mRNA_C-linearis_contig80.15899.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15899.1
Unique NamemRNA_C-linearis_contig80.15899.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig80.15899.1 vs. uniprot
Match: D7FV71_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV71_ECTSI)

HSP 1 Score: 406 bits (1043), Expect = 2.240e-132
Identity = 260/456 (57.02%), Postives = 302/456 (66.23%), Query Frame = 3 
Query:   78 MSFPGKNHGSGSRKRPLEAPDEEGTAAGSPATNLNFPRLAPPPAP-----TTGAKGSNNGDRDPYGEDSDIFDEDHLPNDTMATVLALQKEFYFDGKNSAPGPRPSGERTGVVLHHQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWGIMSTEHYLRVVSALLACWNSAQSGSPPQQVAIKTVSSTTP--CFVSSSCGTISNMLGETSSQLRGGGSSRPGTSAASLGGRTSPSPTS-SPXXXXXXXSAPEHRTSFARDVLERLVLSNTKAYASRKQVSNAMREVQQIR-EGGAGAAQGKAGKGSSRDXXXXXXXXXXXXXXXXXXXXXDDQDLRSLKRSEEEVLSVTSKLIRAGFLLPRRDVGREEAYWFSMPQLGKVITVISRGRKDIVAALKRTRYKEMRRAAMETKNPAKSTGLPLSFHVRDLLGLGMIQELDTPSGMFFRLPSDAS 1418
            MS P  + G+  RKRPLE P  +  A  S +      +  PPP+        G   SN+G +D YG++SDIFD   LPNDTMATVL+LQ+EFY       P     GERTGVVL HQIYTVLENRTAVD+ELTAMRK+NVLRTFRLGTGREDWGIMST HYLRV+S  L    + ++GS  +Q A  T +S      F  SS  T+       ++    G             GR SP+ TS S        SA EH +S AR+VLERLVLSNTKAYASRK+V N MREV++   E   G             XXXXX                +++DLRSLK++EEEV+S+TSKLIRAGFLLPRRDVGREEAYWFSMPQLGKVIT I+RGRKD++AALKRTRYKEMRRAA+E KNPAK+TGLPLSFHVRDLLGLGMI+ELDTPSGMF RLPSD S
Sbjct:    1 MSAPRNSDGTSGRKRPLEPPRGDEEAPQSLSRRTPSRQFEPPPSAGDLIRDDGNSKSNDG-QDQYGDESDIFDVADLPNDTMATVLSLQREFY----GGQPPTGSVGERTGVVLQHQIYTVLENRTAVDVELTAMRKENVLRTFRLGTGREDWGIMSTAHYLRVISNCLGDTITRENGS--KQPARTTAASVRGGHAFARSSTSTVGGSRNTANAXXXRGSXXXX---XXXXXGRRSPTSTSFSVSGASPKPSAQEHHSSLARNVLERLVLSNTKAYASRKEVLNTMREVRESNTEASGGXXXXXXXXXXXXXXXXXXRGKGKERAPDRIMGGDEEKDLRSLKQTEEEVVSLTSKLIRAGFLLPRRDVGREEAYWFSMPQLGKVITSIARGRKDVLAALKRTRYKEMRRAALEKKNPAKATGLPLSFHVRDLLGLGMIRELDTPSGMFLRLPSDPS 446
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BLAST of mRNA_C-linearis_contig80.15899.1 vs. uniprot
Match: W7TZ12_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZ12_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.760e-21
Identity = 121/386 (31.35%), Postives = 167/386 (43.26%), Query Frame = 3 
Query:  267 SDIFDEDHLPNDTMATVLALQKEFYFDGKNSAPGPRPSGERTGVVLHHQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWGIMSTEHYLRVVSALLACWNSAQSGSPPQQVAIKTVSSTTPCFVSSSCGTISNMLGETSSQLRGGGSSRPGTSAASLGGRTSPSPTSSPXXXXXXXSAPEHRTSFARDVLERLVLSNTKAYASRKQVSNAMRE-VQQIREGGAGA---AQGKAGKGSSRDXXXXXXXXXXXXXXXXXXXXXDDQDLRSLKRSEEEVLSVTSKLIRAGFLLPRRDVGRE-EAYWFSMPQLGKVITVISRGRKDIVAALKRTRYKEMRRAAMETKNPAKSTGLPLSFHVRDLLGLGMIQELDTPSGMFFRLPS 1409
