mRNA_C-linearis_contig82.15987.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: B5LWF8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF8_9PHYC) HSP 1 Score: 207 bits (528), Expect = 6.000e-64 Identity = 108/193 (55.96%), Postives = 141/193 (73.06%), Query Frame = 1
Query: 1 NMENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQAS--KEIESYDGMPAGFCFLDTGERRVVAKEVVEMNLERERQVIKKRRCDDMI 573
NME+S+IRVD A ++GS ID V+MVLGCTS + +T+LRRL FP+L + +RINGKG TPVADAK LV++VLL PG+ A FR KSA VCRLLGGDM+LV EIEQR ATL+ + EGR Q LLG + +V +S +I+ Y+GMPAGF FLD ++ VAKEVV+ L+ ++Q +K+RRC+DM+
Sbjct: 7 NMESSSIRVDKASKKGSVIDTVKMVLGCTSSSGNTNLRRLTTRFPDLCVDITRLRINGKGMATPVADAKLLVQVVLLLPGQKAIEFRRKSADVVCRLLGGDMSLVKEIEQRCATLQRSPEGRVIQDILLGDGDADRSVVTSSTSSQIDKYEGMPAGFRFLDASDQHRVAKEVVKQALDCKKQALKRRRCEDMV 199
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: B5LWM3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM3_9PHYC) HSP 1 Score: 197 bits (502), Expect = 6.580e-59 Identity = 108/198 (54.55%), Postives = 140/198 (70.71%), Query Frame = 1
Query: 1 NMENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDF----PELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQASKEIESYDGMPAGFCFLDTGERRVVAKEVVEMNLERERQVIKKRRCDDMIFRY 582
N+ N+TIR+D A Q+GS IDV+RMVL C + +A+T+ RRL +D E AACSH+RINGKG+LTPVA+AKTLVEI+ PGK+AR FR KSA+++CRLLGGD TLV EIEQRRA LEST +GR TQAFLLG + +++ + + GMP GF +L+ +RR VA EVV + L+R+R +DMI Y
Sbjct: 7 NVVNATIRIDNATQKGSVIDVIRMVLRCDASSANTAFRRLKDDMLKSRAEFGAACSHLRINGKGRLTPVANAKTLVEIIFSLPGKLAREFRRKSASQICRLLGGDPTLVFEIEQRRAELESTPKGRVTQAFLLGESRHDTD--------DDFTGMPVGFRYLEESQRRAVAGEVVALALKRQR-------IEDMIGSY 189
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: B5LWG1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG1_9PHYC) HSP 1 Score: 196 bits (499), Expect = 3.300e-58 Identity = 108/203 (53.20%), Postives = 138/203 (67.98%), Query Frame = 1
Query: 7 ENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLL--GGNSGNSEIVQASKEIESYDGMPAGFCFLDTGERRVVAKEVVEMNLERERQVI-------KKRRCDDMIFRYKT 588
+N +IR D ++GS IDV+R VLGC+S A+T+L L F +L +H +INGKGK TPVADAKTLVEI+ L PG+ A FR KSA KVCRL+GGDM+LV EIEQR LEST EGR TQAFLL G + +S AS +++ Y+GMPAGF FLD ++ VAKEVV+ L+ + K++RC+DM+ RYKT
Sbjct: 9 DNFSIRADATTKKGSVIDVIRSVLGCSSSAANTNLSNLKTRFSDLGNNIAHAQINGKGKSTPVADAKTLVEIIFLLPGQKACKFRRKSAEKVCRLMGGDMSLVVEIEQRCTALESTPEGRATQAFLLNPGSSENSSSAPCASAQLKKYEGMPAGFSFLDPSDQCKVAKEVVQQALDGRKXXXXXXXXXXKRQRCEDMVGRYKT 211
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: D8LP49_ECTSI (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP49_ECTSI) HSP 1 Score: 191 bits (485), Expect = 2.480e-56 Identity = 97/195 (49.74%), Postives = 135/195 (69.23%), Query Frame = 1
Query: 1 NMENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQASKEIESYDGMPAGFCFLDTGERRVVAKEVVEMNLERERQVIKKRRCDDMIFRYK 585
+M+ +TIR D ++GS +D +RMVL C S NA+T+ RL + PEL + C+ ++NGKG TPVADAKTL+EIV L PGK A SFR +S+ KVCRLLGGD++LV+EIE R ATL+STE+GR TQ FLL G + +E++DGMPAGF +L +R VAK +++ L+ Q +K++R DD++ Y+
Sbjct: 6 SMDGATIRADKQTKKGSVMDTIRMVLRCDSSNANTAFGRLLQAHPELGSRCTRSKLNGKGNETPVADAKTLIEIVWLLPGKKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGR---------EEAVETFDGMPAGFKYLSETDRAQVAKRMIDQQLKAGDQALKRKRVDDLVHSYR 191
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE) HSP 1 Score: 200 bits (509), Expect = 1.950e-55 Identity = 106/195 (54.36%), Postives = 136/195 (69.74%), Query Frame = 1
Query: 1 NMENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQASKEIESYDGMPAGFCFLDTGERRVVAKEVVEMNLERERQVIKKRRCDDMIFRYK 585
NM +TIRVD Q GS ID +RMVLG S A+TSL RL EL C+ +RINGKGK TPVADAKTL+EIV L PGK AR FR +S+ KVCRLLGGD++LV+EIE R ATL+STE+GR TQ FLLG + + +E++DGMPAGF +L +R AK+++E+NLE + +K++R DDM+ Y+
Sbjct: 903 NMHGATIRVDKNEQVGSVIDTIRMVLGGDSSAANTSLNRLILANEELGTRCTQLRINGKGKFTPVADAKTLIEIVWLLPGKKAREFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRATQEFLLG---------EREEAVETFDGMPAGFRYLPVEDRAQFAKQMLELNLEMSKVALKRKRVDDMVQSYR 1088
