mRNA_C-linearis_contig81.15970.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig81.15970.1 vs. uniprot
Match: A0A6H5L3W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3W5_9PHAE) HSP 1 Score: 294 bits (753), Expect = 3.730e-92 Identity = 155/249 (62.25%), Postives = 182/249 (73.09%), Query Frame = 1
Query: 199 GENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVVYGSFQMTSESAGDGVDILAHMLVPPCLMVTDIPCMMAPIAQRLHPGMLQDGGALPRDSEGQVCLKELQHLGAHARGFPDLHEVKAPPLGYPFASTSSASEPNPVQPVLTVYAAYAA-----AETMPGVQPHVEFRTLLRRSAAAKGSSSGVTDRSSSPNRISDLAENILQSLHKRGWYAMTLFEVVLMFAFWFQGAG-ATAXXXXXXXXAGGEG 927
GE GEGERCSKLF+GKPSGTTAG EG TTDG+ VYG+FQ+T ESA D VDILAH+LV PCL++TDIPC + PIA+RL PG+LQDGG LPRD+EGQVCLKELQH+GAHA FPD HEVK PP+G+P A+ + + +PVQ AET PGVQPHV+FR+LLRR+A A+ + V D SSS RISDLAE+ L LHKRGWYAMTL+EVVL++ WFQ G AT AG EG
Sbjct: 2 GEQGEGERCSKLFVGKPSGTTAGVEGFFTTDGVFVYGTFQVTPESAADVVDILAHILVQPCLVITDIPCKIVPIAERLFPGLLQDGGVLPRDAEGQVCLKELQHIGAHAYEFPDEHEVKVPPMGFPTAAFTLGA--SPVQXXXXXXXXXXXXXXXXAETAPGVQPHVDFRSLLRRAADAQDRARTVADPSSSLMRISDLAESTLNGLHKRGWYAMTLYEVVLLYYLWFQATGWATPEGEAPGAVAGAEG 248
BLAST of mRNA_C-linearis_contig81.15970.1 vs. uniprot
Match: D8LKH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH0_ECTSI) HSP 1 Score: 280 bits (716), Expect = 2.180e-87 Identity = 155/283 (54.77%), Postives = 187/283 (66.08%), Query Frame = 1
Query: 34 GALLLALGDGAITDLKTKTNDDLKNIYRLCY--RSGISRYNTKDLLVECLTTLWKSTGENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVVYGSFQMTSESAGDGVDILAHMLVPPCLMVTDIPCMMAPIAQRLHPGMLQDGGALPRDSEGQVCLKELQHLGAHARGFPDLHEVKAPPLGYPFASTSSASEPNPVQPVLTVYAAYAAAETMPGVQPHVEFRTLLRRSAAAKGSSSGVTDRSSSPNRISDLAENILQSLHKRGWYAMTLFEVVLMFAFWFQGA 876
G L+ ALGD AITDL +K+ DLKNIY LC+ R GISR+ KD LV+C LW S G GERCSKLFIGK GTTAG EG T DG++ FQ+ +ESA D VD+ AH LVPP LM+TDIPCM+APIA+RLHP +L++ G LPRD++G V L LQHLGAHA FPD H VK P +P SSA++ V +YA YA A QPHV F LL+RSA + +++ V D SS R LAEN L SLH++G YAMTLFEVV +F+ W A
Sbjct: 164 GELVKALGDDAITDLSSKSFADLKNIYTLCFAGRKGISRFRNKDALVQCFQELWISRDGGGAGERCSKLFIGKQPGTTAGVEGAFTPDGVMYANVFQIAAESAADAVDVSAHFLVPPSLMITDIPCMLAPIAERLHPWLLENEGRLPRDADGVVSLPALQHLGAHAHEFPDEHSVKFPTESFPSPPPSSATD----VVVDNIYAVYADANFSLPAQPHVNFGALLQRSA--RSATAEVGDTSSLSKRFCTLAENQLISLHQQGCYAMTLFEVVAVFSAWLHRA 440
BLAST of mRNA_C-linearis_contig81.15970.1 vs. uniprot
Match: A0A6H5JUN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN3_9PHAE) HSP 1 Score: 276 bits (705), Expect = 1.560e-86 Identity = 159/318 (50.00%), Postives = 202/318 (63.52%), Query Frame = 1