            +D+  E HL +D +A +L L + FY  G ++    R   E   VVL HQ+YTVL++ T+VD+EL  ++  N +R FRL T R D G++ T  Y   V A  A + + Q G+  +   I            S C +++    E  +  R   SS     A+ L  R                       +   D   + V   T    ++ Q+ +   E  Q I    A A   +   AG G  R                            SL  S +EV  V   LI  GFL  R D   E  AYWFS P+LG V   + RGRK I+AAL R+RYKE+    +      K T L LSFH+ DL+G G +  + T SGMF RLP+
Sbjct:   54 NDVSSE-HL-SDVVAAILLLIQRFY-QGTSTNDSRRLKMENCPVVLQHQLYTVLDDHTSVDVELEDLKTSNHVRLFRLLTLRRDIGVLLTSTYKARVQAAFAAF-AQQEGTRGRDENI----------TESICNSVTERE-EDGNDKRSRNSS---VQASKLSAR---------------------HMALVSDFFLKTVDRVTNIIMTQHQLESLWGEYTQSISHSQAPACPRSSMSAGPGKRRAAP-------------------------SLLPSIDEVTRV---LIHYGFLARRVDAVYEGPAYWFSAPELGSVTASLPRGRKAILAALARSRYKELSEQNLGALR-LKGTALSLSFHMADLVGSGEVLAVPTASGMFLRLPA 371
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BLAST of mRNA_C-linearis_contig80.15899.1 vs. uniprot
Match: K8Z0I8_NANGC (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z0I8_NANGC)

HSP 1 Score: 96.3 bits (238), Expect = 3.020e-18
Identity = 109/347 (31.41%), Postives = 147/347 (42.36%), Query Frame = 3 
Query:  384 ERTGVVLHHQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWGIMSTEHYLRVVSALLACWNSAQSGSPPQQVAIKTVSSTTPCFVSSSCGTISNMLGETSSQLRGGGSSRPGTSAASLGGRTSPSPTSSPXXXXXXXSAPEHRTSFARDVLERLVLSNTKAYASRKQVSNAMRE-VQQIREGGAGA---AQGKAGKGSSRDXXXXXXXXXXXXXXXXXXXXXDDQDLRSLKRSEEEVLSVTSKLIRAGFLLPRRDVGRE-EAYWFSMPQLGKVITVISRGRKDIVAALKRTRYKEMRRAAMETKNPAKSTGLPLSFHVRDLLGLGMIQELDTPSGMFFRLPS 1409
            E   VVL HQ+YTVL++ T+VD+EL  ++  N +R FRL T R D G++ T  Y   V A  A + + Q G+  +   I            S C +++    E  +  R   SS     A+ L  R                       +   D   + V   T    ++ Q+ +   E  Q I    A A   +   AG G  R                            SL  S +EV  V   LI  GFL  R D   E  AYWFS P+LG V   + RGRK I+AAL R+RYKE+    +      K T L LSFH+ DL+G G +  + T SGMF RLP+
Sbjct:    2 ENCPVVLQHQLYTVLDDHTSVDVELEDLKTSNHVRLFRLLTLRRDIGVLLTSTYKARVQAAFAAF-AQQEGTRGRDENI----------TESICNSVTERE-EDGNDKRSRNSS---VQASKLSAR---------------------HMALVSDFFLKTVDRVTNISMTQHQLESLWGEYTQSISHSQAPACPRSSMSAGPGKRRAAP-------------------------SLLPSIDEVTRV---LIHYGFLARRVDAVYEGPAYWFSAPELGSVTASLPRGRKAILAALARSRYKELSEQNLGALR-LKGTALSLSFHMADLVGSGEVLAVPTASGMFLRLPA 283
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BLAST of mRNA_C-linearis_contig80.15899.1 vs. uniprot
Match: A0A835ZFF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF9_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.920e-13
Identity = 41/102 (40.20%), Postives = 64/102 (62.75%), Query Frame = 3 
Query: 1101 SVTSKLIRAGFLLPRRDVGREEAYWFSMPQLGKVITVISRGRKDIVAALKRTRYKEMRRAAMETKNPAKSTGLPLSFHVRDLLGLGMIQELDTPSGMFFRLP 1406
            S    L  A  LLPRRD+    AYWF+ P    V+  +++G+ +++ A+ R RY EMR++ +  K   K++ LP+ FH+RDL GLG +  L+TPSG  +++P
Sbjct:  150 SAVRALCDAHLLLPRRDIREGGAYWFTTPLSCSVMANLTKGQTEVLKAVLRKRYGEMRKSEL-LKLKLKTSPLPMKFHLRDLEGLGQLTRLETPSGDIYKIP 250
[Close]
BLAST of mRNA_C-linearis_contig80.15899.1 vs. uniprot
