mRNA_C-linearis_contig80.15925.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15925.1
Unique NamemRNA_C-linearis_contig80.15925.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: A0A6H5JVJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVJ6_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 2.200e-112
Identity = 171/212 (80.66%), Postives = 175/212 (82.55%), Query Frame = 1
Query:    1 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP*CCTTATG-------TSRP*LHFEECHW*VSSYHLLLEEGFVDGT 615
            KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPC+EIFAAVSGELTDDMKE+VQSLRANIVSTCGDQF FK GEE A FDDIVHDPMW+IVTRAMWEL TLHPTG LDGRAVWLLAKFLGLHGF IVKHEDGHLVPCDAGGPISSEEC        G         R  L FE        Y LLL+EGFVDG 
Sbjct:   15 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGELTDDMKEHVQSLRANIVSTCGDQFTFKDGEELASFDDIVHDPMWLIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECSMMLHDGYGHFKALIPLRRMPLEFEM----DEEYRLLLDEGFVDGA 222          
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D8LK60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK60_ECTSI)

HSP 1 Score: 333 bits (853), Expect = 5.940e-108
Identity = 173/212 (81.60%), Postives = 176/212 (83.02%), Query Frame = 1
Query:    1 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP*CCTTATG-------TSRP*LHFEECHW*VSSYHLLLEEGFVDGT 615
            KNVPA PKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPC+EIFAAVSG+LTDDMKEYVQSLRA  VSTCGDQFAFK GEE A FDDIVHDPMWVIVTRAMWEL TLHPTG LDGRAVWLLAKFLGLHGF IVKHEDGHLVPCDAGGPISSEECP       G         R  L FE        YHLLL+EGFVDGT
Sbjct:   15 KNVPAPPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGKLTDDMKEYVQSLRA--VSTCGDQFAFKDGEELASFDDIVHDPMWVIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLEFEM----EEGYHLLLDEGFVDGT 220          
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D7FR94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR94_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 1.340e-104
Identity = 151/167 (90.42%), Postives = 153/167 (91.62%), Query Frame = 1
Query:    1 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP 501
            KNVPATPKL DNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMD  GTPC+EIF A+SGELTD M EYVQSLRANIVSTCGDQFAFK GEE A FDDIVHDPMWVI TRAMWEL TLHPTG LDGRAVWLLAKFLGLHGF IVKHEDGHLV CDAGGPISSEECP
Sbjct:    2 KNVPATPKLCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAISGELTDVMTEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISSEECP 168          
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D7FVQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ8_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 7.200e-103
Identity = 164/205 (80.00%), Postives = 169/205 (82.44%), Query Frame = 1
Query:    1 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP*CCTTATGTSRP*LHFEECHW*VSSYHLLLEEGFVDGT 615
            KNVPATPKL DNSRVYFTT+GAQYMALDVGGGGLCALLGVIAVAMD  GTPC+EIF AVSGELTD M EYVQSLRANIVSTCGDQFAFK GEE A FDDIVHDPMWVI TRAMWEL TLHPTG LDGRAVWLLAKFLGLHGF IVKHEDGHLV CDAGGPISSEECP       G  +  +        +  YHLLLEE FVDGT
Sbjct:    2 KNVPATPKLCDNSRVYFTTKGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDVMTEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISSEECPTMLHDGYGHFKALIPLRR----MPEYHLLLEESFVDGT 202          
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D7FGY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY2_ECTSI)

