mRNA_C-linearis_contig81.15952.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig81.15952.1 vs. uniprot
Match: D8LMA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMA1_ECTSI) HSP 1 Score: 421 bits (1082), Expect = 1.970e-134 Identity = 379/642 (59.03%), Postives = 427/642 (66.51%), Query Frame = 1
Query: 1 VRALMRSVAELKKKLVLATAQGKDHRRSAMIRAMRTRLREQELVVDVVKEELSNKTGMGQEETNDWVIRKTVGGPLRFRPKTREELQNELYRLEKQHRQALNKLKVRSRAG-RGVGVNVEAATTEGRPPAQLEAQDIPDEGADQQQDQQAGGTEGLMRLSEALEEVDALRVSVQSRDAALQAQAQTVDQLQLETRELRGVQERLARKERRARDLKKKNAHLGEQHTALLEDYEGNDRSFIHHLKAQLALRKEEALAEADEFREHSLRQAEEVSVLLKREEELATALEEEAASRQRERREQHRNTRQAVSRAEAAEKSLQASEREGRRTREQNQTMLAELQRLGKEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEEALRASKARRERGGMLELLETEKQRKEVLTREASEVRVLLEEERARLEAERKRADEQDEARRRLESLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEAFAALLATEKQKGDEIAAGESRRTSAEVAEAAGAEXXXXXKSRALTESEEIIEEMETELREQADQITRLEEEKHVLERNLESATKVADELRVKNSSLTAQLNAAVAT--AXXXXXXXXXXXXXXXXXSARKDDNSTPPSPRRHLRPSTAAEEK 1917
VR+LMRSVAELKK+L LATAQGKDHRRSAMIRAMRTRLREQ+LVVDV+KEEL KTGMG+EETNDWVIRKTVGGPLRFRPKTREELQNELYRLE+++RQAL+KLK R G R G V TTE R +LE Q DQQ T LMRLSEALEEVDALRVSV+SRDAALQAQA+ +DQLQLE R+LRGVQE+L RKERRAR+LK+K+A+LGEQHTALLED+E + + HLKAQLALRKEEALAEADEFRE SLRQAEEV VLLKREEEL+TALEEE ASR RQAV+RAEAAEKSLQ S ++ R RE+N+TM+AELQRLGKEA XXXXXXXXXXXXXXXXXXX E + + A E++VLL E+ A LEAE+K XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX + E K LTESEEIIEEME+ELREQAD++ LEEE+ L+ LESA K AD+L KN++LTAQL AA AT A S+RK + S P SPRR LRP ++AEEK
Sbjct: 64 VRSLMRSVAELKKRLALATAQGKDHRRSAMIRAMRTRLREQDLVVDVIKEELGLKTGMGKEETNDWVIRKTVGGPLRFRPKTREELQNELYRLERKYRQALDKLKTRRTGGDRDEGGVV--GTTEERSRVELEGQGXXXXDTDQQ-----ASTRELMRLSEALEEVDALRVSVRSRDAALQAQAEAIDQLQLEKRDLRGVQEKLGRKERRARELKRKHANLGEQHTALLEDFEASQEQ-VDHLKAQLALRKEEALAEADEFREQSLRQAEEVGVLLKREEELSTALEEEVASRXXXXXXXXHADRQAVARAEAAEKSLQVSVKQETRLREKNKTMMAELQRLGKEAGEAAXXXXXXXXXXXXXXXXXXXAEARQGRLE---------EARQKGATAXXXXXXXXXXXXXXXXXXXXXXXXXXEMKVLLGEKLALLEAEKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGDKDTE----RDDEAGKKFDLTESEEIIEEMESELREQADRVFSLEEEQQALKLQLESAKKAADDLSAKNAALTAQLKAAPATSPADPAAAVTAGAETEAEPASSRKLEESIPGSPRRPLRPCSSAEEK 684
BLAST of mRNA_C-linearis_contig81.15952.1 vs. uniprot
Match: A0A7S1C3S2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C3S2_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 6.960e-21 Identity = 54/98 (55.10%), Postives = 74/98 (75.51%), Query Frame = 1