Match: A0A0A0K8K8_CUCSA (Uncharacterized protein n=6 Tax=Benincaseae TaxID=1003877 RepID=A0A0A0K8K8_CUCSA)

HSP 1 Score: 80.1 bits (196), Expect = 6.200e-13
Identity = 39/101 (38.61%), Postives = 65/101 (64.36%), Query Frame = 3 
Query: 1110 SKLIRAGFLLPRRDVGREEAYWFSMPQLGKVITVISRGRKDIVAALKRTRYKEMRRAAMETKNPAKSTGLPLSFHVRDLLGLGMIQELDTPSGMFFRLPSD 1412
            S L+ AG L   R +     YWF++P +G V+  IS+GRK++++ LKRT+YKEM   +++ K   + + L + FH+RDL+G G +Q + +P+G+  +L  D
Sbjct:  171 SLLMNAGLL--NRQLIDPNVYWFAIPSIGSVLKGISQGRKELISLLKRTKYKEMMMTSLQKKR-LRFSSLDMRFHIRDLIGSGYLQTVQSPTGLLVQLSKD 268
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BLAST of mRNA_C-linearis_contig80.15899.1 vs. uniprot
Match: A0A7I8KNL8_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KNL8_SPIIN)

HSP 1 Score: 77.8 bits (190), Expect = 3.150e-12
Identity = 44/112 (39.29%), Postives = 71/112 (63.39%), Query Frame = 3 
Query: 1077 KRSEEEVLSVTSKLIRAGFLLPRRDVGREEAYWFSMPQLGKVITVISRGRKDIVAALKRTRYKEMRRAAMETKNPAKSTGLPLSFHVRDLLGLGMIQELDTPSGMFFRLPSD 1412
            K  EE V    S LI AGFL   R +     YWFS+P +G ++  +S+GRK++V+ L++ +++EM  AA+E K    S  L + FH+RDL+G G+++ +++P+G+  RL  D
Sbjct:  153 KVKEEHV----SLLINAGFLT--RQLVDPSMYWFSIPNIGLLLKGLSQGRKELVSLLRKRKHREMMLAALEKKRLRLSL-LDMRFHLRDLIGSGVLKTVESPTGLIVRLSKD 257
[Close]
BLAST of mRNA_C-linearis_contig80.15899.1 vs. uniprot
Match: A0A7I8IXA3_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8IXA3_SPIIN)

HSP 1 Score: 77.8 bits (190), Expect = 3.470e-12
Identity = 44/112 (39.29%), Postives = 71/112 (63.39%), Query Frame = 3 
Query: 1077 KRSEEEVLSVTSKLIRAGFLLPRRDVGREEAYWFSMPQLGKVITVISRGRKDIVAALKRTRYKEMRRAAMETKNPAKSTGLPLSFHVRDLLGLGMIQELDTPSGMFFRLPSD 1412
            K  EE V    S LI AGFL   R +     YWFS+P +G ++  +S+GRK++V+ L++ +++EM  AA+E K    S  L + FH+RDL+G G+++ +++P+G+  RL  D
Sbjct:  159 KVKEEHV----SLLINAGFLT--RQLVDPSMYWFSIPNIGLLLKGLSQGRKELVSLLRKRKHREMMLAALEKKRLRLSL-LDMRFHLRDLIGSGVLKTVESPTGLIVRLSKD 263
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BLAST of mRNA_C-linearis_contig80.15899.1 vs. uniprot
Match: A0A061R3E4_9CHLO (Serine/threonine kinase 19 (Fragment) n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R3E4_9CHLO)

HSP 1 Score: 76.6 bits (187), Expect = 4.700e-12
Identity = 38/95 (40.00%), Postives = 62/95 (65.26%), Query Frame = 3 
Query: 1116 LIRAGFLLPRRDVGREEAYWFSMPQLGKVITVISRGRKDIVAALKRTRYKEMRRAAMETKNPAKSTGLPLSFHVRDLLGLGMIQELDTPSGMFFR 1400
            L+++G L  +R  G+ EAYWF++P  G V++ I  GR++++AA K+ RY+        TK P +S+ L   FH+RDL+GLG+++ ++T SG   R
Sbjct:  130 LLKSGCLSRQRRPGQPEAYWFAIPGAGPVLSSILNGRQELLAAFKK-RYRHGVLEKEITKKPLRSSRLGAGFHIRDLVGLGLVERIETTSGTMLR 223
[Close]
BLAST of mRNA_C-linearis_contig80.15899.1 vs. uniprot
Match: A0A833R7C1_9POAL (Serine/threonine-protein kinase 19 isoform X1 n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833R7C1_9POAL)