Query: 22 RAGTGALLLALGDGAITDLKTKTNDDLKNIYRLCY-----------------RSGISRYNTKDLLVECLTTLWKSTGENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVVYGSFQMTSESAGDGVDILAHMLVPPCLMVTD-IPCMMAPIAQRLHPGMLQDGGALPRDSEGQVCLKELQHLGAHARGFPDLHEVKAPPLGYPF-ASTSSASEPNPVQPVLTVYAAYAAAETMPGVQPHVEFRTLLRRSA----------AAKGSSSGVTDRSSSPNRISDLAENILQSLHKRGWYAMTLFEVVLMFAFWFQGAGATA 888
R G LL ALGDGAITDL KT DDL+NIYRLCY R + R+ +LL++CLT W+S G G+ ERCS++FIGKPSG T G EG+ TDG++ FQ+ ESA DGVDI++H + P + P GGALPR++E QVCLKELQH+GA A FPDL+EV+ PP+ +P +T+SAS+ +P Q V TVYAAYA + MPGVQPH++FR LL+R+ A +G++SGV D SSS RI+DLAE+ L+SLHK+GW+AMTLFEVVLM+ WFQ A A
Sbjct: 47 RGDAGDLLRALGDGAITDLSNKTKDDLQNIYRLCYPPPARVSASDFWSRQRTRPCVQRFPPLELLIQCLTRPWESAGI-GDRERCSRIFIGKPSGLTTGVEGLFGTDGVLYALVFQVARESAADGVDIISHRQSSTTMPADHGYPMHDCTHCREASPRSTPGGGALPRNAELQVCLKELQHVGARAYEFPDLNEVRVPPMEFPSPTTTASASDAHPAQSVPTVYAAYAVGQPMPGVQPHLDFRALLQRACDVVERNREVHATEGNASGV-DWSSSAKRIADLAESTLKSLHKQGWHAMTLFEVVLMYMLWFQAAAHAA 362
BLAST of mRNA_C-linearis_contig81.15970.1 vs. uniprot
Match: A0A6H5JKI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKI4_9PHAE) HSP 1 Score: 199 bits (505), Expect = 2.180e-54 Identity = 107/188 (56.91%), Postives = 130/188 (69.15%), Query Frame = 1
Query: 355 LAHMLVPPCLMVTDIPCMMAPIAQRLHPGMLQDGGALPRDSEGQVCLKELQHLGAHARGFPDLHEVKAPPLGYPFASTSSASEPNPVQPVLTVYAAYAAAETMPGVQPHVEFRTLL-------------RRSAAAKGSSSGVTDRSSSPNRISDLAENILQSLHKRGWYAMTLFEVVLMFAFWFQGAG 879
+A V PCL++TDIPCM+APIA + HP +L +GGALPR++EGQV LK LQH+GA AR FPDLH VK PP G+ A+ SSA QPV VYA YAAAE PGVQ ++FRTLL R + A+G +G +D SSSP RIS+LAEN L SLH +GWYA+ LFEVVL+F+ WFQ AG
Sbjct: 10 IATTKVQPCLVITDIPCMLAPIADKNHPDLLDEGGALPRNAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFTSATASSALG---AQPVHNVYAVYAAAEPPPGVQAQLDFRTLLGHHSDMVEKDRQLRAAPDAEGDVTGASDWSSSPKRISELAENTLASLHNQGWYAIDLFEVVLVFSLWFQAAG 194
BLAST of mRNA_C-linearis_contig81.15970.1 vs. uniprot
Match: A0A6H5JV99_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV99_9PHAE) HSP 1 Score: 187 bits (476), Expect = 3.070e-53 Identity = 101/177 (57.06%), Postives = 123/177 (69.49%), Query Frame = 1
Query: 370 VPPCLMVTDIPCMMAPIAQRLHPGMLQDGGALPRDSEGQVCLKELQHLGAHARGFPDLHEVKAPPLGYPFASTSSASEPNPVQPVLTVYAAYAAAETMPGVQPHVEFRTLL-------------RRSAAAKGSSSGVTDRSSSPNRISDLAENILQSLHKRGWYAMTLFEVVLMFAF 861
V PCL++TDIPC++APIA + HP +L +GGALPR +EGQV LK LQH+GA AR FPDLH VK PP G+P A+ SSA QPV VYA YAAAE PGVQ ++FRTLL R + A+G +G +D SSSP RIS+LAEN L SLH +GWYA+ LFEVVL++ F
