mRNA_C-linearis_contig80.15898.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig80.15898.1 vs. uniprot
Match: D7FV70_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV70_ECTSI) HSP 1 Score: 322 bits (824), Expect = 6.920e-108 Identity = 191/223 (85.65%), Postives = 196/223 (87.89%), Query Frame = 3
Query: 264 MPKGGRLVFKGGEVAVSSRGKKKDKLXXXXXXXXXXXQAGRTAEGAAGPQQAQEPEREEE----EMRPVSGTGRITSSGTAVHGHEAKFMDELHSGDAILITHPTTLREETRIVKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEDGKRRKMQQEEDSAFGTYAGAGGKRLVYRERTPAGNYRIIERTVDEAMSREEMLDMRATKKADRHCN 920
MPKGGRLVFKGGEVAVSSRGKKKDKLXXXXXXXXXXX T E A EMRPVSGTGRITSSGTAVHGHEAKFMDELHSGDAILITHPTTLREETRI+KMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAE+ K+RK+Q EEDSAFGTYAGAGGKRLVYRERTPAGNYRIIE TVDEAM+REEMLDMRATKKADRHCN
Sbjct: 1 MPKGGRLVFKGGEVAVSSRGKKKDKLXXXXXXXXXXXXXXSTGEAAXXXXXXXXXXXXXXXXXXEMRPVSGTGRITSSGTAVHGHEAKFMDELHSGDAILITHPTTLREETRIIKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEERKKRKVQ-EEDSAFGTYAGAGGKRLVYRERTPAGNYRIIETTVDEAMTREEMLDMRATKKADRHCN 222
BLAST of mRNA_C-linearis_contig80.15898.1 vs. uniprot
Match: A0A835Z5I8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I8_9STRA) HSP 1 Score: 161 bits (408), Expect = 1.890e-45 Identity = 86/160 (53.75%), Postives = 118/160 (73.75%), Query Frame = 3
Query: 444 EMRPVSGTGRITSSGTAVHGHEAKFMDELHSGDAILITHPTTLREETRIVKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEDGKRRKMQQEEDSAFGTYAGAGGKRLVYRERTPA--GNYRIIERTVDEAMSREEMLDMRATKKADRHC 917
E+RPV+GTGRI+SSGT V GH +FM EL +GDA+++THPT+L +ETR+V+MVLS+ +SS FS+DLISTT F+Y+ APR E AE A KR ++Q EED AFGTY+ GG ++VYR + G Y I+ ++M+REE+L++R+ KKADR+C
Sbjct: 33 ELRPVAGTGRISSSGTVVTGHGTRFMSELRAGDALIVTHPTSLAQETRLVRMVLSDAHAGVSSAFSTDLISTTAFQYVSAPRGE--AEDPAVAAKRARLQ-EEDRAFGTYSSGGGSKVVYRVKKAGVYGGYEIVTADSKKSMTREELLNVRSKKKADRYC 189
BLAST of mRNA_C-linearis_contig80.15898.1 vs. uniprot
Match: A0A7S2S051_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S051_9STRA) HSP 1 Score: 158 bits (399), Expect = 1.020e-43 Identity = 120/233 (51.50%), Postives = 150/233 (64.38%), Query Frame = 3
Query: 240 ETSVQEATMPKGGRLVFKGGEVAVSSRGKKKDKLXXXXXXXXXXXQAGRTAEGAAGPQQAQEPEREEEEMRP---VSGTGRITSSGTAVHGHEA-KFMDELHSGDAILITHPTTLREETRIVKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEDGKRRKMQQEEDSAFGTYAGAGGKRLVYRERTPA--GNYRI-IERTVDEAMSREEMLDMRATKKADRHC 917
E +V+E GGRL KGG + +S K K XXXXXXXXXXX E ER+ +E P V+G GRI++SGT VHGHE +FM +L GDA++ITHPTT+ +ETRIVKMVLS++S+SISSPFSSDLIST FR++KAP EV E E+ K++K+ E AFGTYAG G + VYRE+ G Y I +E T D SR ++L+MRA KKADR C
Sbjct: 2 EEAVEEYRRTPGGRLTLKGG-LELSRSKKHKXXXXXXXXXXXXXXXXXXXXE-----------ERQGQEPAPLVIVAGKGRISTSGTTVHGHEGTQFMKQLKHGDAVIITHPTTMMDETRIVKMVLSDVSMSISSPFSSDLISTVEFRFVKAPEEEVDYEA-IENQKKQKLLDTEKEAFGTYAGDLGTKFVYREKKAGAFGGYAIRVEDTADR--SRTDLLEMRAGKKADRFC 219
BLAST of mRNA_C-linearis_contig80.15898.1 vs. uniprot
Match: A0A024UEL5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UEL5_9STRA) HSP 1 Score: 155 bits (392), Expect = 8.720e-43 Identity = 91/160 (56.88%), Postives = 108/160 (67.50%), Query Frame = 3
