mRNA_C-linearis_contig80.15912.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig80.15912.1 vs. uniprot
Match: A0A6H5KLN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLN8_9PHAE) HSP 1 Score: 936 bits (2419), Expect = 0.000e+0 Identity = 494/658 (75.08%), Postives = 539/658 (81.91%), Query Frame = 1
Query: 133 MSLRQQGEAEVADQARA-RVHRRSESEAASGALGIPRPLSSTTYDSPRWRGGGGSKQR-----YGWKTNDSSNTSPEGDGNA-LVSLADLIRNEDKVPATLLYEHTGDTDVAMDARDIGAGGLPHQAMNGGAVGMQEALQAAEHGNSIRLSKFLQDGGSPDTLSRLHHLRWSLLHLAAGCSSMGGRLAFASHRRRPEPDCNDGYATCVSELLAAGADPNVTSSSLGYTPLMSAAFTGSKECCWLLLRAGARLDMRADDGRTAFDFAQKARHLGGGNSGGASDSVLAVLRDPPKKIPRSPTLVMATLSERSRLEPEEEVPSVEVRWRVPSQASLAPTVCGDVERSYVKVWCRGKGKEVIRTKTSTVNVPRRDFCRNQIIDRGIALRKNLCLPQSQTTSAVIHGLQAGDIYSFTVSCVAELEGALRHSPPSCMSKPLLIPESKEDYQWRLGGLLQRVNGKEMPSPGAAGEGVAQTQARRGADSSPTIIDQGRQFQQPSKNFSVSWAKDDMAPAIDVRQPAGYGDRVDANASPPDDFGRSLPSSAREWQTTHASHGTPARRRSQSYASSVTRPDLFLQMSPAEQSFRSSLGGLGYSPPSTSPPLEEGTEPKPSFPNTTPNASPGGRAEGELGRGGALTNRSTR--GLYESESFQDEGCSIS 2079
MSL QGE EVA + R HRRSESEA+ G PRP SST+YDSPRWRGGG +KQR YGW+ ND +N SP D N LVSLADLIR EDKVPATLLYEH GDTD MDARDI AGGL HQAMNGGAVGMQEALQAAEHGNS+RLSKFLQDGG+PDTLSRLHHLRWSLLHLAAGCSSMGGRLAFASHRRRPEPDCNDGY TCVSELLAAGADPN+TSSSLGYTPLMSAA TGSKECCWLLLRAGARLDMRADDGRTAFDFAQKARHLGGG+SGG DSVL VLR+PPKKIPRSPT+V+ATL+ERS LEPEEEVP VEVRWRVPSQASLAPT+CGDVER Y+K WCRGKGKEVIRTKTST +VPRRDFCRNQIIDRGIALRKNLCLPQSQTTSA++HGL+AG +YSFTVSCVAE+EGALRHSPPSCMSKPLLIPESKED+QWRLGG+LQ V GK+ PS G GEG A Q RR + SPT IDQ R P+K+FSVSWAKDD+AP ID RQPA Y D SP DFGRSL S+A EW+ HAS P RRRSQSYASS TR D FLQ S A+++ R+S+ + PPSTS LEEGTE +P F + TP+A GRA+GE+G GG ST G SE ++D GCS+S
Sbjct: 1 MSLNHQGEPEVAGRKTGNRAHRRSESEASGAFGGGPRPFSSTSYDSPRWRGGGANKQRGSGGRYGWRANDGNNASPADDENPRLVSLADLIRKEDKVPATLLYEHPGDTDAPMDARDIEAGGLTHQAMNGGAVGMQEALQAAEHGNSVRLSKFLQDGGNPDTLSRLHHLRWSLLHLAAGCSSMGGRLAFASHRRRPEPDCNDGYVTCVSELLAAGADPNITSSSLGYTPLMSAALTGSKECCWLLLRAGARLDMRADDGRTAFDFAQKARHLGGGSSGGIHDSVLDVLREPPKKIPRSPTMVIATLAERSSLEPEEEVPPVEVRWRVPSQASLAPTLCGDVERFYLKTWCRGKGKEVIRTKTSTADVPRRDFCRNQIIDRGIALRKNLCLPQSQTTSAIVHGLRAGGVYSFTVSCVAEVEGALRHSPPSCMSKPLLIPESKEDHQWRLGGMLQMVTGKDTPSSGTTGEGGAAPQVRRVTNQSPTSIDQRRG---PAKSFSVSWAKDDIAPTIDQRQPASYRVSDDVIVSPSGDFGRSLTSNASEWEPKHASPVVPLRRRSQSYASSATRADTFLQTSTADETIRASMA---FPPPSTSSHLEEGTEARPLFGDMTPHA---GRAQGEMGGGGTPLTFSTNSSGFEASEFYEDGGCSVS 649
BLAST of mRNA_C-linearis_contig80.15912.1 vs. uniprot