HSP 1 Score: 76.3 bits (186), Expect = 1.260e-11
Identity = 37/99 (37.37%), Postives = 64/99 (64.65%), Query Frame = 3 
Query: 1116 LIRAGFLLPRRDVGREEAYWFSMPQLGKVITVISRGRKDIVAALKRTRYKEMRRAAMETKNPAKSTGLPLSFHVRDLLGLGMIQELDTPSGMFFRLPSD 1412
            LI AG L   R +  +  YWF++P +G ++  +S+GRK++++ + RT+YKEM  A +E K   + + L + FH+RDL+G G+++ + +P G+  RL  D
Sbjct:  174 LINAGLLT--RQLIDQNLYWFAIPNIGSILKGLSQGRKELISLINRTKYKEMVLANLEKKK-LRLSPLDIRFHIRDLIGSGLLKTVQSPIGILIRLSRD 269
[Close]
BLAST of mRNA_C-linearis_contig80.15899.1 vs. uniprot
Match: A0A1R3K7R9_COCAP (Serine-threonine protein kinase 19 n=2 Tax=Corchorus TaxID=93758 RepID=A0A1R3K7R9_COCAP)

HSP 1 Score: 75.1 bits (183), Expect = 2.920e-11
Identity = 39/101 (38.61%), Postives = 63/101 (62.38%), Query Frame = 3 
Query: 1110 SKLIRAGFLLPRRDVGREEAYWFSMPQLGKVITVISRGRKDIVAALKRTRYKEMRRAAMETKNPAKSTGLPLSFHVRDLLGLGMIQELDTPSGMFFRLPSD 1412
            S LI AG L   R +     YWF++P +G ++  +S+GRK++++ L R RYKEM  A +E K   + + L + FH+RDL+G G+++   TP+G+  R+  D
Sbjct:  168 SLLINAGLLT--RQLIDPSMYWFAIPNIGSILKGLSQGRKEVLSLLNRRRYKEMMLAPLE-KMRLRFSPLDMRFHLRDLIGSGLLKTAHTPTGIVIRISKD 265
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15899.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV71_ECTSI2.240e-13257.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TZ12_9STRA2.760e-2131.35Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
K8Z0I8_NANGC3.020e-1831.41Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A835ZFF9_9STRA1.920e-1340.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0A0K8K8_CUCSA6.200e-1338.61Uncharacterized protein n=6 Tax=Benincaseae TaxID=... [more]
A0A7I8KNL8_SPIIN3.150e-1239.29Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A7I8IXA3_SPIIN3.470e-1239.29Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A061R3E4_9CHLO4.700e-1240.00Serine/threonine kinase 19 (Fragment) n=1 Tax=Tetr... [more]
A0A833R7C1_9POAL1.260e-1137.37Serine/threonine-protein kinase 19 isoform X1 n=1 ... [more]
A0A1R3K7R9_COCAP2.920e-1138.61Serine-threonine protein kinase 19 n=2 Tax=Corchor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:543366..546479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score412.9
Seed ortholog evalue1.9e-112
Seed eggNOG ortholog2880.D7FV71
Preferred nameSTK19
KEGG koko:K08880
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016773,GO:0019538,GO:0031974,GO:0031981,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0070013,GO:0071704,GO:0140096,GO:1901564
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs296WV@1,2RDW5@2759
Ec32 ortholog descriptionSerine-threonine protein kinase 19
Ec32 orthologEc-12_007320.1
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Exons7
Model size2019
