mRNA_C-linearis_contig80.15925.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: A0A6H5JVJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVJ6_9PHAE) HSP 1 Score: 332 bits (852), Expect = 2.200e-112 Identity = 171/212 (80.66%), Postives = 175/212 (82.55%), Query Frame = 1
Query: 1 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP*CCTTATG-------TSRP*LHFEECHW*VSSYHLLLEEGFVDGT 615
KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPC+EIFAAVSGELTDDMKE+VQSLRANIVSTCGDQF FK GEE A FDDIVHDPMW+IVTRAMWEL TLHPTG LDGRAVWLLAKFLGLHGF IVKHEDGHLVPCDAGGPISSEEC G R L FE Y LLL+EGFVDG
Sbjct: 15 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGELTDDMKEHVQSLRANIVSTCGDQFTFKDGEELASFDDIVHDPMWLIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECSMMLHDGYGHFKALIPLRRMPLEFEM----DEEYRLLLDEGFVDGA 222
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D8LK60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK60_ECTSI) HSP 1 Score: 333 bits (853), Expect = 5.940e-108 Identity = 173/212 (81.60%), Postives = 176/212 (83.02%), Query Frame = 1
Query: 1 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP*CCTTATG-------TSRP*LHFEECHW*VSSYHLLLEEGFVDGT 615
KNVPA PKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPC+EIFAAVSG+LTDDMKEYVQSLRA VSTCGDQFAFK GEE A FDDIVHDPMWVIVTRAMWEL TLHPTG LDGRAVWLLAKFLGLHGF IVKHEDGHLVPCDAGGPISSEECP G R L FE YHLLL+EGFVDGT
Sbjct: 15 KNVPAPPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCEEIFAAVSGKLTDDMKEYVQSLRA--VSTCGDQFAFKDGEELASFDDIVHDPMWVIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLEFEM----EEGYHLLLDEGFVDGT 220
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D7FR94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR94_ECTSI) HSP 1 Score: 308 bits (790), Expect = 1.340e-104 Identity = 151/167 (90.42%), Postives = 153/167 (91.62%), Query Frame = 1
Query: 1 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP 501
KNVPATPKL DNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMD GTPC+EIF A+SGELTD M EYVQSLRANIVSTCGDQFAFK GEE A FDDIVHDPMWVI TRAMWEL TLHPTG LDGRAVWLLAKFLGLHGF IVKHEDGHLV CDAGGPISSEECP
Sbjct: 2 KNVPATPKLCDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAISGELTDVMTEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISSEECP 168
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D7FVQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVQ8_ECTSI) HSP 1 Score: 325 bits (832), Expect = 7.200e-103 Identity = 164/205 (80.00%), Postives = 169/205 (82.44%), Query Frame = 1
Query: 1 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP*CCTTATGTSRP*LHFEECHW*VSSYHLLLEEGFVDGT 615
KNVPATPKL DNSRVYFTT+GAQYMALDVGGGGLCALLGVIAVAMD GTPC+EIF AVSGELTD M EYVQSLRANIVSTCGDQFAFK GEE A FDDIVHDPMWVI TRAMWEL TLHPTG LDGRAVWLLAKFLGLHGF IVKHEDGHLV CDAGGPISSEECP G + + + YHLLLEE FVDGT
Sbjct: 2 KNVPATPKLCDNSRVYFTTKGAQYMALDVGGGGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDVMTEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISSEECPTMLHDGYGHFKALIPLRR----MPEYHLLLEESFVDGT 202
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D7FGY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY2_ECTSI) HSP 1 Score: 315 bits (806), Expect = 7.130e-101 Identity = 165/212 (77.83%), Postives = 168/212 (79.25%), Query Frame = 1
Query: 1 KNVPATPKLRDNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP*CCTTATG-------TSRP*LHFEECHW*VSSYHLLLEEGFVDGT 615
KNVPATPKL DNSRVYFTT+GAQYMALDVGG GLCALLGVIAVAMD GTPC+EIF AVSGELTD M EYVQSLRANIVSTCGDQFAFK GEE A FDDIVHDPMWVI TRAMWEL TLHPTG LDGRAVWLLAKFLGLHGF IVKHEDGHLV CDAGGPISSEECP G R L F+ YHLLLEE FVD T
