mRNA_C-linearis_contig82.15991.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Match: B5LWF4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF4_9PHYC) HSP 1 Score: 306 bits (785), Expect = 1.160e-97 Identity = 159/236 (67.37%), Postives = 190/236 (80.51%), Query Frame = 2
Query: 491 LQTVTLTDTKNQDVTLAYDRNENEFGYGGDMYGVGDKFELFGKMITVADGSIVLLFSDTVAKSWPFGSSKALSVVGAAGSHFMRNLTTNVLNLVGEKIDGEKGSTYNST*VHNTTDSTTQEVSRMVHELDATSENAAISIGVLHTDVSTTQFIEPTLAMRYDATVVSAQDSSDATTSATFESTGLSFDTDAAAIYFGASKNFRIKFSDGTSSVLQIQSYDSGTLDYVTRQEFNDST 1198
+QTVTL + D TL YD + + YGGD YGVGDKFELF + +TVADGSIVLLFSDTVAK+WPF +SKALSVVG+AGSHFM+N+T N NLVG+KIDGE GSTYNS +HNT DS+T EVSRMVHE+D S NA +S+GVLHTD S +FIEP L+++ AT +SAQ+ + TTSATF+STGLSFDTD AAIYFG+S+NFRIKFS GT SVLQIQS+D + Y+TRQEF D+T
Sbjct: 191 VQTVTLRHPTSADATLVYDSSTDNLAYGGDHYGVGDKFELFNRTVTVADGSIVLLFSDTVAKTWPFDASKALSVVGSAGSHFMKNITCNTHNLVGQKIDGETGSTYNSAWIHNTDDSSTLEVSRMVHEVDEDSANATLSLGVLHTDSSNQKFIEPALSLQATATTISAQNDDEQTTSATFQSTGLSFDTDDAAIYFGSSQNFRIKFSSGTPSVLQIQSFDDASDSYITRQEFTDAT 426
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Match: Q6XLT5_9PHYC (FirrV-1-N1 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLT5_9PHYC) HSP 1 Score: 291 bits (745), Expect = 7.540e-92 Identity = 152/236 (64.41%), Postives = 186/236 (78.81%), Query Frame = 2
Query: 491 LQTVTLTDTKNQDVTLAYDRNENEFGYGGDMYGVGDKFELFGKMITVADGSIVLLFSDTVAKSWPFGSSKALSVVGAAGSHFMRNLTTNVLNLVGEKIDGEKGSTYNST*VHNTTDSTTQEVSRMVHELDATSENAAISIGVLHTDVSTTQFIEPTLAMRYDATVVSAQDSSDATTSATFESTGLSFDTDAAAIYFGASKNFRIKFSDGTSSVLQIQSYDSGTLDYVTRQEFNDST 1198
+QTV L T +D TL YD + N YGGD Y GDKF+LF + +TVADGSIVLLF+DTVAKSWPF ++KALSVVG+AGSHFM+N+T NV NLVG+K DG GSTYNS +HNT DS+T EVSRMVHELD S N +S+GVL+TD S+ QFIEP L+++ + +S+Q+ ++ TTSATFES GL+FDTD AAIYFG+S++FRIKFS GT SVLQIQSYD T Y+TRQEF DS+
Sbjct: 177 IQTVVLK-TTGEDATLVYDGHTNSVAYGGDAYSTGDKFQLFNRTVTVADGSIVLLFADTVAKSWPFDATKALSVVGSAGSHFMKNITCNVHNLVGQKTDGTTGSTYNSAWIHNTDDSSTLEVSRMVHELDEESANGTLSLGVLYTDSSSQQFIEPALSLQATSCTISSQNDAEQTTSATFESRGLTFDTDDAAIYFGSSQSFRIKFSSGTPSVLQIQSYDDNTSSYITRQEFTDSS 411
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Match: Q6XLY0_9PHYC (FirrV-1-B56 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLY0_9PHYC) HSP 1 Score: 289 bits (740), Expect = 4.120e-91 Identity = 154/245 (62.86%), Postives = 189/245 (77.14%), Query Frame = 2