Cds size1344
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930592.6164517-UTR-C-linearis_contig80:543365..5434421622930592.6164517-UTR-C-linearis_contig80:543365..543442Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 543366..543442 +
1690881149.713036-UTR-C-linearis_contig80:543365..5434421690881149.713036-UTR-C-linearis_contig80:543365..543442Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 543366..543442 +
1622930592.7741535-UTR-C-linearis_contig80:545881..5464791622930592.7741535-UTR-C-linearis_contig80:545881..546479Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 545882..546479 +
1690881149.8124995-UTR-C-linearis_contig80:545881..5464791690881149.8124995-UTR-C-linearis_contig80:545881..546479Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 545882..546479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930592.6328366-CDS-C-linearis_contig80:543442..5437801622930592.6328366-CDS-C-linearis_contig80:543442..543780Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 543443..543780 +
1690881149.7294981-CDS-C-linearis_contig80:543442..5437801690881149.7294981-CDS-C-linearis_contig80:543442..543780Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 543443..543780 +
1622930592.6504226-CDS-C-linearis_contig80:544035..5441941622930592.6504226-CDS-C-linearis_contig80:544035..544194Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 544036..544194 +
1690881149.7409053-CDS-C-linearis_contig80:544035..5441941690881149.7409053-CDS-C-linearis_contig80:544035..544194Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 544036..544194 +
1622930592.6715767-CDS-C-linearis_contig80:544225..5443221622930592.6715767-CDS-C-linearis_contig80:544225..544322Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 544226..544322 +
1690881149.75487-CDS-C-linearis_contig80:544225..5443221690881149.75487-CDS-C-linearis_contig80:544225..544322Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 544226..544322 +
1622930592.6915786-CDS-C-linearis_contig80:544409..5447541622930592.6915786-CDS-C-linearis_contig80:544409..544754Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 544410..544754 +
1690881149.7654352-CDS-C-linearis_contig80:544409..5447541690881149.7654352-CDS-C-linearis_contig80:544409..544754Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 544410..544754 +
1622930592.7111971-CDS-C-linearis_contig80:544802..5448971622930592.7111971-CDS-C-linearis_contig80:544802..544897Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 544803..544897 +
1690881149.778366-CDS-C-linearis_contig80:544802..5448971690881149.778366-CDS-C-linearis_contig80:544802..544897Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 544803..544897 +