Match: D7FV58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV58_ECTSI) HSP 1 Score: 617 bits (1591), Expect = 4.440e-214 Identity = 316/376 (84.04%), Postives = 333/376 (88.56%), Query Frame = 1
Query: 133 MSLRQQGEAEVADQARA-RVHRRSESEAASGALGIPRPLSSTTYDSPRWRGGGGSKQR-----YGWKTNDSSNTSPEGDGNA-LVSLADLIRNEDKVPATLLYEHTGDTDVAMDARDIGAGGLPHQAMNGGAVGMQEALQAAEHGNSIRLSKFLQDGGSPDTLSRLHHLRWSLLHLAAGCSSMGGRLAFASHRRRPEPDCNDGYATCVSELLAAGADPNVTSSSLGYTPLMSAAFTGSKECCWLLLRAGARLDMRADDGRTAFDFAQKARHLGGGNSGGASDSVLAVLRDPPKKIPRSPTLVMATLSERSRLEPEEEVPSVEVRWRVPSQASLAPTVCGDVERSYVKVWCRGKGKEVIRTKTSTVNVPRRDFCRNQ 1239
MSL QQGE EVAD+ R HRRSESEA+ G PRP +ST+YDSPRWRGGG +KQR YGW+ ND +N SP D N LVSLADLIR EDKVPATLLYEH GDTD MDARDI AGGL HQAMNGGAVGMQEALQAAEHGNS+RLSKFLQDGG+PDTLSRLHHLRWSLLHLAAGCSSMGGRLAFASHRRRPEPDCNDGY TCVSELLAAGADPN+TSSSLGYTPLMSAA TGSKECCWLLLRAGARLDMRADDGRTAFDFAQKARHLGGG+SGG DSVL VLR+PPKKIPRSPTLV+A L+ERS LEPEEEVP VEVRWRVPSQASLAPT+CGDVER Y+K WCRGKGKEVIRTKTSTV+VPRRDFCRNQ
Sbjct: 1 MSLNQQGEPEVADRKTGNRAHRRSESEASGAFGGGPRPFTSTSYDSPRWRGGGANKQRGSGGRYGWRANDGNNVSPADDENPRLVSLADLIRKEDKVPATLLYEHPGDTDAPMDARDIEAGGLTHQAMNGGAVGMQEALQAAEHGNSVRLSKFLQDGGNPDTLSRLHHLRWSLLHLAAGCSSMGGRLAFASHRRRPEPDCNDGYVTCVSELLAAGADPNITSSSLGYTPLMSAALTGSKECCWLLLRAGARLDMRADDGRTAFDFAQKARHLGGGSSGGTHDSVLDVLREPPKKIPRSPTLVIAALAERSSLEPEEEVPPVEVRWRVPSQASLAPTLCGDVERFYLKTWCRGKGKEVIRTKTSTVDVPRRDFCRNQ 376
BLAST of mRNA_C-linearis_contig80.15912.1 vs. uniprot
Match: A0A835YST7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YST7_9STRA) HSP 1 Score: 330 bits (847), Expect = 4.630e-97 Identity = 211/522 (40.42%), Postives = 265/522 (50.77%), Query Frame = 1
Query: 361 LVSLADLIRNEDKV------PATLLYEHTGDTDVAMDARDIGAGGLPHQAMNGGAVGMQEALQAAEHGNSIRLSKFLQDGGSPDTLSRLHHLRWSLLHLAAG------------------------CSSMGGRLAFA--SHRRRPEPDCNDGYATCVSELLAAGADPNVTSSSLGYTPLMSAAFTGSKECCWLLLRAGARLDMRADDGRTAFDFAQKARHLGGGNSGGASDSVLA--------------------------------------------------------------VLRDPPKKIPRSPTLVMATLSERSRLEPE----------------------------------EEVPS---------VEVRWRVPSQASLAPTVCGDVERSYVKVWCRGKGKEVIRTKTSTVNVPRRDFCRNQIIDRGIALRKNLCLPQSQTTSAVIHGLQAGDIYSFTVSCVAELEGALRHSPPSCMSKPLLIPESKEDYQWRLGGLLQRVNGKEMPSPGAAGE 1515
L+SL+DLIR E+ PA LLY + G+ +D GG +A+N GAVG QEALQAAEHGNS L++FLQD G P T SRLHH+RWSLLHLAAG C+ MG L+ A +HR RPEPDCNDGYA C++ LLAAGADPN TS GYTPLM AA TGS E CWLLLRAGA R G+TA DFAQ R G GA + L VL++PP+ +PRSP V+A L++RS ++ E +E S EVRW +PSQASL P CG ER VK W +G+ +V+RT T PRRDFC++ +DRGIALR NL L +T S +IH L+ G YSFTVS +AE++GAL+ SPPS +SK + IP++K+D QW +GG+L ++ + + G E