HSP 1 Score: 315 bits (806), Expect = 7.130e-101
Identity = 165/212 (77.83%), Postives = 168/212 (79.25%), Query Frame = 1
Query:    1 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP*CCTTATG-------TSRP*LHFEECHW*VSSYHLLLEEGFVDGT 615
            KNVPATPKL DNSRVYFTT+GAQYMALDVGG GLCALLGVIAVAMD  GTPC+EIF AVSGELTD M EYVQSLRANIVSTCGDQFAFK GEE A FDDIVHDPMWVI TRAMWEL TLHPTG LDGRAVWLLAKFLGLHGF IVKHEDGHLV CDAGGPISSEECP       G         R  L F+        YHLLLEE FVD T
Sbjct:   15 KNVPATPKLCDNSRVYFTTKGAQYMALDVGGVGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDVMTEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLEFQI----NQEYHLLLEESFVDVT 222          
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D8LH64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH64_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 5.320e-75
Identity = 129/168 (76.79%), Postives = 132/168 (78.57%), Query Frame = 1
Query:  133 MDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP*CCTTATG-------TSRP*LHFEECHW*VSSYHLLLEEGFVDGT 615
            MDAAGTPC+EIF  VSGELTDDMKEYVQSLRANIVSTCGD FAFK GEE A FDDIVHDPMWVIVTRAMWEL TLHPTG LDGRAVWLLAKFLGLHGF IVKHEDGHLVPCDAGGPISS+ECP       G         R  L FE        YHLLL+EGFVDGT
Sbjct:    1 MDAAGTPCEEIFVGVSGELTDDMKEYVQSLRANIVSTCGDHFAFKDGEELASFDDIVHDPMWVIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSQECPMMLHDGYGHFKALIPLRRMPLEFEM----EEEYHLLLDEGFVDGT 164          
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D8LPN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN8_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 8.630e-38
Identity = 78/173 (45.09%), Postives = 98/173 (56.65%), Query Frame = 1
Query:   40 RVYFTTEGAQYMALDVGGGGLCA-LLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP*CCTTATGTSRP*LHFEE 555
            RV  T EG +Y  +DV G   C  +L  IA+ M     P ++I ++VSG LTDDM +YV +LR  +V      F+F  GEE A FDD+V +PMWVI+ R MWE   L   G  DGRA  L+ K L L G  IVKH++G L PCD G P+ S  CP       G  +  LHF E
Sbjct:    3 RVMSTPEGVKYRVVDVAGRDRCCEILAPIALNMFRENIPLEDIVSSVSGNLTDDMMKYVPTLRGKVVEMSRVFFSFADGEELADFDDVVDNPMWVIMARGMWEKVMLCFRGQFDGRAFLLMGKVLPLDGIRIVKHDNGILAPCDVGVPLPSGHCPMVLHDGYGHFKALLHFRE 175          
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D7FZH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH0_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.450e-28
Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = 1
Query:   31 DNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFA-FKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHE-DGHLVPCDAGG 477
            +  RVY T +GA Y +LDV GGG+CA+L +IA+ M + G P   +FAAV GE+T +M+ YVQ LR  IV     +      GEE A FDD+V +P   I T+ MW +  L   G LD  A+ LLA++ GL+GF +V+ + DG LVPCD  G
Sbjct:   33 EEGRVYHTPDGATYRSLDVAGGGMCAVLTLIALYMISNGDPYSFVFAAVCGEVTSEMRGYVQCLRGIIVHMSEGRITHLGDGEESAPFDDVVENPDHEIETKGMWRMVMLAARGFLDTLAMDLLAEYFGLNGFRVVRPDGDGLLVPCDYKG 183          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JVJ6_9PHAE2.200e-11280.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK60_ECTSI5.940e-10881.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FR94_ECTSI1.340e-10490.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FVQ8_ECTSI7.200e-10380.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FGY2_ECTSI7.130e-10177.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LH64_ECTSI5.320e-7576.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPN8_ECTSI8.630e-3845.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZH0_ECTSI3.450e-2846.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:790828..791599 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_002310.1
Exons2
Model size617
Cds size432
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15925.1prot_C-linearis_contig80.15925.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 791096..791527 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930597.710107-UTR-C-linearis_contig80:790827..7908681622930597.710107-UTR-C-linearis_contig80:790827..790868Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 790828..790868 -
1690881152.3117561-UTR-C-linearis_contig80:790827..7908681690881152.3117561-UTR-C-linearis_contig80:790827..790868Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 790828..790868 -
1622930597.7251058-UTR-C-linearis_contig80:791023..7910951622930597.7251058-UTR-C-linearis_contig80:791023..791095Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 791024..791095 -
1690881152.3307097-UTR-C-linearis_contig80:791023..7910951690881152.3307097-UTR-C-linearis_contig80:791023..791095Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 791024..791095 -
1622930597.7681057-UTR-C-linearis_contig80:791527..7915991622930597.7681057-UTR-C-linearis_contig80:791527..791599Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 791528..791599 -
1690881152.3589573-UTR-C-linearis_contig80:791527..7915991690881152.3589573-UTR-C-linearis_contig80:791527..791599Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 791528..791599 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930597.7476842-CDS-C-linearis_contig80:791095..7915271622930597.7476842-CDS-C-linearis_contig80:791095..791527Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 791096..791527 -
1690881152.3492117-CDS-C-linearis_contig80:791095..7915271690881152.3492117-CDS-C-linearis_contig80:791095..791527Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 791096..791527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15925.1