Query: 1 VRALMRSVAELKKKLVLATAQGKDHRRSAMIRAMRTRLREQELVVDVVKEELSNKTGMGQEETNDWVIRKTVGGPLRFRPKTREELQNELYRLEKQHR 294
VR+LM+S+A L+ K+ TA+ KDHRRS I+A++ ++RE EL DV+K EL ++ GM EE D+V+RKTVGGP RFRPKTREEL+ ++ LEK+ R
Sbjct: 18 VRSLMKSIATLRDKVATLTAESKDHRRSGQIQALKGKVREAELASDVLKAELRDRLGMTAEEVADFVVRKTVGGPKRFRPKTREELELQVSSLEKRVR 115
BLAST of mRNA_C-linearis_contig81.15952.1 vs. uniprot
Match: A0A2D4C1R3_PYTIN (Aa_trans domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1R3_PYTIN) HSP 1 Score: 108 bits (271), Expect = 7.380e-21 Identity = 87/240 (36.25%), Postives = 140/240 (58.33%), Query Frame = 1
Query: 1 VRALMRSVAELKKKLVLATAQGKDHRRSAMIRAMRTRLREQELVVDVVKEELSNKTGMGQEE---TNDWVIRKTVGGPLRFRPKTREELQNELYRLEKQHRQALNKL-KVRSRAGRGVGVNVEAATTEGRPPAQLEAQDIPDEG----ADQQQDQQAGGTEGLMRLSEALEEVDALRVSVQSRDAALQAQAQTVDQLQLETRELRGVQERLARKERRARDLKKKNAHLGEQHTALLEDYE 696
VR+LMRS+ +L++++ Q K+HRRSA+I+++R REQEL++D++K+ L+ K QE ND++++K VG PLRFRPKTREEL+NEL L+ ++++A+ L KV+ A R AT G+ +D DE + QQ QQ ++ EE+D L+V + S+ + QA + +L E +LR ++ERL RK+++ L+ K + L + + LL + E
Sbjct: 92 VRSLMRSINQLQEQIQQLKTQDKEHRRSALIQSLRQSQREQELLIDILKQTLAEKVPEFQESRELVNDFILKKAVGAPLRFRPKTREELENELEVLDGKYKRAVENLQKVKEDASRA------PATARGQRSIAESKRDDEDESPAIVSRQQASQQQPVAPVVITDPSLQEEIDRLKVELASKAMTIHTQADELHELMGELDKLRILEERLERKQQKITLLEDKVSQLQQDNVKLLHEKE 325
BLAST of mRNA_C-linearis_contig81.15952.1 vs. uniprot
Match: A0A1V9Z379_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z379_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.440e-20 Identity = 75/213 (35.21%), Postives = 128/213 (60.09%), Query Frame = 1
Query: 1 VRALMRSVAELKKKLVLATAQGKDHRRSAMIRAMRTRLREQELVVDVVKEELSNKTGMGQEE---TNDWVIRKTVGGPLRFRPKTREELQNELYRLEKQHRQALNKLKVRSRAGRGVGVNVEAATTEGRPPAQLEAQDIPDEGADQQQDQQAGGTE-----GLMRLSEALEEVDALRVSVQSRDAALQAQAQTVDQLQLETRELRGVQERLAR 615
VR+LM+S+ +L++++ +Q K+HRRSA+I+++R + REQ+L++DV+KE L+ K Q+ N+++++KT+GGP RFRPKTREEL+ E L+K++++AL K+ + +AA PAQ + + + + DQ A G E ++ EEVD LR+++ S+D L AQ Q ++ LQ + +L +Q++ R
Sbjct: 72 VRSLMKSIHQLQEQVSAMQSQDKEHRRSALIQSLRKKQREQDLLIDVLKESLATKAPEFQDSIPLVNEFILKKTLGGPKRFRPKTREELELEFLELDKKYKRALQNAKLAKQG--------QAAKKADEVPAQDDPETVESDVVDQVI---ASGAEFKQFREYQEITALREEVDRLRITIASKDVNLNAQLQQIELLQQQVAQLLTIQDKFER 273
BLAST of mRNA_C-linearis_contig81.15952.1 vs. uniprot