1622930592.7390425-CDS-C-linearis_contig80:545258..5453371622930592.7390425-CDS-C-linearis_contig80:545258..545337Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 545259..545337 +
1690881149.7894897-CDS-C-linearis_contig80:545258..5453371690881149.7894897-CDS-C-linearis_contig80:545258..545337Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 545259..545337 +
1622930592.7610464-CDS-C-linearis_contig80:545650..5458811622930592.7610464-CDS-C-linearis_contig80:545650..545881Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 545651..545881 +
1690881149.802135-CDS-C-linearis_contig80:545650..5458811690881149.802135-CDS-C-linearis_contig80:545650..545881Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 545651..545881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15899.1prot_C-linearis_contig80.15899.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 543443..545881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15899.1

>prot_C-linearis_contig80.15899.1 ID=prot_C-linearis_contig80.15899.1|Name=mRNA_C-linearis_contig80.15899.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=448bp
MSFPGKNHGSGSRKRPLEAPDEEGTAAGSPATNLNFPRLAPPPAPTTGAK
GSNNGDRDPYGEDSDIFDEDHLPNDTMATVLALQKEFYFDGKNSAPGPRP
SGERTGVVLHHQIYTVLENRTAVDLELTAMRKDNVLRTFRLGTGREDWGI
MSTEHYLRVVSALLACWNSAQSGSPPQQVAIKTVSSTTPCFVSSSCGTIS
NMLGETSSQLRGGGSSRPGTSAASLGGRTSPSPTSSPPSGAPTKSAPEHR
TSFARDVLERLVLSNTKAYASRKQVSNAMREVQQIREGGAGAAQGKAGKG
SSRDAGGGAASGSGQQRNSKGKGGGDDQDLRSLKRSEEEVLSVTSKLIRA
GFLLPRRDVGREEAYWFSMPQLGKVITVISRGRKDIVAALKRTRYKEMRR
AAMETKNPAKSTGLPLSFHVRDLLGLGMIQELDTPSGMFFRLPSDAS*
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mRNA from alignment at C-linearis_contig80:543366..546479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15899.1 ID=mRNA_C-linearis_contig80.15899.1|Name=mRNA_C-linearis_contig80.15899.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3114bp|location=Sequence derived from alignment at C-linearis_contig80:543366..546479+ (Chordaria linearis ClinC8C monoicous)
CCTCTGCCCAGCGCCCGCGCAGCTCGCACGCCCACCAGCAGAGCTCCTCG
TGGCGCAGCGGTGTGGTCGATACTTTCATGAGTTTTCCTGGAAAGAACCA
TGGTAGCGGTAGCCGCAAGCGACCGCTCGAGGCGCCAGATGAAGAGGGTA
CGGCGGCAGGATCTCCGGCTACAAACTTAAACTTCCCGCGACTTGCACCA
CCACCGGCACCCACCACCGGGGCCAAAGGAAGTAACAATGGCGACCGCGA
TCCGTATGGAGAGGACTCCGATATCTTCGACGAGGACCACCTACCGAACG
ACACCATGGCAACGGTGTTGGCCCTGCAGAAGGAGTTTTATTTTGATGGG
AAAAACTCCGCTCCCGGCCCAAGACCGAGCGGGGAACGCACTGGCGTTGT
ATTGCATCACCAAATGTAAGTAATCCATTTTATGCGCCAAGGCCATGTTG
CTGTATTGTACAGTTTTCATAGTCAAAACAGCCTCTTGTGGTAGCCACAA
TATTGTGATTCGTTGTATCAACTTGACTCGCCACCACCACCGCCGTGTTA
CTCGACACTCCTCAGACGTAGCGGACACCGCAATGTACACTTTCTGCCAC
GCCAGAATTGCATCATCGGCCATCTCTCCTGACTGCTGTAGCATGGCCCT
TCATCCCACACTTTTCGCAGCTACACCGTGCTCGAGAATAGGACAGCGGT
CGATCTTGAGCTTACGGCCATGCGCAAAGATAACGTCCTCCGAACGTTCC
GGCTTGGGACTGGTCGTGAAGACTGGGGGATCATGAGCACGGAGCACTAC
CTCCGAGTGGTGAGCGCATTGTTGGCGTGGTCAAACAACGAGGCACGACA
