mRNA_C-linearis_contig81.15962.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig81.15962.1
Unique NamemRNA_C-linearis_contig81.15962.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig81.15962.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig81contigC-linearis_contig81:614703..615639 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size188
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930605.1730304-CDS-C-linearis_contig81:614703..6148431622930605.1730304-CDS-C-linearis_contig81:614703..614843Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 614704..614843 -
1690881155.949363-CDS-C-linearis_contig81:614703..6148431690881155.949363-CDS-C-linearis_contig81:614703..614843Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 614704..614843 -
1622930605.201623-CDS-C-linearis_contig81:615593..6156391622930605.201623-CDS-C-linearis_contig81:615593..615639Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 615594..615639 -
1690881155.9597218-CDS-C-linearis_contig81:615593..6156391690881155.9597218-CDS-C-linearis_contig81:615593..615639Chordaria linearis ClinC8C monoicousCDSC-linearis_contig81 615594..615639 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig81.15962.1prot_C-linearis_contig81.15962.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig81 614704..615639 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig81.15962.1

>prot_C-linearis_contig81.15962.1 ID=prot_C-linearis_contig81.15962.1|Name=mRNA_C-linearis_contig81.15962.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=62bp
VVLLLGQQHGWASGTSTCASVIISDVRDLDGTYTLDSSISYPYYFRAGGT
TTYELYQSSGAW
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mRNA from alignment at C-linearis_contig81:614703..615639-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig81.15962.1 ID=mRNA_C-linearis_contig81.15962.1|Name=mRNA_C-linearis_contig81.15962.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=937bp|location=Sequence derived from alignment at C-linearis_contig81:614703..615639- (Chordaria linearis ClinC8C monoicous)
GTGGTTCTGCTCCTAGGGCAGCAGCACGGGTGGGCCTCTGGAACATGTGA
GCACGTCCGTTCTAAATCCCACCTTAGTGTTGCCCGTGAAGGCACAAGAT
CTACGATCGCCCGGCATGTGGACAACGGGTGTACTTGATGTAGGAGAATG
AAGGCTTTGTCCGTCGAAGTGGATGGTTGTGGATGATTTGTATGGGATCA
TCCACATTTGGTGACATACAAATTATATGTATCTTGGACTCTTTTGCCAT
ATTTTGGATGGACGACTTACACACGAGTGAAAGGAAGAAGCTTACATTGC
TTGCATCGCTCCCTGAGAGCGTGTGCGGTAAACGAAAAGATCAAGATGGA
AAACAATGCAATCGTCTGCGAAAGATGCTGGTCTGAGCGTATCGGAACCT
TGAGGCCAGATGCGTACGTCTGGTGGCTCGAACCAGCTGCTGTTTCAAAA
AAGATTAAAAAAATATTGAAGTGTATTGCGACTGGGGGTGCTCCGCTATC
TCGACAATACCGAAACGCCGGGACGGTCGAGCGCTCGTAGTATGCAGCGC
CTTTGCTGTATCCGGAGATGGAAAAGAATGCTACAACATCGCTGGTCTTT
TCGGCATCCTCGTAAGTTGTTGAAAAATCATGATGATAAGGCACGAGGTT
CGATTTTTGGAAGATACTCCAGCTGTGCGAAATGAGCAACATCCAGCTGC
ACTGCCTTCGGCTGCATTGCTTTGGCAGCGCTTACGGTTCAGTTCCAAAC
TGCTAACAATTTGCACCTGATCGTTGTCCGAATTCAACTGCTGCAGCTAC
GTGCGCCAGCGTTATTATTTCTGACGTTCGGGACCTGGACGGAACGTACA
CCTTAGACTCCTCCATATCTTACCCCTACTACTTCAGGGCTGGGGGTACC
ACAACCTATGAACTATACCAATCTTCTGGCGCCTGGT
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Coding sequence (CDS) from alignment at C-linearis_contig81:614703..615639-

>mRNA_C-linearis_contig81.15962.1 ID=mRNA_C-linearis_contig81.15962.1|Name=mRNA_C-linearis_contig81.15962.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at C-linearis_contig81:614703..615639- (Chordaria linearis ClinC8C monoicous)
GTGGTTCTGCTCCTAGGGCAGCAGCACGGGTGGGCCTCTGGAACATGTGG
TTCTGCTCCTAGGGCAGCAGCACGGGTGGGCCTCTGGAACATCTACGTGC
GCCAGCGTTATTATTTCTGACGTTCGGGACCTGGACGGAACGTACACCTT
AGACTCCTCCATATCTTACCCCTACTACTTCAGGGCTGGGGGTACCACAA
CCTATGAACTATACCAATCTTCTGGCGCCTGGCTACGTGCGCCAGCGTTA
TTATTTCTGACGTTCGGGACCTGGACGGAACGTACACCTTAGACTCCTCC
ATATCTTACCCCTACTACTTCAGGGCTGGGGGTACCACAACCTATGAACT
ATACCAATCTTCTGGCGCCTGG
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