Match: A0A8J5M0G0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5M0G0_9STRA) HSP 1 Score: 105 bits (263), Expect = 2.320e-20 Identity = 92/290 (31.72%), Postives = 161/290 (55.52%), Query Frame = 1
Query: 1 VRALMRSVAELKKKLVLATAQGKDHRRSAMIRAMRTRLREQELVVDVVKEELSNKTGMGQEE---TNDWVIRKTVGGPLRFRPKTREELQNELYRLEKQHRQALNKLKVRSRAGRGVGVNVEAATTEGRPPAQLEAQDIPDEGADQQQDQQAGGTEGLMRLSEAL-EEVDALRVSVQSRDAALQAQAQTVDQLQLETRELRGVQERLARKERRARDLKKKNAHLGEQHTALLEDYEGNDRSFIHHLKAQLALRKEEALAEADEFREHSLRQAEEVSVLLKREEELATALE 858
VRALMRS+ +L++++ AQ K+HRRSA+I+ +RT+ REQ+L++DV+K+ L K Q+ ND+V++K+ GGP+RFRPKTREEL+NEL L + ++ + K K S+ AA E +P D+G + + ++ T + EAL EE++ LR + S+ + AQA+ + ++ E +L V++++ RK+ + L+++ + L+++ E ++ L+ + ++ + +A E L+Q E + +L RE EL LE
Sbjct: 87 VRALMRSINQLQEQIQGLKAQEKEHRRSALIQDLRTQQREQDLLIDVLKQTLQEKVSEFQDSRALVNDFVLKKSAGGPMRFRPKTREELENELQALGQNFQRTVEKFKQDSQRN--------AAPKEEKPHDS-------DKGDEDEMTEEKNATNQNVAADEALYEELEQLRAQLASKSVTIHAQAEEMAEVYAELDKLTVVEDQIVRKKHKIALLREQLERQQADNVELVQEKEELAEKYLQ-LQEETQFLRDITMEDAGAKDEERLQQLELIQMLHSRELELQDELE 360
BLAST of mRNA_C-linearis_contig81.15952.1 vs. uniprot
Match: A0A329RM55_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RM55_9STRA) HSP 1 Score: 105 bits (261), Expect = 4.140e-20 Identity = 92/290 (31.72%), Postives = 161/290 (55.52%), Query Frame = 1
Query: 1 VRALMRSVAELKKKLVLATAQGKDHRRSAMIRAMRTRLREQELVVDVVKEELSNKTGMGQEE---TNDWVIRKTVGGPLRFRPKTREELQNELYRLEKQHRQALNKLKVRSRAGRGVGVNVEAATTEGRPPAQLEAQDIPDEGADQQQDQQAGGTEGLMRLSEAL-EEVDALRVSVQSRDAALQAQAQTVDQLQLETRELRGVQERLARKERRARDLKKKNAHLGEQHTALLEDYEGNDRSFIHHLKAQLALRKEEALAEADEFREHSLRQAEEVSVLLKREEELATALE 858
VRALMRS+ +L++++ AQ K+HRRSA+I+ +RT+ REQ+L++DV+K+ L K Q+ ND+V++K+ GGP+RFRPKTREEL+NEL L + ++ + K K S+ AA E +P D+G ++ ++ T + EAL EE++ LR + S+ + AQA+ + ++ E +L V++++ RK+ + L+++ + L+++ E ++ L+ + ++ + +A E L+Q E + +L RE EL LE
Sbjct: 87 VRALMRSINQLQEQIQGLKAQEKEHRRSALIQDLRTQQREQDLLIDVLKQTLQEKVSEFQDSRALVNDFVLKKSAGGPMRFRPKTREELENELQALGQNFQRIVEKFKQDSQRN--------AAPKEEKPHDS-------DKGDGDEKTEEKNATNQNVAADEALYEELEQLRAQLASKSVTIHAQAEEMAEVYAELDKLTVVEDQIVRKKHKIALLREQLERQQADNVELVQEKEELAEKYLQ-LQEETQFLRDITMEDAGAKDEERLQQLELIQMLRSRELELQDELE 360
BLAST of mRNA_C-linearis_contig81.15952.1 vs. uniprot
Match: W2RBF8_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RBF8_PHYPN) HSP 1 Score: 104 bits (259), Expect = 7.450e-20 Identity = 94/289 (32.53%), Postives = 154/289 (53.29%), Query Frame = 1
