mRNA_C-linearis_contig81.15971.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig81.15971.1
Unique NamemRNA_C-linearis_contig81.15971.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig81.15971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig81contigC-linearis_contig81:733125..733513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size389
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig81.15971.1prot_C-linearis_contig81.15971.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig81 733157..733456 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930600.4081757-UTR-C-linearis_contig81:733124..7331561622930600.4081757-UTR-C-linearis_contig81:733124..733156Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 733125..733156 +
1690881153.5417929-UTR-C-linearis_contig81:733124..7331561690881153.5417929-UTR-C-linearis_contig81:733124..733156Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 733125..733156 +
1622930600.4439712-UTR-C-linearis_contig81:733456..7335131622930600.4439712-UTR-C-linearis_contig81:733456..733513Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 733457..733513 +
1690881153.559094-UTR-C-linearis_contig81:733456..7335131690881153.559094-UTR-C-linearis_contig81:733456..733513Chordaria linearis ClinC8C monoicousUTRC-linearis_contig81 733457..733513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930600.4285417-CDS-C-linearis_contig81:733156..7334561622930600.4285417-CDS-C-linearis_contig81:733156..733456Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 733157..733456 +
1690881153.5510063-CDS-C-linearis_contig81:733156..7334561690881153.5510063-CDS-C-linearis_contig81:733156..733456Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 733157..733456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig81.15971.1

>prot_C-linearis_contig81.15971.1 ID=prot_C-linearis_contig81.15971.1|Name=mRNA_C-linearis_contig81.15971.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=100bp
MSCSCVLVLSVLAKRRRTRPPHIHVPSCSRIVYDRHVSCRRKCCCMSEKV
DSNTCWVSCIQKYRRCAPQQHRVGAFRVCSCFGYWRNGGEADHHPWSIM*
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mRNA from alignment at C-linearis_contig81:733125..733513+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig81.15971.1 ID=mRNA_C-linearis_contig81.15971.1|Name=mRNA_C-linearis_contig81.15971.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=389bp|location=Sequence derived from alignment at C-linearis_contig81:733125..733513+ (Chordaria linearis ClinC8C monoicous)
GTTGACCCTTATACTTGTTGGGTGTCGTGTATATGAGCTGTTCGTGTGTG
CTCGTGCTTTCGGTACTGGCGAAACGGCGGAGGACCAGACCACCACACAT
ACATGTTCCATCATGTAGTCGCATCGTATACGATCGGCACGTGAGCTGTA
GGCGTAAATGTTGTTGTATGTCAGAGAAGGTTGACTCTAATACTTGTTGG
GTGTCGTGTATTCAGAAATATAGACGATGCGCACCCCAACAGCACCGAGT
AGGAGCTTTTCGTGTGTGCTCGTGCTTCGGGTACTGGCGAAACGGCGGAG
AAGCAGATCACCATCCATGGTCAATCATGTAGTCACATTGTATACGATCG
GCACGTGAGCTGTTGGGGTGCGCAGCGTCTACATTTCTG
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Coding sequence (CDS) from alignment at C-linearis_contig81:733125..733513+

>mRNA_C-linearis_contig81.15971.1 ID=mRNA_C-linearis_contig81.15971.1|Name=mRNA_C-linearis_contig81.15971.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at C-linearis_contig81:733125..733513+ (Chordaria linearis ClinC8C monoicous)
ATGAGCTGTTCGTGTGTGCTCGTGCTTTCGGTACTGGCGAAACGGCGGAG
GACCAGACCACCACACATACATGTTCCATCATGTAGTCGCATCGTATACG
ATCGGCACGTGAGCTGTAGGCGTAAATGTTGTTGTATGTCAGAGAAGGTT
GACTCTAATACTTGTTGGGTGTCGTGTATTCAGAAATATAGACGATGCGC
ACCCCAACAGCACCGAGTAGGAGCTTTTCGTGTGTGCTCGTGCTTCGGGT
ACTGGCGAAACGGCGGAGAAGCAGATCACCATCCATGGTCAATCATGTAG
ATGAGCTGTTCGTGTGTGCTCGTGCTTTCGGTACTGGCGAAACGGCGGAG
GACCAGACCACCACACATACATGTTCCATCATGTAGTCGCATCGTATACG
ATCGGCACGTGAGCTGTAGGCGTAAATGTTGTTGTATGTCAGAGAAGGTT
GACTCTAATACTTGTTGGGTGTCGTGTATTCAGAAATATAGACGATGCGC
ACCCCAACAGCACCGAGTAGGAGCTTTTCGTGTGTGCTCGTGCTTCGGGT
ACTGGCGAAACGGCGGAGAAGCAGATCACCATCCATGGTCAATCATGTAG
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