mRNA_C-linearis_contig82.15993.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.15993.1
Unique NamemRNA_C-linearis_contig82.15993.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A1Q8IKH3_9NOCA (HNHc domain-containing protein n=2 Tax=Rhodococcus sp. M8 TaxID=1925550 RepID=A0A1Q8IKH3_9NOCA)

HSP 1 Score: 73.6 bits (179), Expect = 2.980e-14
Identity = 39/117 (33.33%), Postives = 67/117 (57.26%), Query Frame = 1
Query:    7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSK------SFKVNAERVREIRA-STDSGAKVAQVYGICAASVNNIRSRRTWS 336
            GYG+   +GR+ R H L+ E +H   +    +VR  CDN  C+NP HLQ+GTQ ++  D+++ G S       + K+   +V EI + S+++   +A+ YG+   ++  IR+ + WS
Sbjct:   20 GYGIIQIEGRRVRVHRLSYE-VHVGPIPDGMIVRHTCDNPPCLNPHHLQLGTQDDNMQDMKVRGRSSRGVARSNHKLTDRQVMEINSRSSETSKSLAREYGVSEWTIRGIRTGKRWS 135          
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A7L8YSI5_9CAUD (HNHc domain-containing protein n=4 Tax=root TaxID=1 RepID=A0A7L8YSI5_9CAUD)

HSP 1 Score: 69.3 bits (168), Expect = 1.500e-12
Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = 1
Query:    4 KGYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSK------SFKVNAERVREIRASTDSGAKVAQVYGICAASVNNIRSRRTW 333
            +GYG       K RAH LA E +    +    VVR  CDN  C++P+HL++GTQ ++  D    G         S K+  E VR+IR+S    + +A+ YG+   S+ NI  R+TW
Sbjct:   31 EGYGRIMVNRVKYRAHRLAYE-LANGPIPDGYVVRHKCDNPSCIDPSHLEVGTQADNIKDKVTRGRQALGCFVGSSKLTEESVRDIRSSDLKVSLLAERYGVSTVSIRNILRRKTW 145          
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A4V2ZZL4_9BURK (HNH endonuclease n=1 Tax=Paraburkholderia silviterrae TaxID=2528715 RepID=A0A4V2ZZL4_9BURK)

HSP 1 Score: 67.8 bits (164), Expect = 6.050e-12
Identity = 41/123 (33.33%), Postives = 63/123 (51.22%), Query Frame = 1
Query:    7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSK--------SFKVNAERVREIR------ASTDSGAKVAQVYGICAASVNNIRSRRTW 333
            GYGL   +G+   AH ++ E +H   +  ++ V   CDN +C+NPAHL +GT+ ++ HD+   G  +        + K   E V EIR      + TD    +A+ YG+   +V  I  RRTW
Sbjct:   28 GYGLVWHEGKNRLAHRVSFE-LHNSPITGTQDVMHSCDNRKCINPAHLSLGTRLDNMHDMIAKGRDRHPKGLHAGNVKATPEIVAEIRRRFKPYSRTDGSMALAREYGLSQGAVWAILERRTW 149          
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A345AQG7_9CAUD (Uncharacterized protein n=1 Tax=Escherichia phage Vec13 TaxID=2783859 RepID=A0A345AQG7_9CAUD)

HSP 1 Score: 67.0 bits (162), Expect = 7.740e-12
Identity = 42/115 (36.52%), Postives = 58/115 (50.43%), Query Frame = 1
Query:    7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSKSFKVNAERV------REIRASTDSGAKVAQVYGICAASVNNIRSRRTW 333
            GYG T   GRK R H L     H   +   +VVR  CDN +C N  HL++GT Q++  D    G S   + N   V       EIR S+ S  K+A+ YG+  ++V+ I+   TW
Sbjct:   15 GYGETRVDGRKVRVHRLEWTK-HYGPIPHDKVVRHKCDNPKCFNIEHLELGTTQDNTADRVSRGRSAKGEDNGNAVLTIDIVNEIRESSMSQRKIAKTYGVSQSTVSKIKRNVTW 128          
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A6M5C981_9CAUD (HNH endonuclease n=2 Tax=root TaxID=1 RepID=A0A6M5C981_9CAUD)

HSP 1 Score: 67.4 bits (163), Expect = 8.350e-12
Identity = 42/115 (36.52%), Postives = 59/115 (51.30%), Query Frame = 1
Query:    7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSKS------FKVNAERVREIRASTDSGAKVAQVYGICAASVNNIRSRRTW 333
            GYG       K  AH LA E +    +    VVR  CDN  C+NP+HL++GTQ ++  D    G   S       K+  E VR+IR+S    + +A+ YG+   S+ NI  R+TW
Sbjct:   32 GYGRIMINRVKHGAHRLAYE-LANGPIPDGYVVRHKCDNPSCINPSHLEVGTQADNIKDKVTRGRQASGCSIGVSKLTEEIVRDIRSSGLKVSLLAERYGVSTVSIRNILRRKTW 145          
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A658NS07_9ENTR (HNH endonuclease n=6 Tax=Enterobacterales TaxID=91347 RepID=A0A658NS07_9ENTR)