AACGTGTTAGCTGGAACTCTGCGCAATCAGGCAGTCCCCCTCAGCAGGTA
GCGATCAAAACGGTGTCATCTACAACCCCGTGCTTCGTATCTTCGTCGTG
TGGTACAGTATCGTGATTTGATGTCGAAAGCTTCAAAAGAACCTTCACCC
CCTCCCTCTTACTCTGAACGACTGTAAACAATCCCTGACATCAGATATCC
AACATGTTGGGCGAAACCAGCAGCCAGCTCCGAGGCGGTGGCTCTAGTCG
GCCGGGAACGAGCGCAGCGTCACTGGGCGGTAGGACAAGCCCAAGCCCGA
CCTCCTCCCCCCCGTCTGGGGCCCCTACGAAATCTGCCCCGGAGCATCGG
ACCTCGTTTGCGAGAGATGTCCTTGAGCGCCTGGTGCTGTCGAACACGAA
AGCTTACGCCTCTCGAAAGCAGGTGTCCAATGCCATGCGAGAGGTACAGC
AAATCCGTGAGGGGGGTGCCGGCGCAGCGCAGGGCAAGGCAGGGAAGGGC
AGCAGCCGTGATGCTGGTGGTGGCGCTGCCAGCGGTAGTGTTGCCAGGGA
TGAAAGCAGTCGACTCGAGAGTTCGGGTGAGAGAAAGGGGCAGCAGCGCA
ACTCCAAGGGGAAGGGCGGGGGCGATGATCAGGACTTGAGGAGCTTGAAA
AGAAGCGAAGAGGAAGTGCTCTCTGTGACCAGGTAAATGTCTAAAAAGAG
AGCGCTAGAATAGTGTACGAAGTATGGGCGGGACACATGCGTAAGCGTGC
TGTTCACATTTTTCTCTGGGTAGACGGCGTCTGCCACAGGCACTTGTTTG
GGACCCCTCAAACGAGCGAGGATCATTTCTTTGTGCTGCAAATGGCCATG
CAGGCACATGTACGGGTGGTGTGAATTTTAAACGCTGATGCAAGGCTGCT
CGAGCGCTACTAAACCTCCCCATAAGCAGTACAGTATGTGTCTCTCGCCC
TTCTGCTGCCTCGACCAACCCCACGAGCACCCGTAATCGCATCTTTCCGT
GATGCACTTGCTTCTACGTCCACGCCCCGTCTCGCCACACCAGCAAGCTT
ATTCGGGCTGGATTTCTGCTGCCAAGGCGAGATGTCGGCCGCGAAGAGGC
CTACTGGTTCTCGATGCCTCAGGTGATCGCCTGTTGTATTGACGTTAATA
CCGGAGGTAGATTAGCGTGTCCGTCCGGTAATTTTTCTCTGGGAGGGCCT
ATGATGAGGGACGGAGTCGACAAGCCAAAAACGCGCGAGCTCTGCGCTTG
AAACATGCGGTGATTCTTTCGTCTTGAAGTCGTACCCGAACCCGTCCGTG
CAGGTCGCGAGGAAAGAAGGACCCTTGAACTCTTCACACCCTGTGGCCCA
CCATATCGTACCTTGTTGTGAATACGCCCCCCTTGTGATGTGTCTACTTT
GTCTGCCGGCTGTGCGTGTGCTTCGTCGTACACAGCTGGGCAAGGTGATC
ACGGTGATCAGCCGGGGACGGAAAGATATCGTAGCTGCCCTCAAGCGCAC
GCGGTACAAAGAGATGAGGCGCGCGGCCATGGAAACGAAAAATCCCGCCA
AGAGCACGGGTTTGCCGCTCAGCTTTCATGTCAGAGACCTGTTGGGACTG
GGGATGATTCAGGAACTGGACACACCATCTGGGATGTTCTTCAGGCTACC
ATCAGACGCTTCTTAAACCATACCTAGGTTTTGATGTGTTTCACGTATTT
ATAAGTCGGCGGAGCTGGATCCTGCTTGCTTCTAAAAACGGATTCCTTGG
AATTTGTAGTTGGGGCGGTGATGGAGGATTAGTGCGTCTACAACAGCAGT
CCCCTGGAACGACGCTTTCACACGCTGGACGTAGAATGCTGACATTTACA
GATACTCCGTAGTAGGGAGTAAAAGACGTATGGAGTATTTTTGATCGAAT
TGGCAGTTCCAGCGAAAATCCATAGCAAACCGTGGAGCACGAAGTTGTGG
CCTTTTTGCCTTTTGGTATTTACTGTAGCTCGGGCTTGTCGGGTTGTACG
TTTCAGTTGCTGCTGTGGTAACAGGTGGTATATGTTTTCTTGTCTGGTGG
TCAACGGCGGTTTGCGGTTTGTGCAAGTGTTTCTTTTGACAGGTGCTCGC
ATCTTGGCGAACGCAGATCGGCAGAACTTGAGAGAAAGGGTCATCGTTCT
TGTGTGTGACCGACCAGGCACATACGAAATAGCGCGATGAAAATGAAGTC
TCGACGAAAACATCTCCGTTCCCGTAAGGTTTTTCAAGTTCTGGACAGTG
GCGAGAGTGTCTGG
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Coding sequence (CDS) from alignment at C-linearis_contig80:543366..546479+

>mRNA_C-linearis_contig80.15899.1 ID=mRNA_C-linearis_contig80.15899.1|Name=mRNA_C-linearis_contig80.15899.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2688bp|location=Sequence derived from alignment at C-linearis_contig80:543366..546479+ (Chordaria linearis ClinC8C monoicous)
ATGAGTTTTCCTGGAAAGAACCATGGTAGCGGTAGCCGCAAGCGACCGCT
