mRNA_C-linearis_contig82.15996.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.15996.1
Unique NamemRNA_C-linearis_contig82.15996.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 329 bits (844), Expect = 1.670e-108
Identity = 157/188 (83.51%), Postives = 170/188 (90.43%), Query Frame = 1
Query:    4 QVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTR 567
            ++LTALQILGRGNCFDDI QLSLMSK MAAATFH FCKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTIIRYDAGV+ IKT+ QY   TYKLR+ADGTFRERKGCY IVDNGYHE  +L  P+  R
Sbjct:  250 KILTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGTFRERKGCYYIVDNGYHEVNSLGHPNRMR 437          
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 326 bits (835), Expect = 2.780e-108
Identity = 163/249 (65.46%), Postives = 186/249 (74.70%), Query Frame = 1
Query:   22 QILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLSPGRSRACARMSSASSVS*RTFQNPQAPSRVPLEKD--IDNIFFTCCILHNMLHTFDGMD 762
            Q+LG+GNCFDD+ QLS MSKSMA  TFH FC+HFA EMF+EHIYLPTGTY  +VM ++ +LG TGA GSTDVTHIGW MCPFTLGRS+TGKEGFPTIAY VTVDH GR +A+T GFTG+TNDKTIIRYD+GVN I+T  QY +  YKLRKA+GT R R+GC+LIVDNGYHEWVTLIAPS           P R+   A      SV            R+P  K   +DNIFFTCCILHNMLHTFDG+D
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKY---------PQRNEDTAFSRDLESVRKDVGCFRILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLD 281          
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 303 bits (776), Expect = 1.230e-100
Identity = 144/166 (86.75%), Postives = 155/166 (93.37%), Query Frame = 1
Query:    4 QVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKG 501
            QVLTALQILGRGNCFDDI QLSLMSK MAAATFH FCKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+GFTG+TNDKTI+RYDAGV+ IKT+ QY   TYKLR+ADGT+RERKG
Sbjct:    3 QVLTALQILGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIMRYDAGVHTIKTDAQYTKRTYKLRRADGTYRERKG 168          
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5K6N4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6N4_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 2.020e-95
Identity = 143/188 (76.06%), Postives = 152/188 (80.85%), Query Frame = 1
Query:    4 QVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTR 567
            QVLT LQ LGRGNCFDDI QLSLMSK MAAATFH FCKHFAQE+FEEHIYLPTG+YQ +VM MYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGR IA+T+G                V+ IKT+ QY   TYKLR ADGTFRERKGCYLIVDNGYHE  +L  P+  R
Sbjct:    3 QVLTTLQTLGRGNCFDDICQLSLMSKPMAAATFHKFCKHFAQELFEEHIYLPTGSYQDEVMCMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSG----------------VHTIKTDAQYTKRTYKLRGADGTFRERKGCYLIVDNGYHEVNSLGHPNRMR 174          
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 2.100e-90
Identity = 147/251 (58.57%), Postives = 173/251 (68.92%), Query Frame = 1
Query:   19 LQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLS------PGRSRACARMSSASSVS*RTFQNPQAPSRVPLEKD--IDNIFFTCCILHNMLHT 747
            L++LG+GNCFDD+ QLS MS+S+A A FH FC+H A EMF+EHIYLPTGTY  +VM ++ +LG TGA GSTDVTHIG  MCPFTLGRS+TGKEGFPTIAY+VTVDHAGR +A+T GF G TNDKT IRYD+GVN I+TE QY +  YKLRK +GT R R+GC+LIVDNGY+E     A S    + R  +        GR R                       R+P  K   IDNIFFTCCILHNMLHT
Sbjct:  137 LKVLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYYESNEDTAFSRHLESVRKDVECFFGILKGRFRILK-------------------LRMPYHKREYIDNIFFTCCILHNMLHT 368          
