mRNA_C-linearis_contig82.15991.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.15991.1
Unique NamemRNA_C-linearis_contig82.15991.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Match: B5LWF4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF4_9PHYC)

HSP 1 Score: 306 bits (785), Expect = 1.160e-97
Identity = 159/236 (67.37%), Postives = 190/236 (80.51%), Query Frame = 2
Query:  491 LQTVTLTDTKNQDVTLAYDRNENEFGYGGDMYGVGDKFELFGKMITVADGSIVLLFSDTVAKSWPFGSSKALSVVGAAGSHFMRNLTTNVLNLVGEKIDGEKGSTYNST*VHNTTDSTTQEVSRMVHELDATSENAAISIGVLHTDVSTTQFIEPTLAMRYDATVVSAQDSSDATTSATFESTGLSFDTDAAAIYFGASKNFRIKFSDGTSSVLQIQSYDSGTLDYVTRQEFNDST 1198
            +QTVTL    + D TL YD + +   YGGD YGVGDKFELF + +TVADGSIVLLFSDTVAK+WPF +SKALSVVG+AGSHFM+N+T N  NLVG+KIDGE GSTYNS  +HNT DS+T EVSRMVHE+D  S NA +S+GVLHTD S  +FIEP L+++  AT +SAQ+  + TTSATF+STGLSFDTD AAIYFG+S+NFRIKFS GT SVLQIQS+D  +  Y+TRQEF D+T
Sbjct:  191 VQTVTLRHPTSADATLVYDSSTDNLAYGGDHYGVGDKFELFNRTVTVADGSIVLLFSDTVAKTWPFDASKALSVVGSAGSHFMKNITCNTHNLVGQKIDGETGSTYNSAWIHNTDDSSTLEVSRMVHEVDEDSANATLSLGVLHTDSSNQKFIEPALSLQATATTISAQNDDEQTTSATFQSTGLSFDTDDAAIYFGSSQNFRIKFSSGTPSVLQIQSFDDASDSYITRQEFTDAT 426          
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Match: Q6XLT5_9PHYC (FirrV-1-N1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT5_9PHYC)

HSP 1 Score: 291 bits (745), Expect = 7.540e-92
Identity = 152/236 (64.41%), Postives = 186/236 (78.81%), Query Frame = 2
Query:  491 LQTVTLTDTKNQDVTLAYDRNENEFGYGGDMYGVGDKFELFGKMITVADGSIVLLFSDTVAKSWPFGSSKALSVVGAAGSHFMRNLTTNVLNLVGEKIDGEKGSTYNST*VHNTTDSTTQEVSRMVHELDATSENAAISIGVLHTDVSTTQFIEPTLAMRYDATVVSAQDSSDATTSATFESTGLSFDTDAAAIYFGASKNFRIKFSDGTSSVLQIQSYDSGTLDYVTRQEFNDST 1198
            +QTV L  T  +D TL YD + N   YGGD Y  GDKF+LF + +TVADGSIVLLF+DTVAKSWPF ++KALSVVG+AGSHFM+N+T NV NLVG+K DG  GSTYNS  +HNT DS+T EVSRMVHELD  S N  +S+GVL+TD S+ QFIEP L+++  +  +S+Q+ ++ TTSATFES GL+FDTD AAIYFG+S++FRIKFS GT SVLQIQSYD  T  Y+TRQEF DS+
Sbjct:  177 IQTVVLK-TTGEDATLVYDGHTNSVAYGGDAYSTGDKFQLFNRTVTVADGSIVLLFADTVAKSWPFDATKALSVVGSAGSHFMKNITCNVHNLVGQKTDGTTGSTYNSAWIHNTDDSSTLEVSRMVHELDEESANGTLSLGVLYTDSSSQQFIEPALSLQATSCTISSQNDAEQTTSATFESRGLTFDTDDAAIYFGSSQSFRIKFSSGTPSVLQIQSYDDNTSSYITRQEFTDSS 411          
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Match: Q6XLY0_9PHYC (FirrV-1-B56 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLY0_9PHYC)

