mRNA_C-linearis_contig80.15908.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15908.1
Unique NamemRNA_C-linearis_contig80.15908.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:610553..611810 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size225
Cds size123
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15908.1prot_C-linearis_contig80.15908.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 610624..611779 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930581.5203323-UTR-C-linearis_contig80:610552..6106231622930581.5203323-UTR-C-linearis_contig80:610552..610623Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 610553..610623 +
1690881143.9868562-UTR-C-linearis_contig80:610552..6106231690881143.9868562-UTR-C-linearis_contig80:610552..610623Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 610553..610623 +
1622930581.5738585-UTR-C-linearis_contig80:611779..6118101622930581.5738585-UTR-C-linearis_contig80:611779..611810Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 611780..611810 +
1690881144.0240257-UTR-C-linearis_contig80:611779..6118101690881144.0240257-UTR-C-linearis_contig80:611779..611810Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 611780..611810 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930581.5384803-CDS-C-linearis_contig80:610623..6106451622930581.5384803-CDS-C-linearis_contig80:610623..610645Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 610624..610645 +
1690881144.00132-CDS-C-linearis_contig80:610623..6106451690881144.00132-CDS-C-linearis_contig80:610623..610645Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 610624..610645 +
1622930581.55963-CDS-C-linearis_contig80:611678..6117791622930581.55963-CDS-C-linearis_contig80:611678..611779Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 611679..611779 +
1690881144.012057-CDS-C-linearis_contig80:611678..6117791690881144.012057-CDS-C-linearis_contig80:611678..611779Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 611679..611779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15908.1

>prot_C-linearis_contig80.15908.1 ID=prot_C-linearis_contig80.15908.1|Name=mRNA_C-linearis_contig80.15908.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=41bp
MDSILAFAHPRWRCPHAAEASPLTGRPSAPGFLATRPRGP*
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mRNA from alignment at C-linearis_contig80:610553..611810+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15908.1 ID=mRNA_C-linearis_contig80.15908.1|Name=mRNA_C-linearis_contig80.15908.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1258bp|location=Sequence derived from alignment at C-linearis_contig80:610553..611810+ (Chordaria linearis ClinC8C monoicous)
CGAGGGTGAGCTCCGCGTTCTTTTTTTCCCGCACCTTTGTAGCCACTGCC
AGTGCCCCCTTCCGTCCCCTTATGGACTCCATCCTCGCCTTCGGTATTCA
AAGAGTCAGACGAGAGATGGATCAAGCACGGAGGTTGTCGACAATAAAAA
TCTAAGCGTCAGGGACACTTCGTCTTGAAGGAAAGGAAGCCAGTGTAAAC
CCAACAACCAACAAGATGGTAATCGACTGCGGTTGGGTGTCAATGCTGTC
GAGGTTGGAATCAAGACAACGAGATATCGTCAAATACATGACACACCCTA
CACCAATCAAACAGGCCACCCGCAACCCTAGAGAGTAAACCGCTGCCCCC
ATAAGCAAGTGGGCAGGAGGGGGCGGAGGGCAGGTGGCTGTAGAGGCCAA
GTCAGCCATTGCAACCGTAGGCGCAACAGCCAACACTTGGCATCTACGCA
TCCAATCGAAAAAGAGCTGTCGAACCTAACGTTTCGAGCGATCTCTGCCA
AATTTCAACCTCGGGCCAGAGGGGGGGAGGGGCTTTTGGGCGGAGTGGTG
ACGGAAAGCAAACGATCGGCGCCAACAAAAAGAAATGCTAATCCTATCGC
AGGGGAGGCCACTGGGCCACGACAAACCCTTGGCGCCGCTCAAGCAAGCC
TCAACACAACAACCACCAGCAGCGAAGCCAGCCAGACCTCTCTTACCTCC
CGTCTTCCCTGCTTCAACCAGCGCCGGCAGCAGCAGCAGCAGCAGCAGCA
GCAGGAACAGGAACAGCATGCGACAGCGACAGCGGTGACATCAAGACGAC
GGAGGTGTCAGCCGGGCAAAACAATATGATAATCGACTGCGGTTGCATGG
ATGCATCCAATCCAAAAAGAGATCGAGGAAGCAACAAACCCCGGAAAGTA
GAACAACACGAAAACAAGAAAAAGACGCCAGCAGCAACAACAACGCTAAG
ACACCGGCACATCTACCTAACGTTTCGAGCTCTCGTTGCCAACCTTCAAC
CTCGGGGCGGAGGGGGGGAGGGGCTTTTGGGCGGAGTGGCGATCTCGCAA
TGGTTGGCGCCAACAAAAAGCAACGTCATCGCAGGAGCAATCCGAAATCT
GTATTAAATAACAACACTTGTAACAGCTCACCCCCGCTGGCGCTGTCCTC
ATGCCGCTGAAGCATCGCCGCTGACTGGTCGGCCGTCGGCGCCTGGCTTC
CTTGCCACACGGCCTCGGGGACCGTGACCTTCGCCCCGTTCACGGTGGCT
GTCCTCGC
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Coding sequence (CDS) from alignment at C-linearis_contig80:610553..611810+

>mRNA_C-linearis_contig80.15908.1 ID=mRNA_C-linearis_contig80.15908.1|Name=mRNA_C-linearis_contig80.15908.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at C-linearis_contig80:610553..611810+ (Chordaria linearis ClinC8C monoicous)
ATGGACTCCATCCTCGCCTTCGATGGACTCCATCCTCGCCTTCGCTCACC
CCCGCTGGCGCTGTCCTCATGCCGCTGAAGCATCGCCGCTGACTGGTCGG
CCGTCGGCGCCTGGCTTCCTTGCCACACGGCCTCGGGGACCGTGACTCAC
CCCCGCTGGCGCTGTCCTCATGCCGCTGAAGCATCGCCGCTGACTGGTCG
GCCGTCGGCGCCTGGCTTCCTTGCCACACGGCCTCGGGGACCGTGA
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