Query: 1 VRALMRSVAELKKKLVLATAQGKDHRRSAMIRAMRTRLREQELVVDVVKEELSNKTGMGQEE---TNDWVIRKTVGGPLRFRPKTREELQNELYRLEKQHRQALNKLKVRSRAGRGVGVNVEAATTEGRPPAQLEAQDIPDEGADQQQDQQAGGTEGLMRLSEALEEVDALRVSVQSRDAALQAQAQTVDQLQLETRELRGVQERLARKERRARDLKKKNAHLGEQHTALLEDYEGNDRSFIHHLKAQLALRKEEALAEADEFREHSLRQAEEVSVLLKREEELATALE 858
VRALMRS+ +L+++L AQ K+HRRSA+I+ +RT+ REQEL++DV+K+ L K Q+ ND+V++KT GGP+RFRPKTREEL+NEL L + ++ + KLK S+ AA E +P D+ T + EE++ LR V S+ + AQA+ + ++ E +LR V++++ RK+ + L+++ + L+++ E ++ L+ + ++ + +A E L+Q E + L RE EL LE
Sbjct: 87 VRALMRSINQLQEQLQGLKAQEKEHRRSALIQDLRTQQREQELLIDVLKQTLQEKVSEFQDSRALVNDFVLKKTAGGPMRFRPKTREELENELQTLGQNFQRTVEKLKQDSQRN--------AAPKEEKPYEN-------DQXXXXXXXXXXXDTNNPTADAALYEELEQLRAQVASKSVTIHAQAEEMTEVYTELDKLRVVEDQIVRKKHKIALLREQLERQQADNVELVQEKEELAEKYLQ-LQEETQFLRDITMEDAGAKDEERLQQLELIQTLRSRELELQDELE 359
BLAST of mRNA_C-linearis_contig81.15952.1 vs. uniprot
Match: A0A662YGA9_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YGA9_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.410e-18 Identity = 93/300 (31.00%), Postives = 160/300 (53.33%), Query Frame = 1
Query: 1 VRALMRSVAELKKKLVLATAQGKDHRRSAMIRAMRTRLREQELVVDVVKEELSNKTGMGQEE---TNDWVIRKTVGGPLRFRPKTREELQNELYRLEKQHRQALNKLKVRSRAGRGVGVNVEAATTEGRPPA---------QLEAQDIPDEGADQQQDQQAGGTEGLMRLSEALEEVDALRVSVQSRDAALQAQAQTVDQLQLETRELRGVQERLARKERRARDLKKKNAHLGEQHTALLEDYEGNDRSFIHHLKAQLALRKEEALAEADEFREHSLRQAEEVSVLLKREEELATALEEE 864
VRALMRS+ +L+++L+ Q K+HRRSA+I+ +RT+ REQEL++DV+K+ L K Q+ ND+V++K VG PLRFRPKTREEL+NEL L + ++ + +L+ ++ A E +P ++EA+ P D T G ++S LRV + S+ + AQA + +L + +LR V++++ RK+ + L+++ + ++ L+ + E ++ L+ ++ ++ + +A E L+Q E V L RE EL LE++
Sbjct: 31 VRALMRSIGQLQEQLLALKTQEKEHRRSALIQDLRTQQREQELLIDVLKQTLQEKVAEFQDSRALVNDFVLKKAVGAPLRFRPKTREELENELQTLGQTFQRTVERLRQDNQRN--------ATAKEEKPQLSDDXXXXXNEVEAKAAPFT------DNHGDSTAGTYQVSGVTRR---LRVELASKSVTIHAQADEIAELCSDLDKLRIVEDQIGRKKHKIALLREQLSRQHTENVELVHEKEAQAEKYLQ-LQEEVQFLRDINVEDASAKDEERLQQLELVQTLRARELELQGDLEQQ 312
BLAST of mRNA_C-linearis_contig81.15952.1 vs. uniprot
Match: A0A6A3EMB8_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3EMB8_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 2.430e-18 Identity = 57/109 (52.29%), Postives = 81/109 (74.31%), Query Frame = 1