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 279 bits (713), Expect = 2.320e-88
Identity = 142/259 (54.83%), Postives = 175/259 (67.57%), Query Frame = 1
Query:    1 LQVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLSPGRSRACARMSSASSVS*RTFQNPQAPSRV-----PLEK--DIDNIFFTCCILHNMLHTFDG 756
            L+VL  LQIL RGNCF DI  +S +S   AAATFH F ++FA+EM+ EHI+LPTG YQ  VM  YD+LG +GA GSTDVTHI WGMCP+   RSYTGKEG+PT+AYQVTVDH  RV+A+T GFTGSTNDK+IIRYD  V  I+ +  Y +  + + +ADGT  + KGCYL+VDNGYH+WVTLI PS      + P+         R+ S        F   +   R+     P  K  DIDN+FFTCCILHNMLH++D 
Sbjct:  157 LKVLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPS------KYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDN 409          
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 2.890e-88
Identity = 144/250 (57.60%), Postives = 169/250 (67.60%), Query Frame = 1
Query:   19 LQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLSPGRSRACARMSSASSVS*RTFQNPQAPSRVPLEKD--IDNIFFTCCILHNMLHTFDGMD 762
            L +LG+GNCFDD+ QLS MS SMA ATFH FC+HFA EMF+EHI+ PT TY  + M ++ +LG TGA  STDVTHI   MCPFTLGRS+TGKEGFPTIAY+VTVDHA R +A+T GFTG+ NDKT+I YD+GVN I+TE QY +  YKLRKA+GT R R+GC+ IVDNGYHE V               +  GR R                       R+P  K   IDNIFFTCCI HNMLHTFDG+D
Sbjct:  102 LTVLGKGNCFDDVEQLSKMSISMAQATFHKFCRHFAAEMFDEHIFSPTETYLDEFMGIFHQLGCTGACRSTDVTHIDCNMCPFTLGRSFTGKEGFPTIAYEVTVDHASRALAVTNGFTGAMNDKTVIWYDSGVNDIRTESQYTERQYKLRKANGTERTRRGCFSIVDNGYHEDVECFFG----------ILKGRFRILK-------------------LRMPYHKREYIDNIFFTCCIRHNMLHTFDGLD 322          
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 267 bits (683), Expect = 8.680e-85
Identity = 136/258 (52.71%), Postives = 170/258 (65.89%), Query Frame = 1
Query:    4 QVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLSPGRSRACARMSSASS-------VS*RTFQNPQAPSRVPLEKDIDNIFFTCCILHNMLHTFDG 756
            QVL  LQIL RGN F DI  +S +S    A+TFH FCK+FA E+++E++YLPTG     VM  YD++G  GA+GSTDVTHI WGMCP+   R YTGKEG PT+A+QVTVDH+GRV+A+T GFTG+TNDKTIIRYD  V  I+T+  Y +  YKL   DG   E KGCYL+VDNGYH+W TLI PS      + P+  G      R+ SA         +    F+  +       ++ IDN+FFTCCILHNMLH+FD 
Sbjct:   83 QVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPS------KCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDN 334          
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 1.570e-83
Identity = 136/259 (52.51%), Postives = 171/259 (66.02%), Query Frame = 1
Query:    1 LQVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLSPGRSRACARMSSASS-------VS*RTFQNPQAPSRVPLEKDIDNIFFTCCILHNMLHTFDG 756
            L+VL  LQIL RGN F DI  +S +S    A+TFH FCK+FA E+++E++YLPTG     VM  YD++G  GA+GSTDVTHI WGMCP+   R YTGKEG PT+A+QVTVDH+GRV+A+T GFTG+TNDKTIIRYD  V  I+T+  Y +  YKL   DG   E KGCYL+VDNGYH+W TLI PS      + P+  G      R+ SA         +    F+  +       ++ IDN+FFTCCILHNMLH+FD 
Sbjct:  173 LKVLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPS------KCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDN 425          
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 4.940e-83
Identity = 137/262 (52.29%), Postives = 169/262 (64.50%), Query Frame = 1
Query:    4 QVLTALQILGRGNCFDDILQLSLMSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTY-QAD-VMNMYDKLGMTGAIGSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFTGSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDNGYHEWVTLIAPSSTRRTTRTPLSPGRSRACARMSSASS-------VS*RTFQNPQAPSRVPLEKDIDNIFFTCCILHNMLHTFDGMD 762
