mRNA_C-linearis_contig80.15892.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15892.1
Unique NamemRNA_C-linearis_contig80.15892.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:488490..488981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size494
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930581.683964-CDS-C-linearis_contig80:488489..4889811622930581.683964-CDS-C-linearis_contig80:488489..488981Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 488490..488981 +
1690881144.0680964-CDS-C-linearis_contig80:488489..4889811690881144.0680964-CDS-C-linearis_contig80:488489..488981Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 488490..488981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15892.1prot_C-linearis_contig80.15892.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 488490..488981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15892.1

>prot_C-linearis_contig80.15892.1 ID=prot_C-linearis_contig80.15892.1|Name=mRNA_C-linearis_contig80.15892.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=164bp
SRCSRAVALAPLTLYRGADTGDEDDDLADGVASPPGVRSASRSECMPVPR
LSTPRAAAASPPSTASWVVRPRAADAAQRGKTESSPPSSLFWSRETSPRA
SDGSIAIASSSSSSSSFGLASTTRSHILATPWFPRALEVRLGPVVVSSKH
SADAREPVVSGIFP
back to top

mRNA from alignment at C-linearis_contig80:488490..488981+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15892.1 ID=mRNA_C-linearis_contig80.15892.1|Name=mRNA_C-linearis_contig80.15892.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=492bp|location=Sequence derived from alignment at C-linearis_contig80:488490..488981+ (Chordaria linearis ClinC8C monoicous)
TCCCGCTGTTCCCGTGCGGTGGCGCTCGCCCCATTGACATTATATCGTGG
CGCCGACACCGGCGACGAAGATGACGACCTTGCGGATGGCGTCGCTTCTC
CTCCGGGCGTGCGGTCCGCTTCAAGAAGTGAGTGCATGCCCGTCCCCCGC
CTATCAACGCCGCGTGCTGCTGCCGCTTCTCCGCCGTCCACCGCTAGCTG
GGTAGTCCGACCGAGAGCCGCAGATGCAGCACAACGAGGAAAGACAGAAA
GCTCACCCCCTTCGTCGCTCTTCTGGTCCCGAGAGACCAGCCCGCGCGCA
TCCGACGGCTCCATTGCCATTGCCTCCTCCTCCTCCTCCTCCTCCTCCTT
CGGGCTTGCTAGCACCACTCGAAGCCATATTCTCGCCACTCCTTGGTTCC
CACGGGCACTCGAGGTTCGGCTCGGGCCGGTAGTGGTCTCTTCCAAGCAC
TCCGCCGATGCGAGAGAACCCGTTGTCTCCGGGATATTCCCC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig80:488490..488981+

>mRNA_C-linearis_contig80.15892.1 ID=mRNA_C-linearis_contig80.15892.1|Name=mRNA_C-linearis_contig80.15892.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=984bp|location=Sequence derived from alignment at C-linearis_contig80:488490..488981+ (Chordaria linearis ClinC8C monoicous)
TCCCGCTGTTCCCGTGCGGTGGCGCTCGCCCCATTGACATTATATCGTGG
CGCCGACACCGGCGACGAAGATGACGACCTTGCGGATGGCGTCGCTTCTC
CTCCGGGCGTGCGGTCCGCTTCAAGAAGTGAGTGCATGCCCGTCCCCCGC
CTATCAACGCCGCGTGCTGCTGCCGCTTCTCCGCCGTCCACCGCTAGCTG
GGTAGTCCGACCGAGAGCCGCAGATGCAGCACAACGAGGAAAGACAGAAA
GCTCACCCCCTTCGTCGCTCTTCTGGTCCCGAGAGACCAGCCCGCGCGCA
TCCGACGGCTCCATTGCCATTGCCTCCTCCTCCTCCTCCTCCTCCTCCTT
CGGGCTTGCTAGCACCACTCGAAGCCATATTCTCGCCACTCCTTGGTTCC
CACGGGCACTCGAGGTTCGGCTCGGGCCGGTAGTGGTCTCTTCCAAGCAC
TCCGCCGATGCGAGAGAACCCGTTGTCTCCGGGATATTCCCCTCCCGCTG
TTCCCGTGCGGTGGCGCTCGCCCCATTGACATTATATCGTGGCGCCGACA
CCGGCGACGAAGATGACGACCTTGCGGATGGCGTCGCTTCTCCTCCGGGC
GTGCGGTCCGCTTCAAGAAGTGAGTGCATGCCCGTCCCCCGCCTATCAAC
GCCGCGTGCTGCTGCCGCTTCTCCGCCGTCCACCGCTAGCTGGGTAGTCC
GACCGAGAGCCGCAGATGCAGCACAACGAGGAAAGACAGAAAGCTCACCC
CCTTCGTCGCTCTTCTGGTCCCGAGAGACCAGCCCGCGCGCATCCGACGG
CTCCATTGCCATTGCCTCCTCCTCCTCCTCCTCCTCCTCCTTCGGGCTTG
CTAGCACCACTCGAAGCCATATTCTCGCCACTCCTTGGTTCCCACGGGCA
CTCGAGGTTCGGCTCGGGCCGGTAGTGGTCTCTTCCAAGCACTCCGCCGA
TGCGAGAGAACCCGTTGTCTCCGGGATATTCCCC
back to top