Query: 1 VRALMRSVAELKKKLVLATAQGKDHRRSAMIRAMRTRLREQELVVDVVKEELSNKTGMGQEE---TNDWVIRKTVGGPLRFRPKTREELQNELYRLEKQHRQALNKLKV 318
VRALMRS+ +L+++L AQGK+HRRSA+I+ +RT+ REQEL++DV+K+ L K Q+ ND+V++K VG PLRFRPKTREEL+NEL L + ++ + KLK+
Sbjct: 87 VRALMRSINQLQEQLQALKAQGKEHRRSALIQELRTQQREQELLIDVLKQTLQEKVPEFQDSRALVNDFVLKKAVGAPLRFRPKTREELENELQALGQNFQRTVEKLKL 195
BLAST of mRNA_C-linearis_contig81.15952.1 vs. uniprot
Match: A0A5D6Y320_9STRA (Aa_trans domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y320_9STRA) HSP 1 Score: 100 bits (250), Expect = 2.550e-18 Identity = 93/239 (38.91%), Postives = 136/239 (56.90%), Query Frame = 1
Query: 1 VRALMRSVAELKKKLVLATAQGKDHRRSAMIRAMRTRLREQELVVDVVKEELSNKTG---MGQEETNDWVIRKTVGGPLRFRPKTREELQNELYRLEKQHRQALNKLKVRS--RAGRGVGVNVEAATTEGRPPAQLEAQDIPDEGADQQQDQQAGGTEGLMRLSEAL-EEVDALRVSVQSRDAALQAQAQTVDQLQLETRELRGVQERLARKERRARDLKKKNAHLGEQHTALLEDYEG 699
VRALM+S+ +L+++L AQ K+HRRSA+I+ +R LREQELV DV+K+ L+ K + N +V +K VGGPLRFRPKTREEL++EL +L+ ++R+AL L+V + R RG + + R A+D A ++++G L AL EEV+ LR+ + S+ + AQA V L E LR V ++L RK+RR L+ K A + L+ EG
Sbjct: 76 VRALMKSINQLQEQLQALRAQDKEHRRSALIQGLRQSLREQELVADVLKQTLAEKLPEFRASRALVNAFVAQKCVGGPLRFRPKTREELESELEQLDTKYRKALGSLRVSATEREQRGAQAKDRDSEAKCRETRGGRAEDD----ALMLGEEESGD---LCVPPPALQEEVERLRIELSSKAVTIHAQADEVALLYAEIDTLRVVHDKLERKKRRVALLEDKLASQQLETVRLVHASEG 307 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig81.15952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig81.15952.1 >prot_C-linearis_contig81.15952.1 ID=prot_C-linearis_contig81.15952.1|Name=mRNA_C-linearis_contig81.15952.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=640bp MRSVAELKKKLVLATAQGKDHRRSAMIRAMRTRLREQELVVDVVKEELSNback to top mRNA from alignment at C-linearis_contig81:374678..381336- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig81.15952.1 ID=mRNA_C-linearis_contig81.15952.1|Name=mRNA_C-linearis_contig81.15952.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6659bp|location=Sequence derived from alignment at C-linearis_contig81:374678..381336- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig81:374678..381336- >mRNA_C-linearis_contig81.15952.1 ID=mRNA_C-linearis_contig81.15952.1|Name=mRNA_C-linearis_contig81.15952.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3840bp|location=Sequence derived from alignment at C-linearis_contig81:374678..381336- (Chordaria linearis ClinC8C monoicous)back to top |