CGAGGCGCCAGATGAAGAGGGTACGGCGGCAGGATCTCCGGCTACAAACT
TAAACTTCCCGCGACTTGCACCACCACCGGCACCCACCACCGGGGCCAAA
GGAAGTAACAATGGCGACCGCGATCCGTATGGAGAGGACTCCGATATCTT
CGACGAGGACCACCTACCGAACGACACCATGGCAACGGTGTTGGCCCTGC
AGAAGGAGTTTTATTTTGATGGGAAAAACTCCGCTCCCGGCCCAAGACCG
AGCGGGGAACGCACTGGCGTTGTATTGCATCACCAAATATGAGTTTTCCT
GGAAAGAACCATGGTAGCGGTAGCCGCAAGCGACCGCTCGAGGCGCCAGA
TGAAGAGGGTACGGCGGCAGGATCTCCGGCTACAAACTTAAACTTCCCGC
GACTTGCACCACCACCGGCACCCACCACCGGGGCCAAAGGAAGTAACAAT
GGCGACCGCGATCCGTATGGAGAGGACTCCGATATCTTCGACGAGGACCA
CCTACCGAACGACACCATGGCAACGGTGTTGGCCCTGCAGAAGGAGTTTT
ATTTTGATGGGAAAAACTCCGCTCCCGGCCCAAGACCGAGCGGGGAACGC
ACTGGCGTTGTATTGCATCACCAAATCTACACCGTGCTCGAGAATAGGAC
AGCGGTCGATCTTGAGCTTACGGCCATGCGCAAAGATAACGTCCTCCGAA
CGTTCCGGCTTGGGACTGGTCGTGAAGACTGGGGGATCATGAGCACGGAG
CACTACCTCCGAGTGGTGAGCGCATTGTTGGCGTGCTACACCGTGCTCGA
GAATAGGACAGCGGTCGATCTTGAGCTTACGGCCATGCGCAAAGATAACG
TCCTCCGAACGTTCCGGCTTGGGACTGGTCGTGAAGACTGGGGGATCATG
AGCACGGAGCACTACCTCCGAGTGGTGAGCGCATTGTTGGCGTGCTGGAA
CTCTGCGCAATCAGGCAGTCCCCCTCAGCAGGTAGCGATCAAAACGGTGT
CATCTACAACCCCGTGCTTCGTATCTTCGTCGTGTGGTACACTGGAACTC
TGCGCAATCAGGCAGTCCCCCTCAGCAGGTAGCGATCAAAACGGTGTCAT
CTACAACCCCGTGCTTCGTATCTTCGTCGTGTGGTACAATATCCAACATG
TTGGGCGAAACCAGCAGCCAGCTCCGAGGCGGTGGCTCTAGTCGGCCGGG
AACGAGCGCAGCGTCACTGGGCGGTAGGACAAGCCCAAGCCCGACCTCCT
CCCCCCCGTCTGGGGCCCCTACGAAATCTGCCCCGGAGCATCGGACCTCG
TTTGCGAGAGATGTCCTTGAGCGCCTGGTGCTGTCGAACACGAAAGCTTA
CGCCTCTCGAAAGCAGGTGTCCAATGCCATGCGAGAGGTACAGCAAATCC
GTGAGGGGGGTGCCGGCGCAGCGCAGGGCAAGGCAGGGAAGGGCAGCAGC
CGTGATGCTGGTGGTGGCGCTGCCAGCGGTAGTATATCCAACATGTTGGG
CGAAACCAGCAGCCAGCTCCGAGGCGGTGGCTCTAGTCGGCCGGGAACGA
GCGCAGCGTCACTGGGCGGTAGGACAAGCCCAAGCCCGACCTCCTCCCCC
CCGTCTGGGGCCCCTACGAAATCTGCCCCGGAGCATCGGACCTCGTTTGC
GAGAGATGTCCTTGAGCGCCTGGTGCTGTCGAACACGAAAGCTTACGCCT
CTCGAAAGCAGGTGTCCAATGCCATGCGAGAGGTACAGCAAATCCGTGAG
GGGGGTGCCGGCGCAGCGCAGGGCAAGGCAGGGAAGGGCAGCAGCCGTGA
TGCTGGTGGTGGCGCTGCCAGCGGTAGTGGGCAGCAGCGCAACTCCAAGG
GGAAGGGCGGGGGCGATGATCAGGACTTGAGGAGCTTGAAAAGAAGCGAA
GAGGAAGTGCTCTCTGTGACCAGGGGCAGCAGCGCAACTCCAAGGGGAAG
GGCGGGGGCGATGATCAGGACTTGAGGAGCTTGAAAAGAAGCGAAGAGGA
AGTGCTCTCTGTGACCAGCAAGCTTATTCGGGCTGGATTTCTGCTGCCAA
GGCGAGATGTCGGCCGCGAAGAGGCCTACTGGTTCTCGATGCCTCAGCAA
GCTTATTCGGGCTGGATTTCTGCTGCCAAGGCGAGATGTCGGCCGCGAAG
AGGCCTACTGGTTCTCGATGCCTCAGCTGGGCAAGGTGATCACGGTGATC
AGCCGGGGACGGAAAGATATCGTAGCTGCCCTCAAGCGCACGCGGTACAA
AGAGATGAGGCGCGCGGCCATGGAAACGAAAAATCCCGCCAAGAGCACGG
GTTTGCCGCTCAGCTTTCATGTCAGAGACCTGTTGGGACTGGGGATGATT
CAGGAACTGGACACACCATCTGGGATGTTCTTCAGGCTACCATCAGACGC
TTCTTAACTGGGCAAGGTGATCACGGTGATCAGCCGGGGACGGAAAGATA
TCGTAGCTGCCCTCAAGCGCACGCGGTACAAAGAGATGAGGCGCGCGGCC
ATGGAAACGAAAAATCCCGCCAAGAGCACGGGTTTGCCGCTCAGCTTTCA
TGTCAGAGACCTGTTGGGACTGGGGATGATTCAGGAACTGGACACACCAT
CTGGGATGTTCTTCAGGCTACCATCAGACGCTTCTTAA
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