mRNA_C-linearis_contig82.15987.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig82.15987.1
Unique NamemRNA_C-linearis_contig82.15987.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: B5LWF8_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF8_9PHYC)

HSP 1 Score: 207 bits (528), Expect = 6.000e-64
Identity = 108/193 (55.96%), Postives = 141/193 (73.06%), Query Frame = 1
Query:    1 NMENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQAS--KEIESYDGMPAGFCFLDTGERRVVAKEVVEMNLERERQVIKKRRCDDMI 573
            NME+S+IRVD A ++GS ID V+MVLGCTS + +T+LRRL   FP+L    + +RINGKG  TPVADAK LV++VLL PG+ A  FR KSA  VCRLLGGDM+LV EIEQR ATL+ + EGR  Q  LLG    +  +V +S   +I+ Y+GMPAGF FLD  ++  VAKEVV+  L+ ++Q +K+RRC+DM+
Sbjct:    7 NMESSSIRVDKASKKGSVIDTVKMVLGCTSSSGNTNLRRLTTRFPDLCVDITRLRINGKGMATPVADAKLLVQVVLLLPGQKAIEFRRKSADVVCRLLGGDMSLVKEIEQRCATLQRSPEGRVIQDILLGDGDADRSVVTSSTSSQIDKYEGMPAGFRFLDASDQHRVAKEVVKQALDCKKQALKRRRCEDMV 199          
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: B5LWM3_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM3_9PHYC)

HSP 1 Score: 197 bits (502), Expect = 6.580e-59
Identity = 108/198 (54.55%), Postives = 140/198 (70.71%), Query Frame = 1
Query:    1 NMENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDF----PELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQASKEIESYDGMPAGFCFLDTGERRVVAKEVVEMNLERERQVIKKRRCDDMIFRY 582
            N+ N+TIR+D A Q+GS IDV+RMVL C + +A+T+ RRL +D      E  AACSH+RINGKG+LTPVA+AKTLVEI+   PGK+AR FR KSA+++CRLLGGD TLV EIEQRRA LEST +GR TQAFLLG +  +++        + + GMP GF +L+  +RR VA EVV + L+R+R        +DMI  Y
Sbjct:    7 NVVNATIRIDNATQKGSVIDVIRMVLRCDASSANTAFRRLKDDMLKSRAEFGAACSHLRINGKGRLTPVANAKTLVEIIFSLPGKLAREFRRKSASQICRLLGGDPTLVFEIEQRRAELESTPKGRVTQAFLLGESRHDTD--------DDFTGMPVGFRYLEESQRRAVAGEVVALALKRQR-------IEDMIGSY 189          
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: B5LWG1_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG1_9PHYC)