Query: 456 VSGTGRITSSGTAVHGHEA-KFMDELHSGDAILITHPTTLREETRIVKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEDGKRRKMQQEEDSAFGTYAGA--GGKRLVYRERTPA--GNYRIIERTVDEAMSREEMLDMRATKKADRHCN 920
+ GTGRI +SGT V G KF EL GDA++I HPT+L+EETRIVKMVLS++S+SISSPFSSDL+STT F YIKAP EV + E KR K EE SAFGTYAG G YR + G Y II+ T D SREE+LD+R+ +K DRHCN
Sbjct: 53 LQGTGRILTSGTTVMGKMGTKFFHELSIGDALIINHPTSLKEETRIVKMVLSDVSVSISSPFSSDLVSTTTFWYIKAPPEEVDKDA-VESKKRSKKNDEEASAFGTYAGGTTAGTEFTYRVKKAGVYGGYAIIKETADANRSREELLDIRSKRKGDRHCN 211
BLAST of mRNA_C-linearis_contig80.15898.1 vs. uniprot
Match: A0A7S2D383_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D383_9STRA) HSP 1 Score: 152 bits (383), Expect = 1.200e-41 Identity = 88/157 (56.05%), Postives = 115/157 (73.25%), Query Frame = 3
Query: 459 SGTGRITSSGTAVHGHE-AKFMDELHSGDAILITHPTTLREETRIVKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEDGKRRKMQQEEDSAFGTYAGAGGKRLVYRERTPA--GNYRIIERTVDEA-MSREEMLDMRATKKADRHC 917
+G+GRI++SGT V GH+ ++FMDELH+GDAI++THP +L +ETRI+ MVLSN+S+++SS FSSDLIST++FR++ PR EV T AE KR+K E AFGTYAG G++ VYRER P G Y I EA SR E+L+MR+ KKADR C
Sbjct: 39 TGSGRISTSGTIVTGHDGSRFMDELHNGDAIIVTHPASLIDETRIITMVLSNVSMNMSSAFSSDLISTSDFRFVNQPREEVD-HTIAESRKRQKRVDGEKDAFGTYAGDLGEKFVYRERKPGVYGGYYICSEDNGEAPKSRGELLNMRSKKKADRMC 194
BLAST of mRNA_C-linearis_contig80.15898.1 vs. uniprot
Match: A0A6G0XV17_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV17_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.400e-41 Identity = 92/166 (55.42%), Postives = 113/166 (68.07%), Query Frame = 3
Query: 435 EEEEMRPVSGTGRITSSGTAVHGHEA-KFMDELHSGDAILITHPTTLREETRIVKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEDGKRRKMQQEEDSAFGTYAGAG--GKRLVYRERTPA--GNYRIIERTVDEAMSREEMLDMRATKKADRHC 917
EE ++ + G+GRI +SGT V G +F EL GDA++I HPT+L+EETRIV MVLS++SISISSPFSSDLISTT F YIKAP EV + + E KRRK +QEE AFGTYAG G YR + G Y I++ T D SREE+LD+R+ KK DRHC
Sbjct: 47 EEFQLVKLQGSGRILTSGTTVMGKMGTRFSHELSIGDALIILHPTSLKEETRIVTMVLSDVSISISSPFSSDLISTTTFSYIKAPPEEVDKD-ELETKKRRKNEQEESFAFGTYAGGTTVGTEYTYRVKKSGAYGGYAIVKETADSNRSREELLDIRSKKKGDRHC 211
BLAST of mRNA_C-linearis_contig80.15898.1 vs. uniprot
Match: W4H648_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H648_9STRA) HSP 1 Score: 151 bits (381), Expect = 3.700e-41 Identity = 86/160 (53.75%), Postives = 109/160 (68.12%), Query Frame = 3
Query: 456 VSGTGRITSSGTAVHGHEA-KFMDELHSGDAILITHPTTLREETRIVKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEDGKRRKMQQEEDSAFGTYAG--AGGKRLVYRERTPA--GNYRIIERTVDEAMSREEMLDMRATKKADRHCN 920
+ GTGRI +SGT V G KF EL GDA++I HPT+++EETRIVKMVLS++SISISSPFSSDL+STT F YIKAP E+ + E KR K +EE AFGTYAG + G YR + G Y +++ T D SRE++LD+R+ +K DRHCN
Sbjct: 52 LQGTGRILTSGTTVMGKMGTKFYHELSIGDALIIMHPTSMKEETRIVKMVLSDVSISISSPFSSDLVSTTTFSYIKAPPEEIDQDA-IETKKRSKKNEEETFAFGTYAGGTSAGSEFTYRVKKAGAYGGYAVLKETADANRSREDLLDIRSKRKGDRHCN 210
BLAST of mRNA_C-linearis_contig80.15898.1 vs. uniprot
Match: A0A1V9YA44_9STRA (Niemann-Pick C1 protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YA44_9STRA) HSP 1 Score: 150 bits (379), Expect = 7.790e-41 Identity = 100/225 (44.44%), Postives = 130/225 (57.78%), Query Frame = 3