Sbjct: 185 LMSLSDLIRREEGGRTRGGGPAPLLYSNEGEAGELLDGDGFDKGG-GRKAVNNGAVGTQEALQAAEHGNSALLARFLQDNGDPRTTSRLHHMRWSLLHLAAGFNXXXXXXXXXXXXXXXXXXXXXGCAGMGSALSLAGAAHRSRPEPDCNDGYAACIALLLAAGADPNATSIQGGYTPLMGAAVTGSAESCWLLLRAGANPLARTAAGQTALDFAQTPR---AGAPAGAHQAALKXXXXXXXXXXXXXXXXTALDFAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLQNPPRLVPRSPLQVVARLADRSLVDEEPCRRCLXXXXXXXXXXXXXXXXEASHGFRLVTRSQEDDSQCVEXXXXXXEVRWLIPSQASLLPAHCGAAERYLVKCWSQGQASDVVRTNTGNSLKPRRDFCKHGAMDRGIALRNNLSLQAPRTASTIIHNLRPGREYSFTVSLLAEVDGALQQSPPSAVSKTIYIPKTKDDAQWSVGGVLSKMMPRAQGTDGPLDE 702
BLAST of mRNA_C-linearis_contig80.15912.1 vs. uniprot
Match: A0A7S2CTM4_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CTM4_9STRA) HSP 1 Score: 310 bits (794), Expect = 3.330e-93 Identity = 165/325 (50.77%), Postives = 219/325 (67.38%), Query Frame = 1
Query: 502 GAVGMQEALQAAEHGNSIRLSKFLQDGGSPDTLSRLHHLRWSLLHLAAGCSSMGGRLAFASHRRRPEPDCNDGYATCVSELLAAGADPNVTSSSLGYTPLMSAAFTGSKECCWLLLRAGARLDMRADDGRTAFDFAQKARHLGGGNSGGASDSVLAVLRDPPKKIPRSPTLVMATLSERSRLEPEEEVPSVEVRWRVPSQASLAPTVCGDVERSYVKVWCRGKGKEVIRTKTSTVNVPRRDFCRNQIIDRGIALRKNLCLPQSQTTSAVIHGLQAGDIYSFTVSCVAELEGALRHSPPSCMSKPLLIPESKEDYQWRLGGLLQRV 1476
GAV Q+AL+AAEHGNS L+ +L GG P +SRLHH+ WSLLHLA GC+ MGG ++R RPEPDC +G+ATCVS L+AAGADPNV S YTPLM A+ +G +CC LLL+AGA + A DG+TA D A ++R G VL VL +PP+ +PRSP V A L + E E+ VEVRW++P+ S+A CG+++R V+ + +G+ EV+ + RRDFC+NQ++DRGIALR+NL LPQ +T S +IHGL G Y FTVSC+AE++G++R SPPS MSKPL IP S E+ +W +G +L +V
Sbjct: 16 GAVSTQDALKAAEHGNSDVLAAYLHAGGDPMAVSRLHHMGWSLLHLATGCALMGG--ISNTYRTRPEPDCPNGFATCVSLLMAAGADPNVASKQGHYTPLMGASLSGDADCCRLLLQAGAIVKHMALDGQTALDAANRSRFADG------HMRVLQVLGNPPRLLPRSPLEVTARLLDY--YEGEDRERDVEVRWKIPTTTSMALVKCGEIQRYVVRTYVKGQELEVMHSAVGPGRRQRRDFCQNQVVDRGIALRQNLALPQPRTASTLIHGLIPGVTYHFTVSCIAEIDGSIRDSPPSLMSKPLDIP-SYEEEEWNIGEILDKV 329
BLAST of mRNA_C-linearis_contig80.15912.1 vs. uniprot
Match: A0A8J2SBP4_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SBP4_9STRA) HSP 1 Score: 138 bits (348), Expect = 4.270e-32 Identity = 93/212 (43.87%), Postives = 117/212 (55.19%), Query Frame = 1
Query: 517 QEALQAAEHGNSIRLSKFLQDGGSPDTLSRLHHLRWSLLHLAAGCSSMGGRLAFASHRRRPEPDCNDGYATCVSELLAAGADPNVTSSSLGYTPLMSAAFTGSKECCWLLLRAGARLDMRADDGRTAFDFAQKARHLGGGNSGGASDSVLAVLRDPPKKIPRSPTLVMATLSERSRLEPEEEVPSVEVRWRVPSQASLAPTVCGDVERSYVK 1152
Q+AL+AAEHG++ L+ +L++GG P SRLHH+ WSLLHLAAGC+ GG A ++RRRPEPD G+A CV LLAAGA+P + PL A G LLLRAGA + A RH + +++ +L PPK +PRSP V A LSE + E V VEVRWR P A P V G VER V+
