mRNA_C-linearis_contig82.15993.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A1Q8IKH3_9NOCA (HNHc domain-containing protein n=2 Tax=Rhodococcus sp. M8 TaxID=1925550 RepID=A0A1Q8IKH3_9NOCA) HSP 1 Score: 73.6 bits (179), Expect = 2.980e-14 Identity = 39/117 (33.33%), Postives = 67/117 (57.26%), Query Frame = 1
Query: 7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSK------SFKVNAERVREIRA-STDSGAKVAQVYGICAASVNNIRSRRTWS 336
GYG+ +GR+ R H L+ E +H + +VR CDN C+NP HLQ+GTQ ++ D+++ G S + K+ +V EI + S+++ +A+ YG+ ++ IR+ + WS
Sbjct: 20 GYGIIQIEGRRVRVHRLSYE-VHVGPIPDGMIVRHTCDNPPCLNPHHLQLGTQDDNMQDMKVRGRSSRGVARSNHKLTDRQVMEINSRSSETSKSLAREYGVSEWTIRGIRTGKRWS 135
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A7L8YSI5_9CAUD (HNHc domain-containing protein n=4 Tax=root TaxID=1 RepID=A0A7L8YSI5_9CAUD) HSP 1 Score: 69.3 bits (168), Expect = 1.500e-12 Identity = 42/116 (36.21%), Postives = 61/116 (52.59%), Query Frame = 1
Query: 4 KGYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSK------SFKVNAERVREIRASTDSGAKVAQVYGICAASVNNIRSRRTW 333
+GYG K RAH LA E + + VVR CDN C++P+HL++GTQ ++ D G S K+ E VR+IR+S + +A+ YG+ S+ NI R+TW
Sbjct: 31 EGYGRIMVNRVKYRAHRLAYE-LANGPIPDGYVVRHKCDNPSCIDPSHLEVGTQADNIKDKVTRGRQALGCFVGSSKLTEESVRDIRSSDLKVSLLAERYGVSTVSIRNILRRKTW 145
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A4V2ZZL4_9BURK (HNH endonuclease n=1 Tax=Paraburkholderia silviterrae TaxID=2528715 RepID=A0A4V2ZZL4_9BURK) HSP 1 Score: 67.8 bits (164), Expect = 6.050e-12 Identity = 41/123 (33.33%), Postives = 63/123 (51.22%), Query Frame = 1
Query: 7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSK--------SFKVNAERVREIR------ASTDSGAKVAQVYGICAASVNNIRSRRTW 333
GYGL +G+ AH ++ E +H + ++ V CDN +C+NPAHL +GT+ ++ HD+ G + + K E V EIR + TD +A+ YG+ +V I RRTW
Sbjct: 28 GYGLVWHEGKNRLAHRVSFE-LHNSPITGTQDVMHSCDNRKCINPAHLSLGTRLDNMHDMIAKGRDRHPKGLHAGNVKATPEIVAEIRRRFKPYSRTDGSMALAREYGLSQGAVWAILERRTW 149
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A345AQG7_9CAUD (Uncharacterized protein n=1 Tax=Escherichia phage Vec13 TaxID=2783859 RepID=A0A345AQG7_9CAUD) HSP 1 Score: 67.0 bits (162), Expect = 7.740e-12 Identity = 42/115 (36.52%), Postives = 58/115 (50.43%), Query Frame = 1
Query: 7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSKSFKVNAERV------REIRASTDSGAKVAQVYGICAASVNNIRSRRTW 333
GYG T GRK R H L H + +VVR CDN +C N HL++GT Q++ D G S + N V EIR S+ S K+A+ YG+ ++V+ I+ TW
Sbjct: 15 GYGETRVDGRKVRVHRLEWTK-HYGPIPHDKVVRHKCDNPKCFNIEHLELGTTQDNTADRVSRGRSAKGEDNGNAVLTIDIVNEIRESSMSQRKIAKTYGVSQSTVSKIKRNVTW 128
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A6M5C981_9CAUD (HNH endonuclease n=2 Tax=root TaxID=1 RepID=A0A6M5C981_9CAUD) HSP 1 Score: 67.4 bits (163), Expect = 8.350e-12 Identity = 42/115 (36.52%), Postives = 59/115 (51.30%), Query Frame = 1
Query: 7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSKS------FKVNAERVREIRASTDSGAKVAQVYGICAASVNNIRSRRTW 333
GYG K AH LA E + + VVR CDN C+NP+HL++GTQ ++ D G S K+ E VR+IR+S + +A+ YG+ S+ NI R+TW
Sbjct: 32 GYGRIMINRVKHGAHRLAYE-LANGPIPDGYVVRHKCDNPSCINPSHLEVGTQADNIKDKVTRGRQASGCSIGVSKLTEEIVRDIRSSGLKVSLLAERYGVSTVSIRNILRRKTW 145
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A658NS07_9ENTR (HNH endonuclease n=6 Tax=Enterobacterales TaxID=91347 RepID=A0A658NS07_9ENTR) HSP 1 Score: 66.2 bits (160), Expect = 1.840e-11 Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 1
Query: 100 VVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSK--------SFKVNAERVREIRASTDSGAKVAQVYGICAASVNNIRSRRTW 333
V+ CDN RC+NP HL++GTQ ++ D++L G +K + K+ E V IR+S S K+A VYG+ + +++IR R+ W
Sbjct: 50 VILHKCDNPRCINPKHLELGTQLDNVRDMELKGRAKHVTGEKNGAAKLTPEDVFAIRSSPLSNRKIAAVYGLSPSYISSIRLRKKW 135