Query: 261 TMPKGGRLVFKGGEVAVSSRGKKKDKLXXXXXXXXXXXQAGRTAEGAAGPQQAQEPEREEEEMRPVSGTGRITSSGTAVHGHEA-KFMDELHSGDAILITHPTTLREETRIVKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEDGKRRKMQQEEDSAFGTYAGA--GGKRLVYRERTPA--GNYRIIERTVDEAMSREEMLDMRATKKADRHCN 920
T GG+L KG + + KKK R AE A + + E+ E+ V GTGRI +SGT V G +F EL GDA++I HPT+L+EETRIV+MVLS++SISISS FSSDL+STT F YIKAP + + E +++ + EE AFGTYAG G +L YR + G Y II+ T D + SREE+LD+R+ K DRHCN
Sbjct: 5 TKAVGGKLQLKGSLALATKKPKKKX----------------RKAEAAPSDEASAPDHHEDFELVKVQGTGRILTSGTTVMGKMGTRFASELSVGDAMIIVHPTSLQEETRIVRMVLSDVSISISSAFSSDLVSTTTFHYIKAP-PDXXXXAQKELATKKQKKDEEGFAFGTYAGGTTAGSQLTYRVKKSGVYGGYTIIKETADTSRSREELLDLRSKMKGDRHCN 212
BLAST of mRNA_C-linearis_contig80.15898.1 vs. uniprot
Match: A0A485LKB6_9STRA (Aste57867_21986 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LKB6_9STRA) HSP 1 Score: 150 bits (379), Expect = 8.020e-41 Identity = 88/169 (52.07%), Postives = 112/169 (66.27%), Query Frame = 3
Query: 426 PEREEEEMRPVSGTGRITSSGTAVHGHEA-KFMDELHSGDAILITHPTTLREETRIVKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEDGKRRKMQQEEDSAFGTYAGA--GGKRLVYRERTPA--GNYRIIERTVDEAMSREEMLDMRATKKADRHC 917
P EE ++ V GTGRI +SGT V G +F EL GDA++I HPT+L+EETRI+ MVLS++S+SISSPFS+DL+STT F YIKAP+ EV E+ K+RK EE AFGTYAG G YR + G Y I++ T D SRE++LD+R+ KK DRHC
Sbjct: 45 PAEEEFQLVKVQGTGRILTSGTTVMGKMGTRFSHELSIGDALIIVHPTSLKEETRIITMVLSDVSVSISSPFSTDLVSTTTFSYIKAPKEEVDV-ADLENKKKRKKNDEELFAFGTYAGGTTAGTEFTYRVKKAGVYGGYAILKETADSNRSREDLLDIRSKKKGDRHC 212
BLAST of mRNA_C-linearis_contig80.15898.1 vs. uniprot
Match: A0A7S3ZK63_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZK63_9STRA) HSP 1 Score: 143 bits (360), Expect = 5.230e-38 Identity = 81/148 (54.73%), Postives = 106/148 (71.62%), Query Frame = 3
Query: 456 VSGTGRITSSGTAVHGHEA-KFMDELHSGDAILITHPTTLREETRIVKMVLSNMSISISSPFSSDLISTTNFRYIKAPRLEVSAETKAEDGKRRKMQQEEDSAFGTYAGAGGKRLVYRERTP-----AGNYRIIERTVDEAMSREEML 881
+G+GRI+SSGTAV GH+ +FM EL +GDA++ITHPTTL EETRIVKMVLS++SI+ISS FSSDL+STT FRY+ APR+E SA K D +R++ +E D A G YAG GG LVYR R + ++I+ + E +R E+L
Sbjct: 66 AAGSGRISSSGTAVRGHDGTRFMAELRAGDAVVITHPTTLTEETRIVKMVLSDVSIAISSAFSSDLVSTTAFRYVAAPRVEQSAADKERDAAQRRVLRE-DGAVGDYAGGGGTTLVYRTRKKGAVGGSNGWKIVTEKLAEPKTRTELL 212 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig80.15898.1 >prot_C-linearis_contig80.15898.1 ID=prot_C-linearis_contig80.15898.1|Name=mRNA_C-linearis_contig80.15898.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=220bp MPKGGRLVFKGGEVAVSSRGKKKDKLKRKRERAVAKAQAGRTAEGAAGPQback to top mRNA from alignment at C-linearis_contig80:540864..543270- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig80.15898.1 ID=mRNA_C-linearis_contig80.15898.1|Name=mRNA_C-linearis_contig80.15898.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2407bp|location=Sequence derived from alignment at C-linearis_contig80:540864..543270- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig80:540864..543270- >mRNA_C-linearis_contig80.15898.1 ID=mRNA_C-linearis_contig80.15898.1|Name=mRNA_C-linearis_contig80.15898.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1320bp|location=Sequence derived from alignment at C-linearis_contig80:540864..543270- (Chordaria linearis ClinC8C monoicous)back to top |