Query: 467 FSADNKSSLQTVTLTDTKNQDV-TLAYDRNENEFGYGGDMYGVGDKFELFGKMITVADGSIVLLFSDTVAKSWPFGSSKALSVVGAAGSHFMRNLTTNVLNLVGEKIDGEKGSTYNST*VHNTTDSTTQEVSRMVHELDATSENAAISIGVLHTDVSTTQFIEPTLAMRYDATVVSAQDSSDATTSATFESTGLSFDTDAAAIYFGASKNFRIKFSDGTSSVLQIQSYDSGTLDYVTRQEFNDST 1198
F DN ++QTVTL + ++ + TL YD + ++ YGGD Y VGDKF++F K +TVADGSIVLLFSDTVAK+WPF +SKAL+VVG+AGSHFM+N+T NV NLVG+K GE GSTY+S V N DS T EVSRMVHELD TS +S+GVL+TD S QFIEP LA++ +T +SAQ+ ++ TTSATFES GLSFDTD AAIYFG+S+ FRIKFSDGT S LQIQS+D T Y+TRQE DS+
Sbjct: 166 FPGDNSEAVQTVTLKNKNHESLETLVYDAHTDKLAYGGDAYSVGDKFQMFNKTVTVADGSIVLLFSDTVAKTWPFDASKALAVVGSAGSHFMKNITCNVQNLVGQKTTGESGSTYSSAWVTNADDSNTLEVSRMVHELDDTSTTGTLSLGVLYTDSSNQQFIEPALALQATSTTISAQNDAEQTTSATFESKGLSFDTDDAAIYFGSSQRFRIKFSDGTPSALQIQSFDDTTSSYITRQEVTDSS 410
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Match: Q8QNL6_ESV1K (EsV-1-50 n=3 Tax=root TaxID=1 RepID=Q8QNL6_ESV1K) HSP 1 Score: 228 bits (581), Expect = 3.340e-67 Identity = 121/224 (54.02%), Postives = 154/224 (68.75%), Query Frame = 2
Query: 527 DVTLAYDRNENEFGYGGDMYGVGDKFELFGKMITVADGSIVLLFSDTVAKSWPFGSSKALSVVGAAGSHFMRNLTTNVLNLVGEKIDGEKGSTYNST*VHNTTDSTTQEVSRMVHELDATSENAAISIGVLHTDVSTTQFIEPTLAMRYDATVVSAQDSSDATTSATFESTGLSFDTDAAAIYFGASKNFRIKFSDGTSSVLQIQSYDSGTLDYVTRQEFNDST 1198
DV L Y + F G ++YGVGDKF LFGKM+TVADGSIVL+F DTVAK +PF +S A +V+G GS F +N T NV+N+VG K G G TY+S+ V++T T E +R+VH +D S N ISIGV HTD ++ FIEP + +T +SAQD SD T S T + TG+SFDTD A IYFGA++ FRI F DGT S L I+SYD+ T Y+TR EF+D+T
Sbjct: 199 DVELLYTPESDTFTIGNNVYGVGDKFNLFGKMVTVADGSIVLVFEDTVAKVYPFNTSTASNVIGTLGSQFAKNYTCNVINVVGSKTTGASGDTYSSSWVYDTETDTIAEATRIVHTIDEDSANGTISIGVRHTDANSNTFIEPVVTCASGSTTISAQDDSDNTVSTTIDPTGISFDTDDACIYFGAAQKFRIIFRDGTPSTLAIESYDADTGTYMTRSEFSDAT 422
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Match: A0A835Z0Q4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q4_9STRA) HSP 1 Score: 101 bits (251), Expect = 5.390e-20 Identity = 69/232 (29.74%), Postives = 129/232 (55.60%), Query Frame = 2
Query: 500 VTLTDTKNQDVTLAYDRNENEFGYGGDMYGVGDKFELFGKMITVADGSIVLLFSDTVAKSWPFGSSKALSVVGAAGSHFMRNLTTNVLNLVGEKIDGEKGSTYNST*VHNTTDSTTQEVSRMVHELDATSENAAISIGVLHTDVSTTQFIEPTLAMRYDATVVSAQDSSDATTSATFESTGLSFDTDAAAIYFGASKNFRIKFSDGT--SSVLQIQSYDSGTLDYVTRQEFN 1189