HSP 1 Score: 289 bits (740), Expect = 4.120e-91
Identity = 154/245 (62.86%), Postives = 189/245 (77.14%), Query Frame = 2
Query:  467 FSADNKSSLQTVTLTDTKNQDV-TLAYDRNENEFGYGGDMYGVGDKFELFGKMITVADGSIVLLFSDTVAKSWPFGSSKALSVVGAAGSHFMRNLTTNVLNLVGEKIDGEKGSTYNST*VHNTTDSTTQEVSRMVHELDATSENAAISIGVLHTDVSTTQFIEPTLAMRYDATVVSAQDSSDATTSATFESTGLSFDTDAAAIYFGASKNFRIKFSDGTSSVLQIQSYDSGTLDYVTRQEFNDST 1198
            F  DN  ++QTVTL +  ++ + TL YD + ++  YGGD Y VGDKF++F K +TVADGSIVLLFSDTVAK+WPF +SKAL+VVG+AGSHFM+N+T NV NLVG+K  GE GSTY+S  V N  DS T EVSRMVHELD TS    +S+GVL+TD S  QFIEP LA++  +T +SAQ+ ++ TTSATFES GLSFDTD AAIYFG+S+ FRIKFSDGT S LQIQS+D  T  Y+TRQE  DS+
Sbjct:  166 FPGDNSEAVQTVTLKNKNHESLETLVYDAHTDKLAYGGDAYSVGDKFQMFNKTVTVADGSIVLLFSDTVAKTWPFDASKALAVVGSAGSHFMKNITCNVQNLVGQKTTGESGSTYSSAWVTNADDSNTLEVSRMVHELDDTSTTGTLSLGVLYTDSSNQQFIEPALALQATSTTISAQNDAEQTTSATFESKGLSFDTDDAAIYFGSSQRFRIKFSDGTPSALQIQSFDDTTSSYITRQEVTDSS 410          
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Match: Q8QNL6_ESV1K (EsV-1-50 n=3 Tax=root TaxID=1 RepID=Q8QNL6_ESV1K)

HSP 1 Score: 228 bits (581), Expect = 3.340e-67
Identity = 121/224 (54.02%), Postives = 154/224 (68.75%), Query Frame = 2
Query:  527 DVTLAYDRNENEFGYGGDMYGVGDKFELFGKMITVADGSIVLLFSDTVAKSWPFGSSKALSVVGAAGSHFMRNLTTNVLNLVGEKIDGEKGSTYNST*VHNTTDSTTQEVSRMVHELDATSENAAISIGVLHTDVSTTQFIEPTLAMRYDATVVSAQDSSDATTSATFESTGLSFDTDAAAIYFGASKNFRIKFSDGTSSVLQIQSYDSGTLDYVTRQEFNDST 1198
            DV L Y    + F  G ++YGVGDKF LFGKM+TVADGSIVL+F DTVAK +PF +S A +V+G  GS F +N T NV+N+VG K  G  G TY+S+ V++T   T  E +R+VH +D  S N  ISIGV HTD ++  FIEP +     +T +SAQD SD T S T + TG+SFDTD A IYFGA++ FRI F DGT S L I+SYD+ T  Y+TR EF+D+T
Sbjct:  199 DVELLYTPESDTFTIGNNVYGVGDKFNLFGKMVTVADGSIVLVFEDTVAKVYPFNTSTASNVIGTLGSQFAKNYTCNVINVVGSKTTGASGDTYSSSWVYDTETDTIAEATRIVHTIDEDSANGTISIGVRHTDANSNTFIEPVVTCASGSTTISAQDDSDNTVSTTIDPTGISFDTDDACIYFGAAQKFRIIFRDGTPSTLAIESYDADTGTYMTRSEFSDAT 422          
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Match: A0A835Z0Q4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 5.390e-20
Identity = 69/232 (29.74%), Postives = 129/232 (55.60%), Query Frame = 2
Query:  500 VTLTDTKNQDVTLAYDRNENEFGYGGDMYGVGDKFELFGKMITVADGSIVLLFSDTVAKSWPFGSSKALSVVGAAGSHFMRNLTTNVLNLVGEKIDGEKGSTYNST*VHNTTDSTTQEVSRMVHELDATSENAAISIGVLHTDVSTTQFIEPTLAMRYDATVVSAQDSSDATTSATFESTGLSFDTDAAAIYFGASKNFRIKFSDGT--SSVLQIQSYDSGTLDYVTRQEFN 1189
            VT+       +   Y  +++     G  + VGD+F  FG+   +A GSIV+ F+++V  ++P  ++ A S     G+ +   ++ +     G++  G+ G T  S  V++ ++ TTQE++R +  + +  ++   S+G+ H D ++T FI+P +    D T  ++ D++  T +++F   GLSFD   AA+Y GA+K FR+KF+ GT  ++ L I +  +G+  YVT+  F+
Sbjct:  174 VTIKSASGDGMLFEYCPDDDTVIVAGVRHQVGDRFVCFGQSAMIARGSIVVAFTNSVTATYPHSATLA-SKATTQGTTYFNAVSMSSATFTGQQTLGQTGKTVQSHYVYHPSNGTTQEIARHISSVASNQQDGTYSLGLSHADGAST-FIDPVIQCARDETRFTSSDAT-TTVNSSFTKAGLSFDNADAALYLGANKEFRLKFTAGTGGTNYLSIDALVNGS--YVTKSSFS 400          
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Match: B5LWJ5_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWJ5_9PHYC)