HSP 1 Score: 196 bits (499), Expect = 3.300e-58
Identity = 108/203 (53.20%), Postives = 138/203 (67.98%), Query Frame = 1
Query:    7 ENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLL--GGNSGNSEIVQASKEIESYDGMPAGFCFLDTGERRVVAKEVVEMNLERERQVI-------KKRRCDDMIFRYKT 588
            +N +IR D   ++GS IDV+R VLGC+S  A+T+L  L   F +L    +H +INGKGK TPVADAKTLVEI+ L PG+ A  FR KSA KVCRL+GGDM+LV EIEQR   LEST EGR TQAFLL  G +  +S    AS +++ Y+GMPAGF FLD  ++  VAKEVV+  L+  +          K++RC+DM+ RYKT
Sbjct:    9 DNFSIRADATTKKGSVIDVIRSVLGCSSSAANTNLSNLKTRFSDLGNNIAHAQINGKGKSTPVADAKTLVEIIFLLPGQKACKFRRKSAEKVCRLMGGDMSLVVEIEQRCTALESTPEGRATQAFLLNPGSSENSSSAPCASAQLKKYEGMPAGFSFLDPSDQCKVAKEVVQQALDGRKXXXXXXXXXXKRQRCEDMVGRYKT 211          
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: D8LP49_ECTSI (EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP49_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 2.480e-56
Identity = 97/195 (49.74%), Postives = 135/195 (69.23%), Query Frame = 1
Query:    1 NMENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQASKEIESYDGMPAGFCFLDTGERRVVAKEVVEMNLERERQVIKKRRCDDMIFRYK 585
            +M+ +TIR D   ++GS +D +RMVL C S NA+T+  RL +  PEL + C+  ++NGKG  TPVADAKTL+EIV L PGK A SFR +S+ KVCRLLGGD++LV+EIE R ATL+STE+GR TQ FLL G           + +E++DGMPAGF +L   +R  VAK +++  L+   Q +K++R DD++  Y+
Sbjct:    6 SMDGATIRADKQTKKGSVMDTIRMVLRCDSSNANTAFGRLLQAHPELGSRCTRSKLNGKGNETPVADAKTLIEIVWLLPGKKAHSFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRETQEFLLHGR---------EEAVETFDGMPAGFKYLSETDRAQVAKRMIDQQLKAGDQALKRKRVDDLVHSYR 191          
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: A0A6H5JW74_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW74_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.950e-55
Identity = 106/195 (54.36%), Postives = 136/195 (69.74%), Query Frame = 1
Query:    1 NMENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQASKEIESYDGMPAGFCFLDTGERRVVAKEVVEMNLERERQVIKKRRCDDMIFRYK 585
            NM  +TIRVD   Q GS ID +RMVLG  S  A+TSL RL     EL   C+ +RINGKGK TPVADAKTL+EIV L PGK AR FR +S+ KVCRLLGGD++LV+EIE R ATL+STE+GR TQ FLLG         +  + +E++DGMPAGF +L   +R   AK+++E+NLE  +  +K++R DDM+  Y+
Sbjct:  903 NMHGATIRVDKNEQVGSVIDTIRMVLGGDSSAANTSLNRLILANEELGTRCTQLRINGKGKFTPVADAKTLIEIVWLLPGKKAREFRRQSSEKVCRLLGGDLSLVSEIEARHATLQSTEQGRATQEFLLG---------EREEAVETFDGMPAGFRYLPVEDRAQFAKQMLELNLEMSKVALKRKRVDDMVQSYR 1088          
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: A0A835YYW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYW8_9STRA)

HSP 1 Score: 152 bits (384), Expect = 2.350e-41
Identity = 88/187 (47.06%), Postives = 117/187 (62.57%), Query Frame = 1
Query:   13 STIRVDTAPQQGSAIDVVRMVL-GCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQASKEIESYDG-MPAGFCFLDTGERRVVAKEVVEMNLERERQVIKKRRCDD 567
            ++IRVD+A  +GS IDV+R+V+    S  A T+  RL  + P++ ++C H+RINGKGK TP ADAKTLVEIV   PGK AR FR +SA  VCRLLGGD++LV EIE R   L+ TE G   Q FL+     +  +  AS+E ++    MPAGF FLD   ++ VA  +V   L       K++R DD
Sbjct:    8 TSIRVDSASNKGSVIDVIRLVIPNLPSNQASTTFARLASEMPDVASSCCHLRINGKGKPTPCADAKTLVEIVWSLPGKAARDFRRESANTVCRLLGGDLSLVQEIESRHHALQKTEGGHAVQGFLM-----SDTLSAASQESDTQLALMPAGFAFLDETSKQQVALSMVHDELA------KRKRADD 183          
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: B5LWM4_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM4_9PHYC)

HSP 1 Score: 149 bits (375), Expect = 1.880e-39
Identity = 84/171 (49.12%), Postives = 107/171 (62.57%), Query Frame = 1
Query:    1 NMENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQASKEIESYDGMPAGFCFLDTGERRVVAKEVV 513
            +M+ STIRVD   + GS ID +RMVL C S NA+TSL RL    P L    + +++NG+GK TPVADAKTL+EIV L PG+ A +FR +   K+CRLLGGD +LV+EIE R ATL  TEEGR TQ F L  N    +     KE+ S +  P+ F      E+R  A  +V
Sbjct:   24 SMDGSTIRVDKNTKLGSVIDTIRMVLECDSSNANTSLGRLVLSHPGLGEKYTQLKVNGRGKPTPVADAKTLIEIVWLLPGRRAHAFRCQRVGKICRLLGGDTSLVSEIEARHATLTGTEEGRATQEFFLNDNHVTIDQPDQVKELRSGE-EPSWFKNATAEEKRAFASTMV 193          
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: A0A835YNN1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNN1_9STRA)