Sbjct: 15 VQPCLVITDIPCVLAPIADKNHPDLLDEGGALPRSAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFPSATASSALG---AQPVHNVYAVYAAAEPPPGVQAQLDFRTLLGHHSDMVEKDRQLRAAPDAEGDVTGASDWSSSPKRISELAENTLASLHNQGWYAIDLFEVVLVWRF 188
BLAST of mRNA_C-linearis_contig81.15970.1 vs. uniprot
Match: A0A6H5K5W4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5W4_9PHAE) HSP 1 Score: 188 bits (478), Expect = 3.450e-51 Identity = 109/241 (45.23%), Postives = 147/241 (61.00%), Query Frame = 1
Query: 166 VECLTTLWKSTGENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVVYGSFQMTSESAGDGVDILAHMLVPPCLMVTDIPCMMAPIAQRLHPGMLQDGGALPRDSEGQVCLKELQHLGAHARGFPDLHEVKAPPLGYPFASTSSASEPNPVQPV-LTVYAAYAAAETMPGVQPHVEFRTLLRRSAAAKGSS---SGVTDRSSSPNRISDLAENILQSLHKRGWYAMTLFEVVLMFAFWFQGA 876
+ C LW+ E +RCSK+FI +PSG TAG EG+ T DG+V Q+ + P ++VTDIPCM+AP A++ PG+LQ+GGALPR+++GQV L LQH+GA +PD HEV+ PP G F S S++S PV + VY A+A A + P VQPH++F LL+ + + G D SSSP RIS+LAE L+ LH++G YA+ LFEVVL +A WFQ A
Sbjct: 93 IGCFQQLWRFALGPDEADRCSKVFIVRPSGKTAGVEGLFTPDGVVNSHLLQVVDLEPLWTPCGTWRAIATPSVLVTDIPCMVAPNAEKNVPGLLQNGGALPRNAKGQVSLPGLQHIGARGYDYPDRHEVRVPPTGCAFVSASASSTAPPVDQLRYNVYDAFATALSGP-VQPHIDFSALLKHAGDVVERNRQVQGTDDWSSSPKRISELAETSLRYLHQQGCYALNLFEVVLAYALWFQEA 332
BLAST of mRNA_C-linearis_contig81.15970.1 vs. uniprot
Match: A0A6H5KBD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBD1_9PHAE) HSP 1 Score: 147 bits (370), Expect = 1.290e-37 Identity = 87/174 (50.00%), Postives = 107/174 (61.49%), Query Frame = 1
Query: 406 MMAPIAQRLHPGMLQDGGALPRDSEGQVCLKELQHLGAHARGFPDLHEVKAPPLGYPFASTSSASEPNPVQPVLTVYAAYAAAETMPGVQPHVEFRTLL-------------RRSAAAKGSSSGVTDRSSSPNRISDLAENILQSLHKRGWYAMTLFEVVLMFAFWFQGAGATA 888
M+ PIA + H +L +GGALPR++EGQV LK LQH+GA AR FPDLH VK PP G+P A+ SSA QPV VYA ++FRTLL R + A+G +G +D SSSP RIS+LAEN L SLH +GW A+ LFEVVL+F+ WFQ AG A
Sbjct: 1 MLPPIADKNHADLLDEGGALPRNAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFPSATASSALG---AQPVHNVYA--------------LDFRTLLGHHADMVEKDRQVRAAPDAEGDVTGASDWSSSPKRISELAENTLTSLHNQGWDAIDLFEVVLVFSLWFQAAGRQA 157
BLAST of mRNA_C-linearis_contig81.15970.1 vs. uniprot
Match: A0A6H5KB28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB28_9PHAE) HSP 1 Score: 140 bits (354), Expect = 1.790e-35 Identity = 73/121 (60.33%), Postives = 89/121 (73.55%), Query Frame = 1
Query: 34 GALLLALGDGAITDLKTKTNDDLKNIYRLCY--RSGISRYNTKDLLVECLTTLWKSTGENGEGERCSKLFIGKPSGTTAG-FEGVLTTDGIVVYGSFQMTSESAGDGVDILAHMLVPPCLM 387
G L+ ALGDGAITDL K DL+NIYRLC+ GIS Y TK+LLV+CL LW+S G +GEGERCSKLFIGKPSG+TAG EG+ T D ++V FQ+T+ES D VD+L H+LV C +