            +VL  L ILGRGNCF  I Q+S MS       FH FCKHFA+EM++EHIYLP+    + D VM  YD+LG +GA+GS DVTHIGW  CP+ L RSYTGKEG PT+ YQVTV+HAGR IA+T GFT STNDKT + +DA V  I+T+ QY + T+ +   DGT    KGCYL+VDNGYH+W  L+ P      T+ PLS        R+ S          +    F+  +       ++ IDN+FFTCCILHNMLHTFDGMD
Sbjct:   98 KVLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEP------TKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMD 353          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCU6_9PHAE1.670e-10883.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE2.780e-10865.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE1.230e-10086.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6N4_9PHAE2.020e-9576.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE2.100e-9058.57DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JAU4_9PHAE2.320e-8854.83Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K872_9PHAE2.890e-8857.60DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KY50_9PHAE8.680e-8552.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.570e-8352.51Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE4.940e-8352.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:347965..349163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue6.1e-44
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size762
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.15996.1prot_C-linearis_contig82.15996.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 348082..349091 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930611.5609415-UTR-C-linearis_contig82:347964..3480811622930611.5609415-UTR-C-linearis_contig82:347964..348081Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 347965..348081 -
1690881158.98452-UTR-C-linearis_contig82:347964..3480811690881158.98452-UTR-C-linearis_contig82:347964..348081Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 347965..348081 -
1622930611.6240797-UTR-C-linearis_contig82:349091..3491631622930611.6240797-UTR-C-linearis_contig82:349091..349163Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 349092..349163 -
1690881159.0219963-UTR-C-linearis_contig82:349091..3491631690881159.0219963-UTR-C-linearis_contig82:349091..349163Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 349092..349163 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930611.5823317-CDS-C-linearis_contig82:348081..3481921622930611.5823317-CDS-C-linearis_contig82:348081..348192Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 348082..348192 -
1690881159.000573-CDS-C-linearis_contig82:348081..3481921690881159.000573-CDS-C-linearis_contig82:348081..348192Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 348082..348192 -
1622930611.602938-CDS-C-linearis_contig82:348629..3490911622930611.602938-CDS-C-linearis_contig82:348629..349091Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 348630..349091 -
1690881159.0106678-CDS-C-linearis_contig82:348629..3490911690881159.0106678-CDS-C-linearis_contig82:348629..349091Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 348630..349091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.15996.1

>prot_C-linearis_contig82.15996.1 ID=prot_C-linearis_contig82.15996.1|Name=mRNA_C-linearis_contig82.15996.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=191bp
MSKSMAAATFHNFCKHFAQEMFEEHIYLPTGTYQADVMNMYDKLGMTGAI
GSTDVTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRVIALTAGFT
GSTNDKTIIRYDAGVNAIKTEGQYKDCTYKLRKADGTFRERKGCYLIVDN
GYHEWVTLIAPSSTRRTTRTPLSPGRSRACARMSSASSVS*
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mRNA from alignment at C-linearis_contig82:347965..349163-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.15996.1 ID=mRNA_C-linearis_contig82.15996.1|Name=mRNA_C-linearis_contig82.15996.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1199bp|location=Sequence derived from alignment at C-linearis_contig82:347965..349163- (Chordaria linearis ClinC8C monoicous)
CTGCAGGTATTGACGGCCCTCCAGATACTGGGCAGGGGCAACTGCTTCGA CGACATCTTGCAGCTGTCGCTGATGAGCAAGTCCATGGCAGCCGCTACGT TCCACAACTTCTGCAAGCATTTTGCGCAGGAAATGTTCGAGGAGCACATC TACCTCCCTACCGGAACGTACCAGGCGGACGTCATGAACATGTACGACAA GCTCGGCATGACGGGGGCCATCGGATCTACCGACGTGACCCACATCGGGT GGGGCATGTGCCCTTTCACCCTTGGCCGTTCTTACACGGGCAAGGAAGGA TTCCCGACCATCGCCTACCAAGTGACAGTCGACCACGCAGGCCGAGTCAT CGCGCTCACCGCCGGTTTCACCGGCTCGACCAATGACAAGACCATCATCC GCTACGACGCCGGTGTGAACGCCATCAAGACGGAAGGCCAGTACAAGGAC TGCACGTACAAGCTCCGGAAGGCGGATGGGACTTTCCGTGAGCGCAAGGG GTGCTACCTGATCGTCGACAACGGGTACCACGAGGTAAATGCAGTTGGGC GCCCTTCGAGAAAGAGAGAGGCGATAGCCACGACGTTGAACATTTGAGGT ACAGCAGTAACCGTAAACATACCCCATAACGTAACCCCAAGTGTTATCTC TGTCGACGGTTATTGAAAAAGCTGGGTCGGTGCGTCGGGCGCGCGGTAGA ACTCTTTGCTGGCGTGTGTTCGGTACGTTTGTTCAACGTTTGGATGCAGA TATGTAGCAAGTGTTCACAGGAAGCCACTGGTCGGCCATAGATTAGGCGG AAAGCTCGTAGCCAATGGCGACCTCCTCCGGGTGCGAGGTTGCGGTTGGA TAATGTTATATCCGTGTGATTTTATTTTGTCAACCAAAGTCCGGAGCACG CAAGACCCGCCCTCTATTTACCCCCCACCATGTCGTTCGAAACCTCAACC GCTTTTTGCCCTCCCAAACAGTGGGTGACCCTCATTGCTCCCTCAAGTAC CCGGCGAACAACGAGGACACCGCTTTCTCCAGGACGCTCGAGAGCGTGCG CAAGGATGTCGAGTGCTTCTTCGGTATCTTGAAGGACGTTTCAGAATCCT CAAGCTCCGTCTAGGGTACCACTCGAAAAAGATATCGACAACATCTTCTT CACTTGCTGCATCCTGCACAACATGCTTCACACCTTCGACGGCATGGAC
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Coding sequence (CDS) from alignment at C-linearis_contig82:347965..349163-

>mRNA_C-linearis_contig82.15996.1 ID=mRNA_C-linearis_contig82.15996.1|Name=mRNA_C-linearis_contig82.15996.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at C-linearis_contig82:347965..349163- (Chordaria linearis ClinC8C monoicous)
ATGAGCAAGTCCATGGCAGCCGCTACGTTCCACAACTTCTGCAAGCATTT
TGCGCAGGAAATGTTCGAGGAGCACATCTACCTCCCTACCGGAACGTACC
AGGCGGACGTCATGAACATGTACGACAAGCTCGGCATGACGGGGGCCATC
GGATCTACCGACGTGACCCACATCGGGTGGGGCATGTGCCCTTTCACCCT
TGGCCGTTCTTACACGGGCAAGGAAGGATTCCCGACCATCGCCTACCAAG
TGACAGTCGACCACGCAGGCCGAGTCATCGCGCTCACCGCCGGTTTCACC
GGCTCGACCAATGACAAGACCATCATCCGCTACGACGCCGGTGTGAACGC
CATCAAGACGGAAGGCCAGTACAAGGACTGCACGTACAAGCTCCGGAAGG
CGGATGGGACTTTCCGTGAGCGCAAGGGGTGCTACCTGATCGTCGACAAC
GGGTACCACGAGATGAGCAAGTCCATGGCAGCCGCTACGTTCCACAACTT
CTGCAAGCATTTTGCGCAGGAAATGTTCGAGGAGCACATCTACCTCCCTA
CCGGAACGTACCAGGCGGACGTCATGAACATGTACGACAAGCTCGGCATG
ACGGGGGCCATCGGATCTACCGACGTGACCCACATCGGGTGGGGCATGTG
CCCTTTCACCCTTGGCCGTTCTTACACGGGCAAGGAAGGATTCCCGACCA
TCGCCTACCAAGTGACAGTCGACCACGCAGGCCGAGTCATCGCGCTCACC
GCCGGTTTCACCGGCTCGACCAATGACAAGACCATCATCCGCTACGACGC
CGGTGTGAACGCCATCAAGACGGAAGGCCAGTACAAGGACTGCACGTACA
AGCTCCGGAAGGCGGATGGGACTTTCCGTGAGCGCAAGGGGTGCTACCTG
ATCGTCGACAACGGGTACCACGAGTGGGTGACCCTCATTGCTCCCTCAAG
TACCCGGCGAACAACGAGGACACCGCTTTCTCCAGGACGCTCGAGAGCGT
GCGCAAGGATGTCGAGTGCTTCTTCGGTATCTTGATGGGTGACCCTCATT
GCTCCCTCAAGTACCCGGCGAACAACGAGGACACCGCTTTCTCCAGGACG
CTCGAGAGCGTGCGCAAGGATGTCGAGTGCTTCTTCGGTATCTTGA
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