HSP 1 Score: 76.6 bits (187), Expect = 1.670e-11
Identity = 73/233 (31.33%), Postives = 110/233 (47.21%), Query Frame = 2
Query:  491 LQTVTLTDTKNQDVTLAYDRNENEFGYGGDMYGVGDKFELFGKMITVADGSIVL-LFSDTVAKSWPFGSSKALSVVGAAGSHFMRNLTTNVLNLVGEKIDGEKGSTYNST*VHNTTDSTTQEVSRMVHELDATSENAAISIGVLHTDVSTTQFIEPTLAMRYDATVVSAQDSSDATTSATFESTGLSFDTDAAAIYFGASKNFRIKFSDGTS---SVLQIQSYDSGTLDYVTR 1177
            LQ+V + D  +    L +D++E+   Y   +   GD F +         GSI+L + SDT  K            V  AG   +R++T    + V  K    +  +Y    V++     T E +R+ H L A       S+ +LH+D         T   R    + + QD  D +   TF+S+GLSFD+D  +IYFGA K+FRI FSD  S   ++L++QS    T +YVTR
Sbjct:  271 LQSVCVQDLNSTSHVLEFDQSESFVKYKDRLLHSGDTFLMGNFRAVYVQGSILLEVSSDTAQK------------VETAGDLTIRDVTMRSCSQVTTKSVDAETMSYTKHLVYDPDTGVTTEFARVGHGLSADGLGE-FSVDLLHSDTLVNVLSADTSTTR----ITTTQDD-DVSMQTTFDSSGLSFDSDNGSIYFGAGKDFRIHFSDAVSDDPAMLKVQSLSDTTGEYVTR 485          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
B5LWF4_9PHYC1.160e-9767.37Uncharacterized protein n=1 Tax=Feldmannia species... [more]
Q6XLT5_9PHYC7.540e-9264.41FirrV-1-N1 n=1 Tax=Feldmannia irregularis virus a ... [more]
Q6XLY0_9PHYC4.120e-9162.86FirrV-1-B56 n=1 Tax=Feldmannia irregularis virus a... [more]
Q8QNL6_ESV1K3.340e-6754.02EsV-1-50 n=3 Tax=root TaxID=1 RepID=Q8QNL6_ESV1K[more]
A0A835Z0Q4_9STRA5.390e-2029.74Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
B5LWJ5_9PHYC1.670e-1131.33Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:322889..324086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1198
Cds size516
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.15991.1prot_C-linearis_contig82.15991.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 322892..323407 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930611.1733189-UTR-C-linearis_contig82:322888..3228911622930611.1733189-UTR-C-linearis_contig82:322888..322891Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 322889..322891 +
1690881158.8812094-UTR-C-linearis_contig82:322888..3228911690881158.8812094-UTR-C-linearis_contig82:322888..322891Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 322889..322891 +
1622930611.218601-UTR-C-linearis_contig82:323407..3240861622930611.218601-UTR-C-linearis_contig82:323407..324086Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 323408..324086 +
1690881158.9171147-UTR-C-linearis_contig82:323407..3240861690881158.9171147-UTR-C-linearis_contig82:323407..324086Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 323408..324086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930611.1985343-CDS-C-linearis_contig82:322891..3234071622930611.1985343-CDS-C-linearis_contig82:322891..323407Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 322892..323407 +
1690881158.9023316-CDS-C-linearis_contig82:322891..3234071690881158.9023316-CDS-C-linearis_contig82:322891..323407Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 322892..323407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.15991.1