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A090UXA7_PSEVU (HNHc domain-containing protein n=2 Tax=Pseudescherichia vulneris TaxID=566 RepID=A0A090UXA7_PSEVU) HSP 1 Score: 65.5 bits (158), Expect = 3.740e-11 Identity = 44/127 (34.65%), Postives = 67/127 (52.76%), Query Frame = 1
Query: 7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSE----VVRDLCDNSRCVNPAHLQIGTQQESAHD-------VQLHGSSKS-FKVNAERVREIRASTDSGAK------VAQVYGICAASVNNIRSRRTW 333
GYG+ ++KG+ +AH LA + + SE VVR CDN C+NP HL+IGTQ ++ D L+G K+ +E+V EIR G+K +A+ +G+C + V+ I + TW
Sbjct: 15 GYGVRSYKGKVVKAHRLAY--CQSKGIELSEIDGLVVRHKCDNPPCINPEHLEIGTQLDNNRDRASRNRSAHLNGEKNGRAKLTSEQVEEIRRRYVRGSKDSNTVTLAKEFGVCQSHVSEIVRKITW 139
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A2P9JZS3_9CAUD (HNH homing endonuclease n=1 Tax=Salmonella phage vB_SpuP_Spp16 TaxID=2081603 RepID=A0A2P9JZS3_9CAUD) HSP 1 Score: 65.1 bits (157), Expect = 4.940e-11 Identity = 41/120 (34.17%), Postives = 64/120 (53.33%), Query Frame = 1
Query: 7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSE----VVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSK-SFKVNAERVREIRASTD------SGAKVAQVYGICAASVNNIRSRRTW 333
GYG FKG+ AH H L P + VV CDN RC+NP HL++GT +++ D+ G +K + K+++E VR IR SG K+A ++G+ +++NI R+ +
Sbjct: 15 GYGRLNFKGKLYSAHRTVYMRTHN--LEPEDIAGMVVMHKCDNPRCINPEHLELGTHKDNTQDMLTKGRNKPTRKLSSEEVRFIRKHYKFRDKEYSGVKLATMFGVDKTTISNIILRKCY 132
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A386KLE5_9CAUD (HNHc domain-containing protein n=1 Tax=Acinetobacter phage vB_AbaP_46-62_Aci07 TaxID=2315468 RepID=A0A386KLE5_9CAUD) HSP 1 Score: 65.1 bits (157), Expect = 6.120e-11 Identity = 43/126 (34.13%), Postives = 67/126 (53.17%), Query Frame = 1
Query: 4 KGYGLTTFKGRKTRAHVLAIESIHKRFLRP--SEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQ-------LHG-SSKSFKVNAERVREIRASTDSGAK------VAQVYGICAASVNNIRSRRTW 333
+GYG +KG+ T AH +A + L +VVR CDN C+NP HL+IGTQQ++ D+ +HG S + K+ + V+ IRA ++ +A+ YGI V++I + R+W
Sbjct: 18 RGYGRYRYKGKMTLAHRIAYCEANNVTLEDIKGKVVRHKCDNPVCINPDHLEIGTQQDNIKDMNDRGRQRNVHGMDSPNAKITDDVVKAIRAEYVKDSRKFGYSALARKYGISDVMVSHIANNRSW 143
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Match: A0A7G9IRE0_9CAUD (HNHc domain-containing protein n=1 Tax=Citrobacter phage NS1 TaxID=2766968 RepID=A0A7G9IRE0_9CAUD) HSP 1 Score: 63.9 bits (154), Expect = 1.130e-10 Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 1
Query: 7 GYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHLQIGTQQESAHDVQLHGSSKSFKVNAERVREIRASTDSGAKVAQVYGICAASVNNIRSRRTW 333
GYG G K AH L + + + + VVR CDN CVNP HL++GTQ+++ +D G + K++ ++VREIR S VA YGI V +R+R+++
Sbjct: 15 GYGQIKKAGIKWLAHRL-VYTENFGPIPDGLVVRHKCDNRWCVNPEHLELGTQRDNINDCVTRGHHNNAKLSDQQVREIRKDKRSSRAVAADYGIDHKGVLAVRNRKSY 122 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig82.15993.1 >prot_C-linearis_contig82.15993.1 ID=prot_C-linearis_contig82.15993.1|Name=mRNA_C-linearis_contig82.15993.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=116bp LKGYGLTTFKGRKTRAHVLAIESIHKRFLRPSEVVRDLCDNSRCVNPAHLback to top mRNA from alignment at C-linearis_contig82:325060..325407- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig82.15993.1 ID=mRNA_C-linearis_contig82.15993.1|Name=mRNA_C-linearis_contig82.15993.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=348bp|location=Sequence derived from alignment at C-linearis_contig82:325060..325407- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig82:325060..325407- >mRNA_C-linearis_contig82.15993.1 ID=mRNA_C-linearis_contig82.15993.1|Name=mRNA_C-linearis_contig82.15993.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at C-linearis_contig82:325060..325407- (Chordaria linearis ClinC8C monoicous)back to top |