VT+ + Y +++ G + VGD+F FG+ +A GSIV+ F+++V ++P ++ A S G+ + ++ + G++ G+ G T S V++ ++ TTQE++R + + + ++ S+G+ H D ++T FI+P + D T ++ D++ T +++F GLSFD AA+Y GA+K FR+KF+ GT ++ L I + +G+ YVT+ F+
Sbjct: 174 VTIKSASGDGMLFEYCPDDDTVIVAGVRHQVGDRFVCFGQSAMIARGSIVVAFTNSVTATYPHSATLA-SKATTQGTTYFNAVSMSSATFTGQQTLGQTGKTVQSHYVYHPSNGTTQEIARHISSVASNQQDGTYSLGLSHADGAST-FIDPVIQCARDETRFTSSDAT-TTVNSSFTKAGLSFDNADAALYLGANKEFRLKFTAGTGGTNYLSIDALVNGS--YVTKSSFS 400
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Match: B5LWJ5_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWJ5_9PHYC) HSP 1 Score: 76.6 bits (187), Expect = 1.670e-11 Identity = 73/233 (31.33%), Postives = 110/233 (47.21%), Query Frame = 2
Query: 491 LQTVTLTDTKNQDVTLAYDRNENEFGYGGDMYGVGDKFELFGKMITVADGSIVL-LFSDTVAKSWPFGSSKALSVVGAAGSHFMRNLTTNVLNLVGEKIDGEKGSTYNST*VHNTTDSTTQEVSRMVHELDATSENAAISIGVLHTDVSTTQFIEPTLAMRYDATVVSAQDSSDATTSATFESTGLSFDTDAAAIYFGASKNFRIKFSDGTS---SVLQIQSYDSGTLDYVTR 1177
LQ+V + D + L +D++E+ Y + GD F + GSI+L + SDT K V AG +R++T + V K + +Y V++ T E +R+ H L A S+ +LH+D T R + + QD D + TF+S+GLSFD+D +IYFGA K+FRI FSD S ++L++QS T +YVTR
Sbjct: 271 LQSVCVQDLNSTSHVLEFDQSESFVKYKDRLLHSGDTFLMGNFRAVYVQGSILLEVSSDTAQK------------VETAGDLTIRDVTMRSCSQVTTKSVDAETMSYTKHLVYDPDTGVTTEFARVGHGLSADGLGE-FSVDLLHSDTLVNVLSADTSTTR----ITTTQDD-DVSMQTTFDSSGLSFDSDNGSIYFGAGKDFRIHFSDAVSDDPAMLKVQSLSDTTGEYVTR 485 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig82.15991.1 >prot_C-linearis_contig82.15991.1 ID=prot_C-linearis_contig82.15991.1|Name=mRNA_C-linearis_contig82.15991.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=172bp MSFDLISGYSVRMYWKAAFKAAIVDVRGSNYHQSATCEDAAFAVVNLEPSback to top mRNA from alignment at C-linearis_contig82:322889..324086+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig82.15991.1 ID=mRNA_C-linearis_contig82.15991.1|Name=mRNA_C-linearis_contig82.15991.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1198bp|location=Sequence derived from alignment at C-linearis_contig82:322889..324086+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig82:322889..324086+ >mRNA_C-linearis_contig82.15991.1 ID=mRNA_C-linearis_contig82.15991.1|Name=mRNA_C-linearis_contig82.15991.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1032bp|location=Sequence derived from alignment at C-linearis_contig82:322889..324086+ (Chordaria linearis ClinC8C monoicous)back to top |