mRNA_C-linearis_contig80.15924.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig80.15924.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE) HSP 1 Score: 296 bits (758), Expect = 8.580e-90 Identity = 153/293 (52.22%), Postives = 201/293 (68.60%), Query Frame = 1
Query: 1 WRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNEVLLAREGGVL-RLAKYGLSLPISTTTINVWMRKLGCKHDRVKQSYYSDGHERPDVQAAREVYLRLQRKLALRKPCWVRVEWSALTEEEQQGFDDQRETG-DGAFSAETFRFEMDGEEYVEFHVDFL-GAGSDEKYDALREGHGCEGGSYSIRFDIAAAAPCEYFHAPDVCRCHQPLYHIGQDESVYKAYAREGTEWVIRGVRGLRKKTEGAGEMVSAFQDEKRGFGLPLSADELATVN 870
W R FRK F RD RG E +WI++EEDL LL W+ +Q R T K K++N LL + L RL Y ++LP+S +T + WM +LGC+++R +S+Y+D HE+ +V R Y+ +RK+ALR+P WVRV+ +AL +EE D + G +G F AE + ++DG++ +EFHVD L GS + +D LR G EGG YS+RFD AAAA CEYFH + CRC + ++HIGQDES YKAYAREG EWVIRGVRGLRK+TEG GEMVS FQDE+ GFGLP+S +LA VN
Sbjct: 322 WLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRFTIKDVCKYINGPLLQDDKEDLSRLHAYQVNLPVSMSTTHSWMIRLGCRYERATKSFYTDTHEKKEVVEYRGEYIEKRRKMALRQPLWVRVQRAALKQEEVDRLDSLKSRGPEGDFYAEVYDCKIDGQDCIEFHVDLLRDDGSVDNFDKLRAALGPEGGDYSVRFDQAAAAQCEYFHPTNKCRCGKKVHHIGQDESAYKAYAREGKEWVIRGVRGLRKRTEGPGEMVSGFQDERHGFGLPISDADLAAVN 614
BLAST of mRNA_C-linearis_contig80.15924.1 vs. uniprot
Match: A0A6H5K7P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P7_9PHAE) HSP 1 Score: 287 bits (735), Expect = 3.170e-86 Identity = 152/311 (48.87%), Postives = 201/311 (64.63%), Query Frame = 1
Query: 1 WRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNEVLLARE-GGVLRLAKYGLSLPISTTTINVWMRKLGCKHDRVKQSYYSDGHERPDVQAAREVYLRLQRKLALRKPCWVRVEWSALTEEEQQGFDDQRETGDGAFSAETFRFEMDGEEYVEFHVDFL-GAGSDEKYDALREGHGCEGGSYSIRFDIAAAAPCEYFHAPDVCRCHQPLYHIGQDESVYKAYAREGTEWVIRG-------------------VRGLRKKTEGAGEMVSAFQDEKRGFGLPLSADELATVN 870
W R FR F RD RGV ER+WI++EED EL+ W++ QKR+T K ++N+ L A + G + RL Y ++LP+S T + WM LGCK++R +S+Y+DGHE+ DV R Y+ ++RKLAL +P WVRV+ LT +E Q D + + F AE + ++G E +EFHVD L GS +++D LR G EGG +S+RF+ AAA PCE+FH P C+C++ + HIGQDESVYKAYAREG EWV++G VRGLRKKTEG GEMVSAFQDE+ GFGLPL+ D L VN
Sbjct: 391 WLRDFRGHGGFKRDSRGVHERDWIMSEEDPKDELIKWMRTQKRLTVKDVQNYINQWLFANQIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALWQPLWVRVQRDTLTPKELQRLDGIKGPAED-FCAEVYDCVVEGRECIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALPCEHFHTPAKCKCNRKVRHIGQDESVYKAYAREGKEWVVQGXXXXXXXXXXXXXXXXXXXVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVN 700
BLAST of mRNA_C-linearis_contig80.15924.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE) HSP 1 Score: 282 bits (721), Expect = 1.180e-85 Identity = 148/291 (50.86%), Postives = 190/291 (65.29%), Query Frame = 1
