mRNA_C-linearis_contig80.15926.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15926.1
Unique NamemRNA_C-linearis_contig80.15926.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig80.15926.1 vs. uniprot
Match: B5LWM7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWM7_9PHYC)

HSP 1 Score: 262 bits (669), Expect = 1.120e-81
Identity = 126/245 (51.43%), Postives = 167/245 (68.16%), Query Frame = 1 
Query:   22 ISSQDGGLLIKLGFQDDVATGHFIGKVRTWCEFHELTLRVSDRAETMVCLGKYIAVADYVETETTSPAGAXXXXXXXSSEATFKTYVTEILEGRDEQCVYQSLEMADPWNQKDSCHLMAHSACKGKPVDEDPSNRLACSTQLHRGLDGTSDRYPPWIRIKVKNVENEPVPCFGKNGREHFRFRVNLLIDFHKDEQKLHHGICWKEGTKDDGEAPVETFVHVVNYDVFEKGVEWKFRDTTEIWESL 756
            ISS D GLL+KL F++    G F+  VR WC F+++ L      E    LG+++ + DYVE ET SP  +        S  +  ++VTEIL+ + E CVYQS+E A  ++QKD CHL+AH  CKG P+D DPSNRLACSTQLHR LDGTS R+PPW R+KVK V+  PV C G   ++H R+RV+L IDF  +E + +HG  WK+G++DDGE+PVETFV+V +YDVF   VEWK++ TT IW +L
Sbjct:  140 ISSHDNGLLVKLAFENQGMRGFFLNSVRRWCSFNKVDLGDIVYNEH-TNLGRFVFMGDYVEEETDSPPDSRARKRSRESAESLTSFVTEILDPKSELCVYQSVE-AQGYSQKDGCHLLAHCECKGTPMDSDPSNRLACSTQLHRALDGTSKRHPPWARVKVKGVDINPVLCEGVGVKQHNRYRVDLYIDFMSEEHRRNHGFYWKDGSRDDGESPVETFVYVKDYDVFTNCVEWKYKHTTAIWAAL 382
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BLAST of mRNA_C-linearis_contig80.15926.1 vs. uniprot
Match: G4YMK9_PHYSP (Crinkler domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YMK9_PHYSP)

HSP 1 Score: 63.5 bits (153), Expect = 1.480e-7
Identity = 51/165 (30.91%), Postives = 78/165 (47.27%), Query Frame = 1 
Query:  283 TEILEGRDEQCVYQSLEMADPW----NQKDSCHLMAHSACKGKP----VDEDPSNRLACSTQLHRGLDGTSDRYPPWIRIKVKNVENEPVPCFGKNGREHFRFRVNLLIDFHKDEQKLHHGICWKEG--TKDDGEAPVETFVHVVNYDVFEKGVEWKFRDTTEIW 747
            T I++   ++  YQ +E  D W     +  SCH+M+   CK  P     D DPSNRLA S ++H   D  S   P  ++I V++     V   G       R+++NL++            +  K+G    DDG   + TFV+V N  VF   +EWK ++T + W
Sbjct:  230 TSIVDVATDEFKYQRIEN-DEWFGTVGKAQSCHVMSREHCKKHPSYNNYDNDPSNRLALSAEMHEWFDARSFTVPT-LKISVESTSEGFV--IGN------RYKINLVVRAWNAGFAKLIALRLKDGFVLSDDG-LEMRTFVYVQNKKVFCDCMEWKRKETEKKW 383
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BLAST of mRNA_C-linearis_contig80.15926.1 vs. uniprot
Match: A0A329RTD1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329RTD1_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.300e-6
Identity = 50/167 (29.94%), Postives = 81/167 (48.50%), Query Frame = 1 
Query:  283 TEILEGRDEQCVYQSLEMADPW----NQKDSCHLMAHSACKG----KPVDEDPSNRLACSTQLHRGLDGTSDRYPPWIRIKVKNVENEPVPCFGKNGREHFRFRVNLLIDFHKDEQKLHHGICWKEG--TKDDGEAPVETFVHVVNYDVFEKGVEWKFRDTTEIWES 753
            T I++   ++  YQ +E ++ W     +  SCHLM+   C+        D D SNRLA ++ +H   DG S   P  + I V++V   PV   G       R++VNL++            +  KEG    +DG   + T V+V+N  VF + +EWK ++  + W+S
Sbjct:  126 TSIVDVVTDEFKYQRIE-SEEWFGTVGKAQSCHLMSREHCRRYASYHKYDNDQSNRLALTSDMHDWYDGRSFAVPV-MNISVESVSEGPV--VGS------RYKVNLIVRALNAGYARLISLHLKEGFVASEDG-LEMRTSVYVLNAKVFCECMEWKRKEIDKQWKS 281
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BLAST of mRNA_C-linearis_contig80.15926.1 vs. uniprot
Match: G5AGM6_PHYSP (Uncharacterized protein n=3 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AGM6_PHYSP)