>prot_C-linearis_contig80.15925.1 ID=prot_C-linearis_contig80.15925.1|Name=mRNA_C-linearis_contig80.15925.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=144bp
MALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSL
RANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGN
LDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP*
back to top

mRNA from alignment at C-linearis_contig80:790828..791599-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15925.1 ID=mRNA_C-linearis_contig80.15925.1|Name=mRNA_C-linearis_contig80.15925.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=772bp|location=Sequence derived from alignment at C-linearis_contig80:790828..791599- (Chordaria linearis ClinC8C monoicous)
AAGAACGTCCCTGCGACCCCGAAGCTTCGCGACAACAGCCGCGTGTACTT CACGACTGAGGGGGCGCAGTACATGGCGCTGGACGTCGGTGGCGGCGGTC TGTGTGCTCTTCTCGGCGTCATCGCTGTGGCGATGGACGCCGCAGGAACC CCTTGTAAGGAGATTTTCGCAGCCGTCAGCGGCGAGCTCACGGACGACAT GAAGGAGTACGTCCAGTCCCTCCGCGCCAACATCGTCAGCACGTGCGGCG ACCAGTTCGCCTTCAAGACCGGTGAAGAGCGGGCTATCTTCGACGACATC GTCCACGACCCGATGTGGGTGATTGTGACGAGGGCGATGTGGGAGCTGGC GACACTTCATCCAACTGGAAATCTCGACGGAAGGGCGGTGTGGCTGTTGG CGAAGTTCCTCGGGTTGCACGGATTTAGTATAGTCAAGCACGAAGACGGC CACTTGGTCCCATGTGATGCCGGGGGCCCCATCTCCTCCGAAGAGTGCCC ATGATGCTGCACGACGGCTACGGGCACTTCAAGGCCCTGATTGCACTTCG AAGAATGCCACTGGTAAGTCTCGTCTGTTTTTAATTGTATGTGTGCGCGC GTACATGATATGATCCGTGATAATTTTGCTTTGAATTTAAAAACATATTT GAAGCTCACACCGCTCACGTCTGGCCAACGCATTGTTTTGTTTTGCCCCC CCCCCTCCAGGAGTTCGAGATGGATGAAGAGTACCATTTGCTCCTCGAAG AGGGTTTCGTGGACGGCACCGA
back to top

Coding sequence (CDS) from alignment at C-linearis_contig80:790828..791599-

>mRNA_C-linearis_contig80.15925.1 ID=mRNA_C-linearis_contig80.15925.1|Name=mRNA_C-linearis_contig80.15925.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at C-linearis_contig80:790828..791599- (Chordaria linearis ClinC8C monoicous)
ATGGCGCTGGACGTCGGTGGCGGCGGTCTGTGTGCTCTTCTCGGCGTCAT
CGCTGTGGCGATGGACGCCGCAGGAACCCCTTGTAAGGAGATTTTCGCAG
CCGTCAGCGGCGAGCTCACGGACGACATGAAGGAGTACGTCCAGTCCCTC
CGCGCCAACATCGTCAGCACGTGCGGCGACCAGTTCGCCTTCAAGACCGG
TGAAGAGCGGGCTATCTTCGACGACATCGTCCACGACCCGATGTGGGTGA
TTGTGACGAGGGCGATGTGGGAGCTGGCGACACTTCATCCAACTGGAAAT
CTCGACGGAAGGGCGGTGTGGCTGTTGGCGAAGTTCCTCGGGTTGCACGG
ATTTAGTATAGTCAAGCACGAAGACGGCCACTTGGTCCCATGTGATGCCG
GGGGCCCCATCTCCTCCGAAGAGTGCCCATGAATGGCGCTGGACGTCGGT
GGCGGCGGTCTGTGTGCTCTTCTCGGCGTCATCGCTGTGGCGATGGACGC
CGCAGGAACCCCTTGTAAGGAGATTTTCGCAGCCGTCAGCGGCGAGCTCA
CGGACGACATGAAGGAGTACGTCCAGTCCCTCCGCGCCAACATCGTCAGC
ACGTGCGGCGACCAGTTCGCCTTCAAGACCGGTGAAGAGCGGGCTATCTT
CGACGACATCGTCCACGACCCGATGTGGGTGATTGTGACGAGGGCGATGT
GGGAGCTGGCGACACTTCATCCAACTGGAAATCTCGACGGAAGGGCGGTG
TGGCTGTTGGCGAAGTTCCTCGGGTTGCACGGATTTAGTATAGTCAAGCA
CGAAGACGGCCACTTGGTCCCATGTGATGCCGGGGGCCCCATCTCCTCCG
AAGAGTGCCCATGA
back to top