HSP 1 Score: 135 bits (339), Expect = 7.710e-37
Identity = 72/126 (57.14%), Postives = 86/126 (68.25%), Query Frame = 1
Query:   13 STIRVDTAPQQGSAIDVVRMVL-GCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLL 387
            +TIRVD A  +GS IDV+R+V     S +A T   RL  + PE+   C  +RINGKGK +PVADAKTLVEIV   PGK AR FR  SA  VCR+LGGD+++V EIEQR  TL+ TE GR  QAF L
Sbjct:    8 ATIRVDAATNKGSVIDVIRLVHPDIESKHASTYFTRLTTEIPEIATQCGLLRINGKGKPSPVADAKTLVEIVFSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEQRHHTLQQTEGGRAAQAFTL 133          
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: A0A835YZ27_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ27_9STRA)

HSP 1 Score: 131 bits (330), Expect = 2.150e-35
Identity = 75/134 (55.97%), Postives = 91/134 (67.91%), Query Frame = 1
Query:   13 STIRVDTAPQQGSAIDVVRMVL-GCTSGNAHTSLRRL*EDFPELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSE 411
            + IRVDTA  QGS IDV+R+V    TSGNA   L  L +D   +T   SH+RIN KGK TP ADAKTLVEIV   PGK AR FR  SA  VCR+LGGD+++V EIE+R  TL+ TE GR  QAF+L  +  +S+
Sbjct:    8 AAIRVDTATNQGSVIDVIRLVNPNPTSGNAANVLANLTKD---VTLNYSHLRINAKGKPTPCADAKTLVEIVWSLPGKAAREFRRTSAKTVCRVLGGDLSIVQEIEKRHHTLQQTEGGRAAQAFMLADSDDSSD 138          
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Match: A0A835Z3L4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L4_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.160e-34
Identity = 73/149 (48.99%), Postives = 95/149 (63.76%), Query Frame = 1
Query:   13 STIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*EDF-PELTAACSHIRINGKGKLTPVADAKTLVEIVLLHPGKIARSFRNKSAAKVCRLLGGDMTLVAEIEQRRATLESTEEGRTTQAFLLGGNSGNSEIVQASKEIESYDGMP 456
            + IRVDTA  +GS IDV+++V  C + +A T  +RL +D   +L   C  +RIN KG+LTP ADAKTLVEIV   PGK AR FR +SAA VCR+LGGD+++V E+E R   L+ TE GR  Q FLL       E  ++S   E   G+P
Sbjct:    8 AAIRVDTATNKGSVIDVIKIVQSCNASDASTYCKRLLDDIGTDLGTRCVQLRINSKGRLTPCADAKTLVEIVWSLPGKAAREFRRQSAANVCRVLGGDLSIVQEVEARHHALQQTEGGRAAQKFLL-------EDSESSVGGEMISGLP 149          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig82.15987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B5LWF8_9PHYC6.000e-6455.96Uncharacterized protein n=1 Tax=Feldmannia species... [more]
B5LWM3_9PHYC6.580e-5954.55Uncharacterized protein n=1 Tax=Feldmannia species... [more]
B5LWG1_9PHYC3.300e-5853.20Uncharacterized protein n=1 Tax=Feldmannia species... [more]
D8LP49_ECTSI2.480e-5649.74EsV-1-210/211 paralog n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JW74_9PHAE1.950e-5554.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YYW8_9STRA2.350e-4147.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B5LWM4_9PHYC1.880e-3949.12Uncharacterized protein n=1 Tax=Feldmannia species... [more]
A0A835YNN1_9STRA7.710e-3757.14Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YZ27_9STRA2.150e-3555.97Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z3L4_9STRA1.160e-3448.99Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig82contigC-linearis_contig82:316212..316903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size692
Cds size120
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig82.15987.1prot_C-linearis_contig82.15987.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig82 316215..316334 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930610.8733742-UTR-C-linearis_contig82:316211..3162141622930610.8733742-UTR-C-linearis_contig82:316211..316214Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 316212..316214 +
1690881158.7755625-UTR-C-linearis_contig82:316211..3162141690881158.7755625-UTR-C-linearis_contig82:316211..316214Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 316212..316214 +
1622930610.9082143-UTR-C-linearis_contig82:316334..3169031622930610.9082143-UTR-C-linearis_contig82:316334..316903Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 316335..316903 +
1690881158.800465-UTR-C-linearis_contig82:316334..3169031690881158.800465-UTR-C-linearis_contig82:316334..316903Chordaria linearis ClinC8C monoicousUTRC-linearis_contig82 316335..316903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930610.8930526-CDS-C-linearis_contig82:316214..3163341622930610.8930526-CDS-C-linearis_contig82:316214..316334Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 316215..316334 +
1690881158.787124-CDS-C-linearis_contig82:316214..3163341690881158.787124-CDS-C-linearis_contig82:316214..316334Chordaria linearis ClinC8C monoicousCDSC-linearis_contig82 316215..316334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig82.15987.1