Sbjct: 15 KNVPATPKLCDNSRVYFTTKGAQYMALDVGGVGLCALLGVIAVAMDDVGTPCEEIFEAVSGELTDVMTEYVQSLRANIVSTCGDQFAFKDGEELASFDDIVHDPMWVIATRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVSCDAGGPISSEECPMMLHDGYGHFKALIPLRRMPLEFQI----NQEYHLLLEESFVDVT 222
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D8LH64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH64_ECTSI) HSP 1 Score: 254 bits (650), Expect = 5.320e-75 Identity = 129/168 (76.79%), Postives = 132/168 (78.57%), Query Frame = 1
Query: 133 MDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP*CCTTATG-------TSRP*LHFEECHW*VSSYHLLLEEGFVDGT 615
MDAAGTPC+EIF VSGELTDDMKEYVQSLRANIVSTCGD FAFK GEE A FDDIVHDPMWVIVTRAMWEL TLHPTG LDGRAVWLLAKFLGLHGF IVKHEDGHLVPCDAGGPISS+ECP G R L FE YHLLL+EGFVDGT
Sbjct: 1 MDAAGTPCEEIFVGVSGELTDDMKEYVQSLRANIVSTCGDHFAFKDGEELASFDDIVHDPMWVIVTRAMWELVTLHPTGYLDGRAVWLLAKFLGLHGFRIVKHEDGHLVPCDAGGPISSQECPMMLHDGYGHFKALIPLRRMPLEFEM----EEEYHLLLDEGFVDGT 164
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D8LPN8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPN8_ECTSI) HSP 1 Score: 139 bits (350), Expect = 8.630e-38 Identity = 78/173 (45.09%), Postives = 98/173 (56.65%), Query Frame = 1
Query: 40 RVYFTTEGAQYMALDVGGGGLCA-LLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFAFKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHEDGHLVPCDAGGPISSEECP*CCTTATGTSRP*LHFEE 555
RV T EG +Y +DV G C +L IA+ M P ++I ++VSG LTDDM +YV +LR +V F+F GEE A FDD+V +PMWVI+ R MWE L G DGRA L+ K L L G IVKH++G L PCD G P+ S CP G + LHF E
Sbjct: 3 RVMSTPEGVKYRVVDVAGRDRCCEILAPIALNMFRENIPLEDIVSSVSGNLTDDMMKYVPTLRGKVVEMSRVFFSFADGEELADFDDVVDNPMWVIMARGMWEKVMLCFRGQFDGRAFLLMGKVLPLDGIRIVKHDNGILAPCDVGVPLPSGHCPMVLHDGYGHFKALLHFRE 175
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Match: D7FZH0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZH0_ECTSI) HSP 1 Score: 121 bits (303), Expect = 3.450e-28 Identity = 70/151 (46.36%), Postives = 94/151 (62.25%), Query Frame = 1
Query: 31 DNSRVYFTTEGAQYMALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLRANIVSTCGDQFA-FKTGEERAIFDDIVHDPMWVIVTRAMWELATLHPTGNLDGRAVWLLAKFLGLHGFSIVKHE-DGHLVPCDAGG 477
+ RVY T +GA Y +LDV GGG+CA+L +IA+ M + G P +FAAV GE+T +M+ YVQ LR IV + GEE A FDD+V +P I T+ MW + L G LD A+ LLA++ GL+GF +V+ + DG LVPCD G
Sbjct: 33 EEGRVYHTPDGATYRSLDVAGGGMCAVLTLIALYMISNGDPYSFVFAAVCGEVTSEMRGYVQCLRGIIVHMSEGRITHLGDGEESAPFDDVVENPDHEIETKGMWRMVMLAARGFLDTLAMDLLAEYFGLNGFRVVRPDGDGLLVPCDYKG 183 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig80.15925.1 >prot_C-linearis_contig80.15925.1 ID=prot_C-linearis_contig80.15925.1|Name=mRNA_C-linearis_contig80.15925.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=144bp MALDVGGGGLCALLGVIAVAMDAAGTPCKEIFAAVSGELTDDMKEYVQSLback to top mRNA from alignment at C-linearis_contig80:790828..791599- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig80.15925.1 ID=mRNA_C-linearis_contig80.15925.1|Name=mRNA_C-linearis_contig80.15925.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=772bp|location=Sequence derived from alignment at C-linearis_contig80:790828..791599- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig80:790828..791599- >mRNA_C-linearis_contig80.15925.1 ID=mRNA_C-linearis_contig80.15925.1|Name=mRNA_C-linearis_contig80.15925.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=864bp|location=Sequence derived from alignment at C-linearis_contig80:790828..791599- (Chordaria linearis ClinC8C monoicous)back to top |