Query: 1 WRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNEVLLAREGGVLRLAKYGLSLPISTTTINVWMRKLGCKHDRVKQSYYSDGHERPDVQAAREVYLRLQRKLALRKPCWVRVEWSALTEEEQQGFDDQRETGDGAFSAETFRFEMDGEEYVEFHVDFL-GAGSDEKYDALREGHGCEGGSYSIRFDIAAAAPCEYFHAPDVCRCHQPLYHIGQDESVYKAYAREGTEWVIRGVRGLRKKTEGAGEMVSAFQDEKRGFGLPLSADELATVN 870
W R FR F RD RGV ER+WI++EEDL EL+ W++ QKR+T K ++LP+S T + WM LGCK++R +S+Y+DGHE+ DV R Y+ ++RKLALR+P WVRV+ LT EE Q D + F AE + ++G E +EFHVD L GS +++D LR G EGG +S+RF+ AAA PCE+FH P C+C++ + HIGQDESVYKAYAREG EWV++GVRGLRKKTEG GEMVSAFQDE+ GFGLPL+ D L VN
Sbjct: 405 WLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRLTAKD-----------------------VNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAKD-FCAEVYDCVVEGRECIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALPCEHFHTPAKCKCNRKVRHIGQDESVYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVN 671
BLAST of mRNA_C-linearis_contig80.15924.1 vs. uniprot
Match: A0A6H5JUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI4_9PHAE) HSP 1 Score: 216 bits (551), Expect = 3.550e-61 Identity = 118/254 (46.46%), Postives = 157/254 (61.81%), Query Frame = 1
Query: 1 WRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNEVLLARE-GGVLRLAKYGLSLPISTTTINVWMRKLGCKHDRVKQSYYSDGHERPDVQAAREVYLRLQRKLALRKPCWVRVEWSALTEEEQQGFDDQRETGDGAFSAETFRFEMDGEEYVEFHVDFL-GAGSDEKYDALREGHGCEGGSYSIRFDIAAAAPCEYFHAPDVCRCHQPLYHIGQDESVYKAYAREGTEWVIRG 756
W R FR F RD RGV ER+WI++EEDL EL+ W++ QKR+T K ++N+ L A E G + RL Y ++LP+S T + W+ LGCK D V R Y+ ++RKLALR+P WVRV+ LT EE Q D + F AE + ++G E +EFHVD L GS +++D LR G EGG +S+RF+ AAA PCE+FH P C+C++ + HIGQDESVYKAYAREG EWV++G
Sbjct: 349 WLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWIIALGCKKD---------------VVVCRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAKD-FCAEVYDCVVEGRECIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALPCEHFHTPAKCKCNRKVRHIGQDESVYKAYAREGKEWVVQG 586
BLAST of mRNA_C-linearis_contig80.15924.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE) HSP 1 Score: 199 bits (506), Expect = 4.620e-55 Identity = 107/237 (45.15%), Postives = 150/237 (63.29%), Query Frame = 1
Query: 1 WRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNEVLLARE-GGVLRLAKYGLSLPISTTTINVWMRKLGCKHDRVKQSYYSDGHERPDVQAAREVYLRLQRKLALRKPCWVRVEWSALTEEEQQGFDDQRETGDGAFSAETFRFEMDGEEYVEFHVDFL-GAGSDEKYDALREGHGCEGGSYSIRFDIAAAAPCEYFHAPDVCRCHQPL---YHIG 696
W R FR RD RGV ER+WI++EEDL EL+ W++ QKR+T K ++N+ L A E G + RL Y ++LP+S T + WM LGCK++R +S+Y+DGHE+ DV R Y+ ++RKLALR+P WVRV+ LT EE Q D + F AE + ++G E +EFHVD L GS +++D LR G EGG +S+RF+ AAA PCE+FH P C+C++ +H+G