Sbjct: 189 GELMRALGDGAITDLSDKPVSDLENIYRLCFIDGKGISMYPTKELLVQCLQKLWESAGADGEGERCSKLFIGKPSGSTAGGVEGLFTGDRVMVAHVFQITAESPADAVDMLVHLLVTYCTL 309
BLAST of mRNA_C-linearis_contig81.15970.1 vs. uniprot
Match: A0A6H5KLN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN2_9PHAE) HSP 1 Score: 140 bits (354), Expect = 2.850e-34 Identity = 70/111 (63.06%), Postives = 83/111 (74.77%), Query Frame = 1
Query: 370 VPPCLMVTDIPCMMAPIAQRLHPGMLQDGGALPRDSEGQVCLKELQHLGAHARGFPDLHEVKAPPLGYPFASTSSASEPNPVQPVLTVYAAYAAAETMPGVQPHVEFRTLL 702
V PCL++TD PCM+APIA + HP +L +GGALPR++EGQV LK LQH+GA AR FPDLH VK PP G+P A+ SSA QPV VYA YAAAE PGVQ ++FRTLL
Sbjct: 15 VQPCLVITDTPCMLAPIADKNHPDLLDEGGALPRNAEGQVSLKGLQHIGARARDFPDLHSVKVPPGGFPSATASSALG---AQPVHNVYAVYAAAEPSPGVQAQLDFRTLL 122
BLAST of mRNA_C-linearis_contig81.15970.1 vs. uniprot
Match: A0A6H5JEL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL5_9PHAE) HSP 1 Score: 134 bits (337), Expect = 1.960e-33 Identity = 70/122 (57.38%), Postives = 86/122 (70.49%), Query Frame = 1
Query: 34 GALLLALGDGAITDLKTKTNDDLKNIYRLCYRSG--ISRYNTKDLLVECLTTLWKSTGENGEGERCSKLFIGKPSGTTAGFEGVLTTDGIVVYGSFQMTSESAGDGVDILAHMLVPPCLMVT 393
G L+ ALGDGAITDL K+ DLKNIYRLC+ G IS Y TK+LL +CL LW+ +GEGERC KLFIGKPSG+TAG EG+ T DG++ FQ+T+ES D VD+L H+ V C + T
Sbjct: 127 GELMRALGDGAITDLSDKSFGDLKNIYRLCFPDGKGISMYPTKELLAQCLQKLWELA--DGEGERCLKLFIGKPSGSTAGVEGLFTGDGVMAAHVFQITAESPADAVDMLVHLPVSYCTLST 246 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig81.15970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig81.15970.1 >prot_C-linearis_contig81.15970.1 ID=prot_C-linearis_contig81.15970.1|Name=mRNA_C-linearis_contig81.15970.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=331bp WRLREVLRAGTGALLLALGDGAITDLKTKTNDDLKNIYRLCYRSGISRYNback to top mRNA from alignment at C-linearis_contig81:729194..730809- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig81.15970.1 ID=mRNA_C-linearis_contig81.15970.1|Name=mRNA_C-linearis_contig81.15970.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1616bp|location=Sequence derived from alignment at C-linearis_contig81:729194..730809- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig81:729194..730809- >mRNA_C-linearis_contig81.15970.1 ID=mRNA_C-linearis_contig81.15970.1|Name=mRNA_C-linearis_contig81.15970.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1986bp|location=Sequence derived from alignment at C-linearis_contig81:729194..730809- (Chordaria linearis ClinC8C monoicous)back to top |