mRNA_C-linearis_contig82.15995.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.15995.1
Unique NamemRNA_C-linearis_contig82.15995.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig82.15995.1 vs. uniprot
Match: Q6XM50_9PHYC (FirrV-1-A37 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM50_9PHYC)

HSP 1 Score: 154 bits (389), Expect = 3.380e-44
Identity = 90/188 (47.87%), Postives = 124/188 (65.96%), Query Frame = 1 
Query:    1 MSAYNAKSMEDAYGKMGDLQYRMVKGDDDEEKNLIPKGSKNESSLGLLESWLKKCSLRSHAHSVASIKCNMMYNTIWIPKLVTGGAAAALSFWATSDANGSSHEVRVAVAALSATETFLDALVRLFRLSEKEFQHRMASGMYSQLCRKIEVNVFSPSPETSVHNMNSLLAEVSVQFSNILTFSPHIRV 564
            MS Y+  +M++   KMG+L        DDE  ++  + + N+ SL LL++WL KCS+R+  H+  S++  ++   + IPKL  GGAA ALSFWATSD NGSSH VRV VA LSA  T L +L +  R  E  F+H+MASGMYSQLCRKIE+ VFS   +++    N  +AE++ +F+NI TFSP I+V
Sbjct:   13 MSVYDTSAMDETLKKMGELIQ------DDEYADV--EQNNNKRSLMLLKTWLTKCSIRARTHAKLSMRAGVLDVMLSIPKLFFGGAATALSFWATSDINGSSHGVRVLVATLSAVSTILASLGQFLRYDEARFRHQMASGMYSQLCRKIEMLVFSDFSDSTG---NRDVAEIAARFANIATFSPQIQV 189
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BLAST of mRNA_C-linearis_contig82.15995.1 vs. uniprot
Match: B5LWK1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK1_9PHYC)

HSP 1 Score: 147 bits (370), Expect = 1.300e-41
Identity = 77/146 (52.74%), Postives = 102/146 (69.86%), Query Frame = 1 
Query:  127 SSLGLLESWLKKCSLRSHAHSVASIKCNMMYNTIWIPKLVTGGAAAALSFWATSDANGSSHEVRVAVAALSATETFLDALVRLFRLSEKEFQHRMASGMYSQLCRKIEVNVFSPSPETSVHNMNSLLAEVSVQFSNILTFSPHIRV 564
            SS  L+ESWLKKCS R+H HS  S++       + +PKL  GGAA ALSFWATSD NGSSH VRV VA LSA  T L +L +  R  E +++H+MA+GMY+QLCR+IE++ FS   E  V++  ++LAE++  FSN+ TFSP I +
Sbjct:   25 SSRTLMESWLKKCSARAHEHSRESLRSGFANRMLSVPKLFFGGAATALSFWATSDLNGSSHRVRVLVAVLSAISTVLASLSQFLRYDESQYRHQMAAGMYTQLCRRIELSFFSED-EGGVND--AVLAEIAAGFSNVATFSPQINI 167
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q6XM50_9PHYC3.380e-4447.87FirrV-1-A37 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWK1_9PHYC1.300e-4152.74Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:327973..328548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size576
Cds size576
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930611.5108178-CDS-C-linearis_contig82:327972..3285481622930611.5108178-CDS-C-linearis_contig82:327972..328548Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 327973..328548 +
1690881158.973125-CDS-C-linearis_contig82:327972..3285481690881158.973125-CDS-C-linearis_contig82:327972..328548Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 327973..328548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.15995.1prot_C-linearis_contig82.15995.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 327973..328548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.15995.1

