D
Sbjct: 102 LTVLGKGNCFDDVEQLSKMSISMAQATFHKFCRHFAAEMFDEHIFSPTETYLDEFMGIFHQLGCTGACRSTDVTHIDCNMCPFTLGRSFTGKEGFPTIAYEVTVDHASRALAVTNGFTGAMNDKTVIWYDSGVNDIRTESQYTERQYKLRKANGTERTRRGCFSIVDNGYHEDVECFFG----------ILKGRFRILK-------------------LRMPYHKREYIDNIFFTCCIRHNMLHTFDGLD 322
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 267 bits (683), Expect = 8.680e-85 Identity = 136/258 (52.71%), Postives = 170/258 (65.89%), Query Frame = 1
Query: 4 QVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLSPGRSRACARMSSASS-------VS*RTFQNPQAPSRVPLEKDIDNIFFTCCILHNMLHTFDG 756
QVL LQIL RGN F DI +S +S A+TFH FCK+FA E+++E++YLPTG VM YD++G GA+GSTDVTHI WGMCP+ R YTGKEG PT+A+QVTVDH+GRV+A+T GFTG+TNDKTIIRYD V I+T+ Y + YKL DG E KGCYL+VDNGYH+W TLI PS + P+ G R+ SA + F+ + ++ IDN+FFTCCILHNMLH+FD
Sbjct: 83 QVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPS------KCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDN 334
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 267 bits (682), Expect = 1.570e-83 Identity = 136/259 (52.51%), Postives = 171/259 (66.02%), Query Frame = 1
Query: 1 LQVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLSPGRSRACARMSSASS-------VS*RTFQNPQAPSRVPLEKDIDNIFFTCCILHNMLHTFDG 756
L+VL LQIL RGN F DI +S +S A+TFH FCK+FA E+++E++YLPTG VM YD++G GA+GSTDVTHI WGMCP+ R YTGKEG PT+A+QVTVDH+GRV+A+T GFTG+TNDKTIIRYD V I+T+ Y + YKL DG E KGCYL+VDNGYH+W TLI PS + P+ G R+ SA + F+ + ++ IDN+FFTCCILHNMLH+FD
Sbjct: 173 LKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPS------KCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDN 425
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 262 bits (670), Expect = 4.940e-83 Identity = 137/262 (52.29%), Postives = 169/262 (64.50%), Query Frame = 1
Query: 4 QVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLSPGRSRACARMSSASS-------VS*RTFQNPQAPSRVPLEKDIDNIFFTCCILHNMLHTFDGMD 762
+VL L ILGRGNCF I Q+S MS FH FCKHFA+EM++EHIYLP+ + D VM YD+LG +GA+GS DVTHIGW CP+ L RSYTGKEG PT+ YQVTV+HAGR IA+T GFT STNDKT + +DA V I+T+ QY + T+ + DGT KGCYL+VDNGYH+W L+ P T+ PLS R+ S + F+ + ++ IDN+FFTCCILHNMLHTFDGMD
Sbjct: 98 KVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEP------TKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMD 353 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig82.15996.1 >prot_C-linearis_contig82.15996.1 ID=prot_C-linearis_contig82.15996.1|Name=mRNA_C-linearis_contig82.15996.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=191bp MSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIback to top mRNA from alignment at C-linearis_contig82:347965..349163- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig82.15996.1 ID=mRNA_C-linearis_contig82.15996.1|Name=mRNA_C-linearis_contig82.15996.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1199bp|location=Sequence derived from alignment at C-linearis_contig82:347965..349163- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig82:347965..349163- >mRNA_C-linearis_contig82.15996.1 ID=mRNA_C-linearis_contig82.15996.1|Name=mRNA_C-linearis_contig82.15996.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at C-linearis_contig82:347965..349163- (Chordaria linearis ClinC8C monoicous)back to top |