mRNA_C-linearis_contig80.15888.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15888.1
Unique NamemRNA_C-linearis_contig80.15888.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig80.15888.1 vs. uniprot
Match: D7FV73_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV73_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 7.030e-107
Identity = 163/188 (86.70%), Postives = 175/188 (93.09%), Query Frame = 3 
Query:  213 LLALPTFTRRSMSTGGGGKGGDTAGPPGVIKGFGRRQKPVDSGNTALGKGFDLMEDDPESRKKIVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWKPKRPSEIAVESFRILELVIPKIDLIIIGVGERMTARLDPVLVKHLGSKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLDPEEETILSK 776
            L AL   +RR MS+  GGKG +TAGPPG IKGFGRRQKPVD+GNTALGKGFDLMEDDP+SRKK+VIGGYDPHGFQLGDGVDVRGSMICMPNSFVLW+PKRPS+I VES R++ELVIPKIDLII+GVGERMTARLDPVLVKHL SKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQL PEEE+ILSK
Sbjct:   25 LTALLFCSRRGMSSARGGKGSNTAGPPGTIKGFGRRQKPVDAGNTALGKGFDLMEDDPDSRKKVVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWQPKRPSDITVESLRMVELVIPKIDLIIVGVGERMTARLDPVLVKHLASKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLSPEEESILSK 212
[Close]
BLAST of mRNA_C-linearis_contig80.15888.1 vs. uniprot
Match: A0A7S1UI11_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UI11_9STRA)

HSP 1 Score: 120 bits (300), Expect = 9.210e-28
Identity = 60/137 (43.80%), Postives = 90/137 (65.69%), Query Frame = 3 
Query:  351 LGKGFDLMEDDPESRKKIVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWKPKRPSEIAVESFRILELVIPKIDLIIIGVGERMTARLDPVLVKHLGSKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLDPEEE 761
            +G+G D+M    E   KI + G++  GF +G  ++++ S++ +PNSF LWKP+   EI VES  +  L+ PKI+++IIG GER    L P L+++   KGI VE M T +A +T+NVL +EDR VAAALL + P ++
Sbjct:   43 IGRGHDIMSGVNEGTMKITVDGFEDEGFIIGS-INIKSSVLLLPNSFFLWKPRTVDEITVESLLLPTLITPKIEMLIIGKGERNVEPLAPELLRYFKEKGIVVEHMSTSHALATYNVLTSEDRNVAAALLTIVPTDK 178
[Close]
BLAST of mRNA_C-linearis_contig80.15888.1 vs. uniprot
Match: A0A067CV35_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CV35_SAPPC)

HSP 1 Score: 117 bits (292), Expect = 1.590e-27
Identity = 56/132 (42.42%), Postives = 90/132 (68.18%), Query Frame = 3 
Query:  360 GFDLMEDDPESRKKIVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWKPKRPSEIAVESFRILELVIPKIDLIIIGVGERMTARLDPVLVKHLGSKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLDPE 755
            G D+ ++      K+ I  YD  GF + D V++RGS+  +PN  ++WKP+   EI +ES  +  +  P I+++++G G+R+  +L+P LV++L S GI VE +D+ NAC+TFN+LNAEDR+VAAA+L  +P+
Sbjct:   25 GHDMHKEMMTGTSKVSISEYDDGGFVVND-VNMRGSVALLPNIAMMWKPRSLDEITIESLNVFTVANPPIEILVLGCGKRIAKQLEPSLVEYLKSNGIVVEYLDSFNACATFNILNAEDRKVAAAILVNEPK 155
[Close]
BLAST of mRNA_C-linearis_contig80.15888.1 vs. uniprot
Match: A0A1V9YKK9_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YKK9_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.090e-27
Identity = 58/132 (43.94%), Postives = 89/132 (67.42%), Query Frame = 3 
Query:  360 GFDLMEDDPESRKKIVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWKPKRPSEIAVESFRILELVIPKIDLIIIGVGERMTARLDPVLVKHLGSKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLDPE 755
            G D+ ++      K+ I  YD  GF + D V++RGS+  +P+  ++WKP    EI VES  I  +  P I+++++G G+R+  +LDP LV++L S GI VE +D+ NAC+TFN+LNAEDR+VAAA+L  +P+
Sbjct:   23 GHDMHKEMMTGTSKVSIAEYDDGGFVVND-VNMRGSIALLPSIAMMWKPNTMEEITVESLNIFTVANPPIEILVLGCGKRIARQLDPKLVEYLKSHGIVVEYLDSFNACATFNILNAEDRKVAAAILVNEPK 153
[Close]
BLAST of mRNA_C-linearis_contig80.15888.1 vs. uniprot
Match: K8Z3H4_NANGC (Nadh dehydrogenase (Fragment) n=4 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z3H4_NANGC)