>prot_C-linearis_contig82.15995.1 ID=prot_C-linearis_contig82.15995.1|Name=mRNA_C-linearis_contig82.15995.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=192bp
MSAYNAKSMEDAYGKMGDLQYRMVKGDDDEEKNLIPKGSKNESSLGLLES
WLKKCSLRSHAHSVASIKCNMMYNTIWIPKLVTGGAAAALSFWATSDANG
SSHEVRVAVAALSATETFLDALVRLFRLSEKEFQHRMASGMYSQLCRKIE
VNVFSPSPETSVHNMNSLLAEVSVQFSNILTFSPHIRVRKM*
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mRNA from alignment at C-linearis_contig82:327973..328548+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.15995.1 ID=mRNA_C-linearis_contig82.15995.1|Name=mRNA_C-linearis_contig82.15995.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=576bp|location=Sequence derived from alignment at C-linearis_contig82:327973..328548+ (Chordaria linearis ClinC8C monoicous)
ATGTCAGCGTACAACGCAAAGTCAATGGAAGACGCTTATGGAAAGATGGG
TGACCTGCAGTACAGGATGGTGAAGGGCGACGACGACGAAGAGAAGAATC
TGATTCCGAAAGGATCGAAGAATGAGTCGTCACTAGGTCTTTTAGAGTCT
TGGTTGAAGAAGTGCAGCCTGAGGTCGCATGCCCATAGCGTGGCATCCAT
CAAATGCAATATGATGTACAACACGATTTGGATTCCAAAACTTGTGACTG
GAGGGGCCGCTGCAGCCCTGTCTTTCTGGGCGACGAGTGACGCAAACGGG
AGCTCACACGAGGTCCGTGTTGCTGTTGCCGCTTTGTCAGCGACAGAGAC
GTTTCTCGACGCTCTTGTCCGGCTTTTTCGTCTATCTGAGAAGGAATTCC
AACACAGAATGGCGTCTGGGATGTACTCCCAACTCTGCCGAAAAATTGAG
GTGAACGTATTTTCGCCGTCGCCGGAGACCTCGGTGCACAACATGAACTC
GCTGTTGGCGGAGGTTTCCGTCCAGTTTTCAAACATACTTACATTCAGTC
CGCACATCCGGGTTCGGAAAATGTAA
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Coding sequence (CDS) from alignment at C-linearis_contig82:327973..328548+

>mRNA_C-linearis_contig82.15995.1 ID=mRNA_C-linearis_contig82.15995.1|Name=mRNA_C-linearis_contig82.15995.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at C-linearis_contig82:327973..328548+ (Chordaria linearis ClinC8C monoicous)
ATGTCAGCGTACAACGCAAAGTCAATGGAAGACGCTTATGGAAAGATGGG
TGACCTGCAGTACAGGATGGTGAAGGGCGACGACGACGAAGAGAAGAATC
TGATTCCGAAAGGATCGAAGAATGAGTCGTCACTAGGTCTTTTAGAGTCT
TGGTTGAAGAAGTGCAGCCTGAGGTCGCATGCCCATAGCGTGGCATCCAT
CAAATGCAATATGATGTACAACACGATTTGGATTCCAAAACTTGTGACTG
GAGGGGCCGCTGCAGCCCTGTCTTTCTGGGCGACGAGTGACGCAAACGGG
AGCTCACACGAGGTCCGTGTTGCTGTTGCCGCTTTGTCAGCGACAGAGAC
GTTTCTCGACGCTCTTGTCCGGCTTTTTCGTCTATCTGAGAAGGAATTCC
AACACAGAATGGCGTCTGGGATGTACTCCCAACTCTGCCGAAAAATTGAG
GTGAACGTATTTTCGCCGTCGCCGGAGACCTCGGTGCACAACATGAACTC
GCTGTTGGCGGAGGTTTCCGTCCAGTTTTCAAACATACTTACATTCAGTC
CGCACATCCGGGTTCGGAAAATGTAAATGTCAGCGTACAACGCAAAGTCA
ATGGAAGACGCTTATGGAAAGATGGGTGACCTGCAGTACAGGATGGTGAA
GGGCGACGACGACGAAGAGAAGAATCTGATTCCGAAAGGATCGAAGAATG
AGTCGTCACTAGGTCTTTTAGAGTCTTGGTTGAAGAAGTGCAGCCTGAGG
TCGCATGCCCATAGCGTGGCATCCATCAAATGCAATATGATGTACAACAC
GATTTGGATTCCAAAACTTGTGACTGGAGGGGCCGCTGCAGCCCTGTCTT
TCTGGGCGACGAGTGACGCAAACGGGAGCTCACACGAGGTCCGTGTTGCT
GTTGCCGCTTTGTCAGCGACAGAGACGTTTCTCGACGCTCTTGTCCGGCT
TTTTCGTCTATCTGAGAAGGAATTCCAACACAGAATGGCGTCTGGGATGT
ACTCCCAACTCTGCCGAAAAATTGAGGTGAACGTATTTTCGCCGTCGCCG
GAGACCTCGGTGCACAACATGAACTCGCTGTTGGCGGAGGTTTCCGTCCA
GTTTTCAAACATACTTACATTCAGTCCGCACATCCGGGTTCGGAAAATGT
AA
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