>prot_C-linearis_contig82.15987.1 ID=prot_C-linearis_contig82.15987.1|Name=mRNA_C-linearis_contig82.15987.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=40bp
MENSTIRVDTAPQQGSAIDVVRMVLGCTSGNAHTSLRRL*
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mRNA from alignment at C-linearis_contig82:316212..316903+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig82.15987.1 ID=mRNA_C-linearis_contig82.15987.1|Name=mRNA_C-linearis_contig82.15987.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=692bp|location=Sequence derived from alignment at C-linearis_contig82:316212..316903+ (Chordaria linearis ClinC8C monoicous)
AACATGGAGAATTCCACCATTCGCGTGGACACCGCTCCTCAGCAAGGAAG TGCCATCGATGTGGTACGGATGGTGCTCGGGTGCACCTCAGGGAATGCAC ACACATCTCTTCGCCGCCTTTAAGAGGATTTTCCGGAGTTGACTGCAGCT TGTAGTCACATCCGCATCAACGGAAAAGGCAAGCTTACCCCTGTGGCGGA CGCGAAAACTCTTGTCGAGATCGTGTTGCTCCACCCCGGTAAAATCGCGC GTAGCTTCCGCAACAAGAGCGCGGCCAAGGTGTGCCGTCTTCTAGGTGGG GACATGACTCTCGTGGCCGAGATTGAACAACGTCGCGCAACCCTCGAGAG TACCGAAGAAGGCCGCACCACCCAAGCTTTTCTGCTGGGGGGAAACTCTG GGAATTCCGAGATTGTTCAGGCTTCCAAGGAAATCGAATCCTACGACGGC ATGCCGGCGGGATTCTGCTTCCTCGACACTGGTGAACGTAGAGTGGTCGC GAAGGAAGTCGTCGAAATGAACCTTGAACGAGAGAGGCAGGTCATCAAGA AAAGAAGATGCGACGACATGATTTTTCGATACAAGACCAGGAAATGGGGG TGGAGCTCGACGACCGGACCAAAATCGAGATTCGGGACAATGTTTCTCTC CTCACGAAGCGGGATCTCGCGATTGAAGGATCTCAGGGAACA
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Coding sequence (CDS) from alignment at C-linearis_contig82:316212..316903+

>mRNA_C-linearis_contig82.15987.1 ID=mRNA_C-linearis_contig82.15987.1|Name=mRNA_C-linearis_contig82.15987.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=240bp|location=Sequence derived from alignment at C-linearis_contig82:316212..316903+ (Chordaria linearis ClinC8C monoicous)
ATGGAGAATTCCACCATTCGCGTGGACACCGCTCCTCAGCAAGGAAGTGC
CATCGATGTGGTACGGATGGTGCTCGGGTGCACCTCAGGGAATGCACACA
CATCTCTTCGCCGCCTTTAAATGGAGAATTCCACCATTCGCGTGGACACC
GCTCCTCAGCAAGGAAGTGCCATCGATGTGGTACGGATGGTGCTCGGGTG
CACCTCAGGGAATGCACACACATCTCTTCGCCGCCTTTAA
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