HSP 1 Score: 118 bits (295), Expect = 2.750e-27
Identity = 65/141 (46.10%), Postives = 91/141 (64.54%), Query Frame = 3 
Query:  351 LGKGFDLM---EDDPESRKKIVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWKPKRPSEIAVESFRILELVIPKIDLIIIGVGERMTAR-LDPVLVKHLGSKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLDPEEE 761
            LGKG D++    ++   R++  + GYD  GF++ D V+ RGS++ +P +  LWKPK+  EI  ES   L +V P I+++IIG GE +  R L    +K L + G+ VE MDT +ACSTFN+LN EDRRVAAALL +D   E
Sbjct:   68 LGKGIDVLAVGNEEEAGRERTFLLGYDGQGFEVRD-VNYRGSILALPTACFLWKPKKIEEITPESLAPLLIVKPAIEILIIGTGEEVVGRALALTTLKFLAANGVAVEHMDTTSACSTFNILNQEDRRVAAALLAVDAAAE 207
[Close]
BLAST of mRNA_C-linearis_contig80.15888.1 vs. uniprot
Match: K3X683_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X683_GLOUD)

HSP 1 Score: 113 bits (283), Expect = 3.570e-26
Identity = 59/136 (43.38%), Postives = 84/136 (61.76%), Query Frame = 3 
Query:  360 GFDLMEDDPESRKKIVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWKPKRPSEIAVESFRILELVIPKIDLIIIGVGERMTARLDPVLVKHLGSKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLDPEEETI 767
            G D+ ++      KI +  YD  GF + D V++RG +   P   +LWKPKR  EI  ES  +  +  P I+++++G G R+   LDP + + L   GI VE +D+VNAC+TFN+LNAEDR+VAAA+L  DPE   I
Sbjct:   26 GHDMHKEMLNGTAKISVTDYDEGGFVVND-VNMRGGVALYPEIAMLWKPKRFEEITKESMTVFTVANPPIEILVLGCGARIQFNLDPEIKQFLKENGIVVEYLDSVNACATFNILNAEDRKVAAAILPYDPEASKI 160
[Close]
BLAST of mRNA_C-linearis_contig80.15888.1 vs. uniprot
Match: A0A7S3YDW4_HETAK (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YDW4_HETAK)

HSP 1 Score: 115 bits (287), Expect = 5.020e-26
Identity = 56/135 (41.48%), Postives = 89/135 (65.93%), Query Frame = 3 
Query:  351 LGKGFDLMEDDPESRKKIVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWKPKRPSEIAVESFRILELVIPKIDLIIIGVGERMTARLDPVLVKHLGSKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLDPE 755
            LGKGFD++ D  E + K VI GYD  GF +  GV V G ++  P+ ++LW+P + S +++E+ + + ++ PKI+++++G G  +    D  +      +GI +E M+T+NAC+TFN+L AE R VAAALL +DPE
Sbjct:   60 LGKGFDILADYDEMQSKTVIEGYDSWGFTI-KGVRVEGGVLAFPSHYLLWRPTKFSHLSLEALQPVAIIKPKIEILVLGCGPTIPTLPDREIYTFFKKRGISLEVMNTINACATFNILCAEGRPVAAALLPIDPE 193
[Close]
BLAST of mRNA_C-linearis_contig80.15888.1 vs. uniprot
Match: A0A5D6XPN1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPN1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 9.240e-26
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 3 
Query:  348 ALGKGFDLMEDDPESRKKIVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWKPKRPSEIAVESFRILELVIPKIDLIIIGVGERMTARLDPVLVKHLGSKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLDPE 755
            A+  G DL ++      K+ +  YD  GF + D V++RG +   P   +LWKPKR  EI  ES  +  +  P I+++++G G R+   LDP + + L   GI VE +D+VNAC+TFN+LNAEDR+VAAA+L  DP+
Sbjct:   21 AINYGHDLHKEMLNGTAKLSVTDYDEGGFVVND-VNMRGGVALYPEIAMLWKPKRFEEITKESLTVFTVANPPIEILVLGCGPRIQHHLDPEIKQFLKVNGIVVEYLDSVNACATFNILNAEDRKVAAAILPCDPD 155
[Close]
BLAST of mRNA_C-linearis_contig80.15888.1 vs. uniprot
Match: A0A485LLY5_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLY5_9STRA)