HSP 1 Score: 55.8 bits (133), Expect = 2.260e-5
Identity = 55/194 (28.35%), Postives = 87/194 (44.85%), Query Frame = 1 
Query:  196 YVETETTSPAGAXXXXXXXSSEATFKTYVTEILEGRDEQCVYQSLEMADPW----NQKDSCHLMAHSACKGKP----VDEDPSNRLACSTQLHRGLDGTSDRYPPWIRIKVKNVENEPVPCFGKNGREHFRFRVNLLIDFHKDEQKLHHGICWKEG--TKDDGEAPVETFVHVVNYDVFEKGVEWKFRDTTEIW 747
            YV  +T SP           S  TF +  T I++   ++  YQ +E ++ W     +  SCH+M+   C+  P     D DPSNRLA S ++H   D  S   P  ++I V++     V   G       R++V+L++            +  KEG    DDG   + T ++V N  VF   +EWK ++  + W
Sbjct:   59 YVPDDTESPQ---------VSMTTFSSN-TSIVDVATDEFKYQRIE-SEEWFGSVGKAQSCHVMSREHCRKYPSYKKYDNDPSNRLALSAEMHEWFDARSYAVPT-MKISVESTSEGFV--IGN------RYKVDLVVRAWNAGFARLLSLRLKEGFAVSDDG-LEMRTSIYVQNKKVFCDCMEWKRKEIEKKW 231
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
B5LWM7_9PHYC1.120e-8151.43Uncharacterized protein n=1 Tax=Feldmannia species... [more]
G4YMK9_PHYSP1.480e-730.91Crinkler domain-containing protein n=1 Tax=Phytoph... [more]
A0A329RTD1_9STRA2.300e-629.94Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
G5AGM6_PHYSP2.260e-528.35Uncharacterized protein n=3 Tax=Phytophthora sojae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:797863..798880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.1
Seed ortholog evalue1.3e-09
Seed eggNOG ortholog109871.XP_006681466.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2EHZ0@1,2SNHF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1018
Cds size603
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15926.1prot_C-linearis_contig80.15926.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 798022..798624 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930597.8173633-UTR-C-linearis_contig80:797862..7980211622930597.8173633-UTR-C-linearis_contig80:797862..798021Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 797863..798021 +
1690881152.3705218-UTR-C-linearis_contig80:797862..7980211690881152.3705218-UTR-C-linearis_contig80:797862..798021Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 797863..798021 +
1622930597.857765-UTR-C-linearis_contig80:798624..7988801622930597.857765-UTR-C-linearis_contig80:798624..798880Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 798625..798880 +
1690881152.3913183-UTR-C-linearis_contig80:798624..7988801690881152.3913183-UTR-C-linearis_contig80:798624..798880Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 798625..798880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930597.839404-CDS-C-linearis_contig80:798021..7986241622930597.839404-CDS-C-linearis_contig80:798021..798624Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 798022..798624 +
1690881152.3813686-CDS-C-linearis_contig80:798021..7986241690881152.3813686-CDS-C-linearis_contig80:798021..798624Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 798022..798624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15926.1