>prot_C-linearis_contig82.15991.1 ID=prot_C-linearis_contig82.15991.1|Name=mRNA_C-linearis_contig82.15991.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=172bp
MSFDLISGYSVRMYWKAAFKAAIVDVRGSNYHQSATCEDAAFAVVNLEPS
STYHVTVSDGIQTLNNSFTRKDSDFLCLENLYEGIRRPDGVYDTTRFEKN
VHDVIFESFSQIVNSGDTILASMAVNGIPHDVETVAVRDGSSVKVDDQNN
YILPFFCRQQELPPDRDSHRH*
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mRNA from alignment at C-linearis_contig82:322889..324086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.15991.1 ID=mRNA_C-linearis_contig82.15991.1|Name=mRNA_C-linearis_contig82.15991.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1198bp|location=Sequence derived from alignment at C-linearis_contig82:322889..324086+ (Chordaria linearis ClinC8C monoicous)
AACATGAGTTTCGACCTTATCTCCGGGTATTCGGTCCGGATGTACTGGAA AGCCGCCTTCAAGGCGGCAATCGTAGACGTCCGAGGCTCTAACTACCACC AGTCGGCCACGTGCGAAGACGCCGCGTTCGCCGTCGTCAACCTCGAGCCG TCGAGCACGTACCACGTGACGGTTTCGGATGGTATTCAAACACTTAATAA CAGCTTCACGAGGAAGGACTCGGATTTCCTATGCCTCGAAAACCTCTACG AAGGGATTCGACGGCCGGACGGAGTCTACGACACGACGAGGTTCGAAAAG AACGTTCACGACGTAATCTTCGAGAGCTTTTCGCAGATTGTAAACTCCGG CGACACGATCCTAGCAAGCATGGCTGTCAACGGAATCCCTCACGACGTCG AGACCGTCGCCGTCAGGGACGGGTCGTCGGTGAAGGTCGACGACCAGAAC AACTATATCCTCCCCTTTTTCTGCCGACAACAAGAGCTCCCTCCAGACCG TGACTCTCACAGACACTAAGAACCAAGACGTCACCCTGGCGTACGACCGA AACGAGAACGAATTTGGGTACGGCGGGGACATGTACGGGGTGGGTGACAA GTTCGAGCTGTTCGGAAAGATGATAACGGTCGCGGACGGTTCGATCGTGC TGTTGTTCTCGGACACTGTGGCCAAATCGTGGCCTTTCGGTTCGTCCAAG GCACTTTCCGTGGTAGGAGCCGCTGGTTCGCACTTCATGAGGAACCTCAC CACCAATGTGTTGAACCTGGTTGGTGAGAAGATCGACGGCGAGAAGGGGT CCACCTACAACTCGACGTGAGTTCACAACACCACGGACTCCACGACGCAG GAAGTCTCCAGGATGGTGCACGAGCTTGACGCAACCTCCGAGAACGCCGC CATCAGCATCGGAGTTCTCCACACCGACGTCTCTACCACCCAGTTCATCG AGCCGACTCTGGCCATGAGGTATGACGCCACCGTCGTCAGCGCACAGGAT TCCTCCGACGCTACCACCTCGGCGACTTTCGAGAGCACCGGGCTCAGCTT TGACACGGACGCAGCAGCAATCTACTTTGGTGCTTCGAAAAACTTCAGGA TCAAGTTCTCCGACGGAACTTCCTCCGTCCTGCAGATCCAGAGCTACGAC TCGGGCACCCTCGACTACGTCACCCGGCAGGAGTTCAACGACTCTACG
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Coding sequence (CDS) from alignment at C-linearis_contig82:322889..324086+

>mRNA_C-linearis_contig82.15991.1 ID=mRNA_C-linearis_contig82.15991.1|Name=mRNA_C-linearis_contig82.15991.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at C-linearis_contig82:322889..324086+ (Chordaria linearis ClinC8C monoicous)
ATGAGTTTCGACCTTATCTCCGGGTATTCGGTCCGGATGTACTGGAAAGC
CGCCTTCAAGGCGGCAATCGTAGACGTCCGAGGCTCTAACTACCACCAGT
CGGCCACGTGCGAAGACGCCGCGTTCGCCGTCGTCAACCTCGAGCCGTCG
AGCACGTACCACGTGACGGTTTCGGATGGTATTCAAACACTTAATAACAG
CTTCACGAGGAAGGACTCGGATTTCCTATGCCTCGAAAACCTCTACGAAG
GGATTCGACGGCCGGACGGAGTCTACGACACGACGAGGTTCGAAAAGAAC
GTTCACGACGTAATCTTCGAGAGCTTTTCGCAGATTGTAAACTCCGGCGA
CACGATCCTAGCAAGCATGGCTGTCAACGGAATCCCTCACGACGTCGAGA
CCGTCGCCGTCAGGGACGGGTCGTCGGTGAAGGTCGACGACCAGAACAAC
TATATCCTCCCCTTTTTCTGCCGACAACAAGAGCTCCCTCCAGACCGTGA
CTCTCACAGACACTAAATGAGTTTCGACCTTATCTCCGGGTATTCGGTCC
GGATGTACTGGAAAGCCGCCTTCAAGGCGGCAATCGTAGACGTCCGAGGC
TCTAACTACCACCAGTCGGCCACGTGCGAAGACGCCGCGTTCGCCGTCGT
CAACCTCGAGCCGTCGAGCACGTACCACGTGACGGTTTCGGATGGTATTC
AAACACTTAATAACAGCTTCACGAGGAAGGACTCGGATTTCCTATGCCTC
GAAAACCTCTACGAAGGGATTCGACGGCCGGACGGAGTCTACGACACGAC
GAGGTTCGAAAAGAACGTTCACGACGTAATCTTCGAGAGCTTTTCGCAGA
TTGTAAACTCCGGCGACACGATCCTAGCAAGCATGGCTGTCAACGGAATC
CCTCACGACGTCGAGACCGTCGCCGTCAGGGACGGGTCGTCGGTGAAGGT
CGACGACCAGAACAACTATATCCTCCCCTTTTTCTGCCGACAACAAGAGC
TCCCTCCAGACCGTGACTCTCACAGACACTAA
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