Sbjct: 276 WLRDFRGHGGSKRDSRGVHERDWIMSEEDLKDELVMWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSYQVNLPVSMATTHSWMIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAKD-FCAEVYDCVVEGRECIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALPCEHFHTPVKCKCNRKREDGWHMG 511
BLAST of mRNA_C-linearis_contig80.15924.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE) HSP 1 Score: 197 bits (500), Expect = 7.950e-55 Identity = 103/237 (43.46%), Postives = 150/237 (63.29%), Query Frame = 1
Query: 1 WRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHKFVNEVLLARE-GGVLRLAKYGLSLPISTTTINVWMRKLGCKHDRVKQSYYSDGHERPDVQAAREVYLRLQRKLALRKPCWVRVEWSALTEEEQQGFDDQRETGDGAFSAETFRFEMDGEEYVEFHVDFL-GAGSDEKYDALREGHGCEGGSYSIRFDIAAAAPCEYFHAPDVCRCHQPLYHIGQDE 705
W R FR F RD R V ER+WI+++EDL EL+ W++ QKR+T K ++N+ L A E G + RL + ++LP+S T + W+ LGCK++R +S+Y+DGHE+ DV R Y+ ++RKLALR+P WVRV+ LT EE Q D + + F AE + ++G E +EFHVD L GS +++D LR G EGG +S+RF+ AAA PCE+FH P C+C++ + + E
Sbjct: 234 WLRDFRGHGGFKRDSRRVHERDWIMSKEDLKDELIKWMRTQKRLTVKDVQNYINQWLFANEIGDLSRLLSHQVNLPVSMVTTHSWIIALGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAED-FCAEVYDCVVEGRECIEFHVDLLRDNGSVDRFDDLRAELGPEGGHFSVRFEEAAALPCEHFHTPAKCKCNRKAVNARRKE 469
BLAST of mRNA_C-linearis_contig80.15924.1 vs. uniprot
Match: A0A6H5J4M4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J4M4_9PHAE) HSP 1 Score: 172 bits (436), Expect = 8.880e-45 Identity = 84/133 (63.16%), Postives = 102/133 (76.69%), Query Frame = 1
Query: 475 AETFRFEMDGEEYVEFHVDFL-GAGSDEKYDALREGHGCEGGSYSIRFDIAAAAPCEYFHAPDVCRCHQPLYHIGQDESVYKAYAREGTEWVIRGVRGLRKKTEGAGEMVSAFQDEKRGFGLPLSADELATVN 870
AE + ++G E +EFHVD L GS +++DA R G EGG YS+RF+ AAA PCE+FH P C+C++ + HIGQDESVYKAYAREG EWV++GVRGLRKKTEG GEMVSAFQDE+ GFGLPL+ D L VN
Sbjct: 506 AEVYDCVVEGRECIEFHVDLLRDIGSVDRFDARRAKLGPEGGHYSVRFEEAAALPCEHFHTPAKCKCNRKVRHIGQDESVYKAYAREGKEWVVQGVRGLRKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVN 638
BLAST of mRNA_C-linearis_contig80.15924.1 vs. uniprot
Match: A0A6H5L5X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X3_9PHAE) HSP 1 Score: 162 bits (411), Expect = 1.190e-41 Identity = 96/220 (43.64%), Postives = 126/220 (57.27%), Query Frame = 1
Query: 214 LSLPISTTTINVWMRKLGCKHDRVKQSYYSDGHERPDVQAAREVYLRLQRKLALRKPCWVRVEWSALTEEEQQGFDDQRETGDGAFSAETFRFEMDGEEYVEFHVDFLGAG-SDEKYDALREGHGCEGGSYSIRFDIAAAAPCEYFHAPDVCRCHQPLYHIGQDESVYKAYAREGTEWVIRGVRGLRKKTEGAGEMVSAFQDEKRGFGLPLSADELATVN 870