>prot_C-linearis_contig80.15926.1 ID=prot_C-linearis_contig80.15926.1|Name=mRNA_C-linearis_contig80.15926.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=201bp
MVCLGKYIAVADYVETETTSPAGAQARARSRSSEATFKTYVTEILEGRDE
QCVYQSLEMADPWNQKDSCHLMAHSACKGKPVDEDPSNRLACSTQLHRGL
DGTSDRYPPWIRIKVKNVENEPVPCFGKNGREHFRFRVNLLIDFHKDEQK
LHHGICWKEGTKDDGEAPVETFVHVVNYDVFEKGVEWKFRDTTEIWESLK
*
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mRNA from alignment at C-linearis_contig80:797863..798880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15926.1 ID=mRNA_C-linearis_contig80.15926.1|Name=mRNA_C-linearis_contig80.15926.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1018bp|location=Sequence derived from alignment at C-linearis_contig80:797863..798880+ (Chordaria linearis ClinC8C monoicous)
ACCGATAGCATCAAAAGTGCAATCTCGAGCCAGGATGGCGGCCTCTTGAT
CAAACTCGGCTTCCAGGATGACGTCGCCACTGGACATTTCATTGGGAAAG
TAAGGACTTGGTGCGAGTTCCACGAGTTGACCTTGCGTGTATCCGACCGT
GCTGAGACGATGGTTTGTCTGGGGAAATATATCGCCGTGGCGGACTACGT
GGAAACCGAGACAACCTCACCCGCCGGTGCACAAGCCCGCGCCAGGAGCA
GGAGCAGCGAGGCAACGTTCAAGACTTACGTGACGGAAATACTCGAAGGC
AGGGACGAGCAGTGTGTGTATCAGTCGTTGGAGATGGCAGATCCGTGGAA
TCAGAAGGACAGTTGTCACTTGATGGCGCATTCTGCGTGCAAAGGAAAGC
CAGTTGACGAAGACCCCAGTAACAGACTGGCCTGTTCTACGCAATTACAC
AGAGGTTTAGACGGTACGTCGGACAGATATCCTCCTTGGATAAGAATTAA
GGTCAAGAATGTTGAGAACGAACCCGTACCCTGCTTCGGTAAGAATGGCA
GAGAGCACTTCAGGTTTCGTGTGAATCTGTTGATCGACTTCCACAAGGAC
GAGCAGAAGCTCCACCATGGTATTTGTTGGAAAGAGGGGACGAAGGATGA
TGGAGAAGCTCCGGTCGAGACGTTTGTCCACGTGGTCAACTACGACGTTT
TTGAAAAGGGGGTGGAATGGAAGTTTAGGGACACGACCGAGATCTGGGAA
AGCCTCAAATAAAGTTCTCTTGGAACTGGCAGTTGGGCAGCTGGAAGGAA
CATGAATGATTCAGCTTTTGTTATTTTCGGTGTATGCGTGCGTTGTGTTT
AGTCAGGGAATGAAAGTTGTAAGGGTATGGGTTACAGATGTGCCACATCA
AGGACAAAGGTTTCTAGGGGCGGCAGGAAAAAGGAGCCGCGGCCTACATA
CAAAATTAATATTGTTTCTCTGATTTAGAGTTCATGATATACTTGAGGAA
CCACCTGCATAGACTCTT
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Coding sequence (CDS) from alignment at C-linearis_contig80:797863..798880+

>mRNA_C-linearis_contig80.15926.1 ID=mRNA_C-linearis_contig80.15926.1|Name=mRNA_C-linearis_contig80.15926.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1206bp|location=Sequence derived from alignment at C-linearis_contig80:797863..798880+ (Chordaria linearis ClinC8C monoicous)
ATGGTTTGTCTGGGGAAATATATCGCCGTGGCGGACTACGTGGAAACCGA
GACAACCTCACCCGCCGGTGCACAAGCCCGCGCCAGGAGCAGGAGCAGCG
AGGCAACGTTCAAGACTTACGTGACGGAAATACTCGAAGGCAGGGACGAG
CAGTGTGTGTATCAGTCGTTGGAGATGGCAGATCCGTGGAATCAGAAGGA
CAGTTGTCACTTGATGGCGCATTCTGCGTGCAAAGGAAAGCCAGTTGACG
AAGACCCCAGTAACAGACTGGCCTGTTCTACGCAATTACACAGAGGTTTA
GACGGTACGTCGGACAGATATCCTCCTTGGATAAGAATTAAGGTCAAGAA
TGTTGAGAACGAACCCGTACCCTGCTTCGGTAAGAATGGCAGAGAGCACT
TCAGGTTTCGTGTGAATCTGTTGATCGACTTCCACAAGGACGAGCAGAAG
CTCCACCATGGTATTTGTTGGAAAGAGGGGACGAAGGATGATGGAGAAGC
TCCGGTCGAGACGTTTGTCCACGTGGTCAACTACGACGTTTTTGAAAAGG
GGGTGGAATGGAAGTTTAGGGACACGACCGAGATCTGGGAAAGCCTCAAA
TAAATGGTTTGTCTGGGGAAATATATCGCCGTGGCGGACTACGTGGAAAC
CGAGACAACCTCACCCGCCGGTGCACAAGCCCGCGCCAGGAGCAGGAGCA
GCGAGGCAACGTTCAAGACTTACGTGACGGAAATACTCGAAGGCAGGGAC
GAGCAGTGTGTGTATCAGTCGTTGGAGATGGCAGATCCGTGGAATCAGAA
GGACAGTTGTCACTTGATGGCGCATTCTGCGTGCAAAGGAAAGCCAGTTG
ACGAAGACCCCAGTAACAGACTGGCCTGTTCTACGCAATTACACAGAGGT
TTAGACGGTACGTCGGACAGATATCCTCCTTGGATAAGAATTAAGGTCAA
GAATGTTGAGAACGAACCCGTACCCTGCTTCGGTAAGAATGGCAGAGAGC
ACTTCAGGTTTCGTGTGAATCTGTTGATCGACTTCCACAAGGACGAGCAG
AAGCTCCACCATGGTATTTGTTGGAAAGAGGGGACGAAGGATGATGGAGA
AGCTCCGGTCGAGACGTTTGTCCACGTGGTCAACTACGACGTTTTTGAAA
AGGGGGTGGAATGGAAGTTTAGGGACACGACCGAGATCTGGGAAAGCCTC
AAATAA
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