HSP 1 Score: 66.2 bits (160), Expect = 1.840e-11
Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 1
Query:  100 VVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSK--------SFKVNAERVREIRASTDSGAKVAQVYGICAASVNNIRSRRTW 333
            V+   CDN RC+NP HL++GTQ ++  D++L G +K        + K+  E V  IR+S  S  K+A VYG+  + +++IR R+ W
Sbjct:   50 VILHKCDNPRCINPKHLELGTQLDNVRDMELKGRAKHVTGEKNGAAKLTPEDVFAIRSSPLSNRKIAAVYGLSPSYISSIRLRKKW 135          
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A090UXA7_PSEVU (HNHc domain-containing protein n=2 Tax=Pseudescherichia vulneris TaxID=566 RepID=A0A090UXA7_PSEVU)

HSP 1 Score: 65.5 bits (158), Expect = 3.740e-11
Identity = 44/127 (34.65%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSE----VVRDLCDNSRCVNPAHLQIGTQQESAHD-------VQLHGSSKS-FKVNAERVREIRASTDSGAK------VAQVYGICAASVNNIRSRRTW 333
            GYG+ ++KG+  +AH LA      + +  SE    VVR  CDN  C+NP HL+IGTQ ++  D         L+G      K+ +E+V EIR     G+K      +A+ +G+C + V+ I  + TW
Sbjct:   15 GYGVRSYKGKVVKAHRLAY--CQSKGIELSEIDGLVVRHKCDNPPCINPEHLEIGTQLDNNRDRASRNRSAHLNGEKNGRAKLTSEQVEEIRRRYVRGSKDSNTVTLAKEFGVCQSHVSEIVRKITW 139          
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A2P9JZS3_9CAUD (HNH homing endonuclease n=1 Tax=Salmonella phage vB_SpuP_Spp16 TaxID=2081603 RepID=A0A2P9JZS3_9CAUD)

HSP 1 Score: 65.1 bits (157), Expect = 4.940e-11
Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 1
Query:    7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSE----VVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSK-SFKVNAERVREIRASTD------SGAKVAQVYGICAASVNNIRSRRTW 333
            GYG   FKG+   AH       H   L P +    VV   CDN RC+NP HL++GT +++  D+   G +K + K+++E VR IR          SG K+A ++G+   +++NI  R+ +
Sbjct:   15 GYGRLNFKGKLYSAHRTVYMRTHN--LEPEDIAGMVVMHKCDNPRCINPEHLELGTHKDNTQDMLTKGRNKPTRKLSSEEVRFIRKHYKFRDKEYSGVKLATMFGVDKTTISNIILRKCY 132          
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A386KLE5_9CAUD (HNHc domain-containing protein n=1 Tax=Acinetobacter phage vB_AbaP_46-62_Aci07 TaxID=2315468 RepID=A0A386KLE5_9CAUD)

HSP 1 Score: 65.1 bits (157), Expect = 6.120e-11
Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 1
Query:    4 KGYGLTTFKGRKTRAHVLAIESIHKRFLRP--SEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQ-------LHG-SSKSFKVNAERVREIRASTDSGAK------VAQVYGICAASVNNIRSRRTW 333
            +GYG   +KG+ T AH +A    +   L     +VVR  CDN  C+NP HL+IGTQQ++  D+        +HG  S + K+  + V+ IRA     ++      +A+ YGI    V++I + R+W
Sbjct:   18 RGYGRYRYKGKMTLAHRIAYCEANNVTLEDIKGKVVRHKCDNPVCINPDHLEIGTQQDNIKDMNDRGRQRNVHGMDSPNAKITDDVVKAIRAEYVKDSRKFGYSALARKYGISDVMVSHIANNRSW 143          
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A7G9IRE0_9CAUD (HNHc domain-containing protein n=1 Tax=Citrobacter phage NS1 TaxID=2766968 RepID=A0A7G9IRE0_9CAUD)