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: A0A835YYW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW8_9STRA) HSP 1 Score: 152 bits (384), Expect = 2.350e-41 Identity = 88/187 (47.06%), Postives = 117/187 (62.57%), Query Frame = 1
Query: 13 STIRVDTAPQQGSAIDVVRMVL-GCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQASKEIESYDG-MPAGFCFLDTGERRVVAKEVVEMNLERERQVIKKRRCDD 567
++IRVD+A +GS IDV+R+V+ S A T+ RL + P++ ++C H+RINGKGK TP ADAKTLVEIV PGK AR FR +SA VCRLLGGD++LV EIE R L+ TE G Q FL+ + + AS+E ++ MPAGF FLD ++ VA +V L K++R DD
Sbjct: 8 TSIRVDSASNKGSVIDVIRLVIPNLPSNQASTTFARLASEMPDVASSCCHLRINGKGKPTPCADAKTLVEIVWSLPGKAARDFRRESANTVCRLLGGDLSLVQEIESRHHALQKTEGGHAVQGFLM-----SDTLSAASQESDTQLALMPAGFAFLDETSKQQVALSMVHDELA------KRKRADD 183
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC) HSP 1 Score: 149 bits (375), Expect = 1.880e-39 Identity = 84/171 (49.12%), Postives = 107/171 (62.57%), Query Frame = 1
Query: 1 NMENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQASKEIESYDGMPAGFCFLDTGERRVVAKEVV 513
+M+ STIRVD + GS ID +RMVL C S NA+TSL RL P L + +++NG+GK TPVADAKTL+EIV L PG+ A +FR + K+CRLLGGD +LV+EIE R ATL TEEGR TQ F L N + KE+ S + P+ F E+R A +V
Sbjct: 24 SMDGSTIRVDKNTKLGSVIDTIRMVLECDSSNANTSLGRLVLSHPGLGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEARHATLTGTEEGRATQEFFLNDNHVTIDQPDQVKELRSGE-EPSWFKNATAEEKRAFASTMV 193
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: A0A835YNN1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN1_9STRA) HSP 1 Score: 135 bits (339), Expect = 7.710e-37 Identity = 72/126 (57.14%), Postives = 86/126 (68.25%), Query Frame = 1
Query: 13 STIRVDTAPQQGSAIDVVRMVL-GCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLL 387
+TIRVD A +GS IDV+R+V S +A T RL + PE+ C +RINGKGK +PVADAKTLVEIV PGK AR FR SA VCR+LGGD+++V EIEQR TL+ TE GR QAF L
Sbjct: 8 ATIRVDAATNKGSVIDVIRLVHPDIESKHASTYFTRLTTEIPEIATQCGLLRINGKGKPSPVADAKTLVEIVFSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEQRHHTLQQTEGGRAAQAFTL 133
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: A0A835YZ27_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ27_9STRA) HSP 1 Score: 131 bits (330), Expect = 2.150e-35 Identity = 75/134 (55.97%), Postives = 91/134 (67.91%), Query Frame = 1
Query: 13 STIRVDTAPQQGSAIDVVRMVL-GCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSE 411
+ IRVDTA QGS IDV+R+V TSGNA L L +D +T SH+RIN KGK TP ADAKTLVEIV PGK AR FR SA VCR+LGGD+++V EIE+R TL+ TE GR QAF+L + +S+
Sbjct: 8 AAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLTKD---VTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLADSDDSSD 138
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA) HSP 1 Score: 135 bits (339), Expect = 1.160e-34 Identity = 73/149 (48.99%), Postives = 95/149 (63.76%), Query Frame = 1
Query: 13 STIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDF-PELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQASKEIESYDGMP 456
+ IRVDTA +GS IDV+++V C + +A T +RL +D +L C +RIN KG+LTP ADAKTLVEIV PGK AR FR +SAA VCR+LGGD+++V E+E R L+ TE GR Q FLL E ++S E G+P
Sbjct: 8 AAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLL-------EDSESSVGGEMISGLP 149 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig82.15987.1 >prot_C-linearis_contig82.15987.1 ID=prot_C-linearis_contig82.15987.1|Name=mRNA_C-linearis_contig82.15987.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=40bp MENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*back to top mRNA from alignment at C-linearis_contig82:316212..316903+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig82.15987.1 ID=mRNA_C-linearis_contig82.15987.1|Name=mRNA_C-linearis_contig82.15987.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=692bp|location=Sequence derived from alignment at C-linearis_contig82:316212..316903+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig82:316212..316903+ >mRNA_C-linearis_contig82.15987.1 ID=mRNA_C-linearis_contig82.15987.1|Name=mRNA_C-linearis_contig82.15987.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at C-linearis_contig82:316212..316903+ (Chordaria linearis ClinC8C monoicous)back to top |