++LP+S T + WM GCK++R +S+Y+DGHE+ DV R Y+ ++RKLALR+P WVRV+ LT EE Q D + + F AE + ++G E +EFHVD + S +++DALR G EGG +S AYAREG EWV++GVRGLRKKTEG GEMV AFQDE+ GFGLPL+ D L VN
Sbjct: 289 VNLPVSMATTHSWMIVPGCKYERATKSFYTDGHEKKDVVVYRGKYIDVKRKLALRQPLWVRVQRDTLTPEELQRLDGIKGPAE-EFGAEVYDCVVEGRESIEFHVDLVRDNDSVDRFDALRAELGPEGGHFS-------------------------------------AYAREGKEWVVQGVRGLRKKTEGPGEMVPAFQDERHGFGLPLTDDVLQAVN 470
BLAST of mRNA_C-linearis_contig80.15924.1 vs. uniprot
Match: A0A6H5KXL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXL0_9PHAE) HSP 1 Score: 154 bits (390), Expect = 3.680e-39 Identity = 71/96 (73.96%), Postives = 80/96 (83.33%), Query Frame = 1
Query: 583 GCEGGSYSIRFDIAAAAPCEYFHAPDVCRCHQPLYHIGQDESVYKAYAREGTEWVIRGVRGLRKKTEGAGEMVSAFQDEKRGFGLPLSADELATVN 870
G EGG YS+RFD AAAA CE+FH P+ CRC + ++HIGQDES YKAYAREG EWVIRGVRGLRKKTEG GEMVS FQDE+ GFGLP+S +LA VN
Sbjct: 234 GPEGGDYSVRFDQAAAAQCEHFHPPNKCRCGKKVHHIGQDESAYKAYAREGKEWVIRGVRGLRKKTEGPGEMVSGFQDERHGFGLPISDADLAAVN 329
BLAST of mRNA_C-linearis_contig80.15924.1 vs. uniprot
Match: A0A6H5JVN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN6_9PHAE) HSP 1 Score: 150 bits (379), Expect = 3.260e-37 Identity = 72/109 (66.06%), Postives = 86/109 (78.90%), Query Frame = 1
Query: 544 GSDEKYDALREGHGCEGGSYSIRFDIAAAAPCEYFHAPDVCRCHQPLYHIGQDESVYKAYAREGTEWVIRGVRGLRKKTEGAGEMVSAFQDEKRGFGLPLSADELATVN 870
GS +++DALR G EGG YS+RF+ AAA PCE+FH P C+ ++ + HIGQDESVYKAYAREG EWV++GV GL KKTEG GEMVSAFQDE+ GFGLPL+ D L VN
Sbjct: 457 GSVDRFDALRAELGPEGGHYSVRFEEAAALPCEHFHTPAKCKGNKEVRHIGQDESVYKAYAREGKEWVVQGVPGLWKKTEGPGEMVSAFQDERHGFGLPLTDDVLQAVN 565 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig80.15924.1 >prot_C-linearis_contig80.15924.1 ID=prot_C-linearis_contig80.15924.1|Name=mRNA_C-linearis_contig80.15924.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=290bp WRRQFRKLDAFLRDGRGVREREWILNEEDLSMELLNWLKAQKRVTTKSTHback to top mRNA from alignment at C-linearis_contig80:761807..762676- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig80.15924.1 ID=mRNA_C-linearis_contig80.15924.1|Name=mRNA_C-linearis_contig80.15924.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=870bp|location=Sequence derived from alignment at C-linearis_contig80:761807..762676- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig80:761807..762676- >mRNA_C-linearis_contig80.15924.1 ID=mRNA_C-linearis_contig80.15924.1|Name=mRNA_C-linearis_contig80.15924.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1740bp|location=Sequence derived from alignment at C-linearis_contig80:761807..762676- (Chordaria linearis ClinC8C monoicous)back to top |