HSP 1 Score: 63.9 bits (154), Expect = 1.130e-10
Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSKSFKVNAERVREIRASTDSGAKVAQVYGICAASVNNIRSRRTW 333
            GYG     G K  AH L + + +   +    VVR  CDN  CVNP HL++GTQ+++ +D    G   + K++ ++VREIR    S   VA  YGI    V  +R+R+++
Sbjct:   15 GYGQIKKAGIKWLAHRL-VYTENFGPIPDGLVVRHKCDNRWCVNPEHLELGTQRDNINDCVTRGHHNNAKLSDQQVREIRKDKRSSRAVAADYGIDHKGVLAVRNRKSY 122          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Q8IKH3_9NOCA2.980e-1433.33HNHc domain-containing protein n=2 Tax=Rhodococcus... [more]
A0A7L8YSI5_9CAUD1.500e-1236.21HNHc domain-containing protein n=4 Tax=root TaxID=... [more]
A0A4V2ZZL4_9BURK6.050e-1233.33HNH endonuclease n=1 Tax=Paraburkholderia silviter... [more]
A0A345AQG7_9CAUD7.740e-1236.52Uncharacterized protein n=1 Tax=Escherichia phage ... [more]
A0A6M5C981_9CAUD8.350e-1236.52HNH endonuclease n=2 Tax=root TaxID=1 RepID=A0A6M5... [more]
A0A658NS07_9ENTR1.840e-1138.37HNH endonuclease n=6 Tax=Enterobacterales TaxID=91... [more]
A0A090UXA7_PSEVU3.740e-1134.65HNHc domain-containing protein n=2 Tax=Pseudescher... [more]
A0A2P9JZS3_9CAUD4.940e-1134.17HNH homing endonuclease n=1 Tax=Salmonella phage v... [more]
A0A386KLE5_9CAUD6.120e-1134.13HNHc domain-containing protein n=1 Tax=Acinetobact... [more]
A0A7G9IRE0_9CAUD1.130e-1036.70HNHc domain-containing protein n=1 Tax=Citrobacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:325060..325407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViruses
Seed ortholog score72.0
Seed ortholog evalue2e-10
Seed eggNOG ortholog1455075.W6PP19_9CAUD
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.HNH endonuclease
EggNOG OGs4QAIU@10239,4QNBQ@10744,4QPDE@28883,4QUQC@35237
COG Functional cat.S
Best tax levelPodoviridae
Best eggNOG OGNA|NA|NA
Exons1
Model size348
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930611.3616045-CDS-C-linearis_contig82:325059..3254071622930611.3616045-CDS-C-linearis_contig82:325059..325407Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 325060..325407 -
1690881158.9474776-CDS-C-linearis_contig82:325059..3254071690881158.9474776-CDS-C-linearis_contig82:325059..325407Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 325060..325407 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.15993.1prot_C-linearis_contig82.15993.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 325060..325407 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.15993.1

>prot_C-linearis_contig82.15993.1 ID=prot_C-linearis_contig82.15993.1|Name=mRNA_C-linearis_contig82.15993.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=116bp
LKGYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHL
QIGTQQESAHDVQLHGSSKSFKVNAERVREIRASTDSGAKVAQVYGICAA
SVNNIRSRRTWSVIP*
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mRNA from alignment at C-linearis_contig82:325060..325407-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.15993.1 ID=mRNA_C-linearis_contig82.15993.1|Name=mRNA_C-linearis_contig82.15993.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at C-linearis_contig82:325060..325407- (Chordaria linearis ClinC8C monoicous)
CTCAAAGGGTATGGTTTGACAACGTTTAAAGGTAGGAAAACACGAGCACA TGTGCTTGCAATAGAATCCATACACAAGCGGTTCTTGAGACCAAGCGAAG TGGTCAGAGATCTCTGTGATAATAGTCGTTGTGTAAACCCTGCGCATCTC CAAATTGGGACACAGCAAGAAAGTGCGCATGACGTACAACTCCACGGTTC GAGTAAGTCATTCAAAGTGAATGCTGAAAGGGTTAGGGAAATCAGGGCTT CGACGGATTCGGGTGCCAAGGTGGCACAAGTGTATGGTATTTGTGCAGCT TCAGTAAACAACATAAGGTCCAGGAGGACGTGGTCGGTAATACCTTGA
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Coding sequence (CDS) from alignment at C-linearis_contig82:325060..325407-

>mRNA_C-linearis_contig82.15993.1 ID=mRNA_C-linearis_contig82.15993.1|Name=mRNA_C-linearis_contig82.15993.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at C-linearis_contig82:325060..325407- (Chordaria linearis ClinC8C monoicous)
CTCAAAGGGTATGGTTTGACAACGTTTAAAGGTAGGAAAACACGAGCACA
TGTGCTTGCAATAGAATCCATACACAAGCGGTTCTTGAGACCAAGCGAAG
TGGTCAGAGATCTCTGTGATAATAGTCGTTGTGTAAACCCTGCGCATCTC
CAAATTGGGACACAGCAAGAAAGTGCGCATGACGTACAACTCCACGGTTC
GAGTAAGTCATTCAAAGTGAATGCTGAAAGGGTTAGGGAAATCAGGGCTT
CGACGGATTCGGGTGCCAAGGTGGCACAAGTGTATGGTATTTGTGCAGCT
TCAGTAAACAACATAAGGTCCAGGAGGACGTGGTCGGTAATACCTTGACT
CAAAGGGTATGGTTTGACAACGTTTAAAGGTAGGAAAACACGAGCACATG
TGCTTGCAATAGAATCCATACACAAGCGGTTCTTGAGACCAAGCGAAGTG
GTCAGAGATCTCTGTGATAATAGTCGTTGTGTAAACCCTGCGCATCTCCA
AATTGGGACACAGCAAGAAAGTGCGCATGACGTACAACTCCACGGTTCGA
GTAAGTCATTCAAAGTGAATGCTGAAAGGGTTAGGGAAATCAGGGCTTCG
ACGGATTCGGGTGCCAAGGTGGCACAAGTGTATGGTATTTGTGCAGCTTC
AGTAAACAACATAAGGTCCAGGAGGACGTGGTCGGTAATACCTTGA
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