Sbjct: 50 QDALEAAEHGDARALAAYLENGGDPAATSRLHHMGWSLLHLAAGCALAGGPGAAQAYRRRPEPDAPGGFARCVELLLAAGAEP--ATGDERPAPLAGAVLCGDAASARLLLRAGAAAPTEVE--------APPGRH-----TAAEREAMRELLAAPPKLLPRSPLRVEAKLSEYVEGDARERV--VEVRWRPPPPA---PGV-GPVERYVVR 240
BLAST of mRNA_C-linearis_contig80.15912.1 vs. uniprot
Match: A0A7S2XYK3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYK3_9STRA) HSP 1 Score: 112 bits (280), Expect = 3.560e-25 Identity = 57/128 (44.53%), Postives = 79/128 (61.72%), Query Frame = 1
Query: 1126 GDVERSYVKVWCRGKGKEVIRTKTSTVNVPRRDFCRNQIIDRGIALRKNLCLPQSQTTSAVIHGLQAGDIYSFTVSCVAELEGALRHSPPSCMSKPLLIPESKEDYQWRLGGLLQRVNGKEMPSPGAA 1509
G+V + VK W GK +VI T RRDFC+N +++RGIALR+NL LP QT S ++H L G YSFTVS +AEL+G L SPPSCMS+ + IP ++ +W +G + ++ P+P A
Sbjct: 1 GEVIKYVVKCWGNGKMVDVIHATTGVGRGQRRDFCQNGVMNRGIALRQNLNLPPPQTASTIVHNLMPGLHYSFTVSAIAELDGVLCESPPSCMSRVVQIPVRDKEDRWMMGEVFNMMS---TPNPTGA 125
BLAST of mRNA_C-linearis_contig80.15912.1 vs. uniprot
Match: A0A7S4D9X9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9X9_HETAK) HSP 1 Score: 95.1 bits (235), Expect = 4.350e-19 Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 1
Query: 1216 RRDFCRNQIIDRGIALRKNLCLPQSQTTSAVIHGLQAGDIYSFTVSCVAELEGALRHSPPSCMSKPLLIPESKEDYQWRLGGLLQRVNGKEMPSP 1500
RRDFC + ++DRG+ALR+NL LP SAV+H L+ G YSFTVSCVA + G L SPPS +S+ + +P+++++ +W LG + K+ P
Sbjct: 30 RRDFCEDTVVDRGVALRRNLGLPPPPVASAVVHNLRPGAHYSFTVSCVAAVGGRLAESPPSVLSRVVAVPQAEKEDRWMLGMMAGGSGPKDKGGP 124 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig80.15912.1 >prot_C-linearis_contig80.15912.1 ID=prot_C-linearis_contig80.15912.1|Name=mRNA_C-linearis_contig80.15912.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=650bp MSLRQQGEAEVADQARARVHRRSESEAASGALGIPRPLSSTTYDSPRWRGback to top mRNA from alignment at C-linearis_contig80:669438..673717- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig80.15912.1 ID=mRNA_C-linearis_contig80.15912.1|Name=mRNA_C-linearis_contig80.15912.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4280bp|location=Sequence derived from alignment at C-linearis_contig80:669438..673717- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig80:669438..673717- >mRNA_C-linearis_contig80.15912.1 ID=mRNA_C-linearis_contig80.15912.1|Name=mRNA_C-linearis_contig80.15912.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3900bp|location=Sequence derived from alignment at C-linearis_contig80:669438..673717- (Chordaria linearis ClinC8C monoicous)back to top |