HSP 1 Score: 110 bits (275), Expect = 3.980e-25
Identity = 58/146 (39.73%), Postives = 91/146 (62.33%), Query Frame = 3 
Query:  315 RRQKPVDSGNTALGKGFDLMEDDPESRKKIVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWKPKRPSEIAVESFRILELVIPKIDLIIIGVGERMTARLDPVLVKHLGSKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLDP 752
            RRQ    +G   +  G D+ ++      K+ I  YD  GF + + V++RG++   P   +LWKP+   EI  ES  +  +  P ++++++G G+R+   LDP LV++L S GI VE +D+ NAC+TFN+LNAEDR+VAAA+L + P
Sbjct:    7 RRQLTRPAGVRWINYGHDMHKEMMTGTMKVAITEYDDGGFVVNE-VNLRGAIALFPEIAMLWKPRTMDEITKESLAVFTVANPPVEILVLGCGKRIPRLLDPSLVEYLKSHGIVVEYVDSFNACATFNILNAEDRKVAAAILPVVP 151
[Close]
BLAST of mRNA_C-linearis_contig80.15888.1 vs. uniprot
Match: A0A2D4BWQ8_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWQ8_PYTIN)

HSP 1 Score: 110 bits (274), Expect = 6.150e-25
Identity = 55/135 (40.74%), Postives = 87/135 (64.44%), Query Frame = 3 
Query:  348 ALGKGFDLMEDDPESRKKIVIGGYDPHGFQLGDGVDVRGSMICMPNSFVLWKPKRPSEIAVESFRILELVIPKIDLIIIGVGERMTARLDPVLVKHLGSKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLDP 752
            ++  G D+ ++      KI +  YD  GF + D V++RG +  +P+  +LWKP+R  EI  ES  +  +  P ++++I+G G ++  +LDP + + L   GI VE +D+VNAC+TFN+LNAEDR+VAAA+L  DP
Sbjct:   23 SINYGHDMHKEMLNGTTKISVTEYDEGGFVVND-VNLRGGVALLPDIAMLWKPRRFEEITKESLEVFTIANPPVEILILGCGAKIQHQLDPSIKEFLKVNGIVVEYLDSVNACATFNILNAEDRKVAAAILPWDP 156
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV73_ECTSI7.030e-10786.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1UI11_9STRA9.210e-2843.80Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A067CV35_SAPPC1.590e-2742.42Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9YKK9_9STRA2.090e-2743.94NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
K8Z3H4_NANGC2.750e-2746.10Nadh dehydrogenase (Fragment) n=4 Tax=Monodopsidac... [more]
K3X683_GLOUD3.570e-2643.38Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S3YDW4_HETAK5.020e-2641.48NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A5D6XPN1_9STRA9.240e-2642.65Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A485LLY5_9STRA3.980e-2539.73NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
A0A2D4BWQ8_PYTIN6.150e-2540.74Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:465086..468963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score328.9
Seed ortholog evalue2e-87
Seed eggNOG ortholog2880.D7FV73
Preferred nameNDUFAF3
KEGG rclassRC00002,RC00015
KEGG koko:K00873,ko:K09008,ko:K09228,ko:K14792,ko:K17770
KEGG TC3.A.8.1
KEGG ReactionR00200,R00430,R01138,R01858,R02320
KEGG Pathwayko00010,ko00230,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04714,ko04922,ko04930,ko05165,ko05203,ko05230,map00010,map00230,map00620,map01100,map01110,map01120,map01130,map01200,map01230,map04714,map04922,map04930,map05165,map05203,map05230
KEGG ModuleM00001,M00002,M00049,M00050
Hectar predicted targeting categorymitochondrion
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006996,GO:0007005,GO:0008150,GO:0009987,GO:0010257,GO:0016020,GO:0016043,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032981,GO:0033108,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0065003,GO:0071840
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsKOG3363@1,KOG3363@2759
Ec32 ortholog descriptionNADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3
Ec32 orthologEc-12_007300.1
EC2.7.1.40
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03000,ko03009,ko03029,ko04131,ko04147
Exons5
Model size1364
Cds size756
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930590.5228105-UTR-C-linearis_contig80:465085..4656701622930590.5228105-UTR-C-linearis_contig80:465085..465670Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 465086..465670 -
1690881148.6663728-UTR-C-linearis_contig80:465085..4656701690881148.6663728-UTR-C-linearis_contig80:465085..465670Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 465086..465670 -
1622930590.6497452-UTR-C-linearis_contig80:468940..4689631622930590.6497452-UTR-C-linearis_contig80:468940..468963Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 468941..468963 -
1690881148.746649-UTR-C-linearis_contig80:468940..4689631690881148.746649-UTR-C-linearis_contig80:468940..468963Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 468941..468963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930590.5561352-CDS-C-linearis_contig80:465670..4657751622930590.5561352-CDS-C-linearis_contig80:465670..465775Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 465671..465775 -
1690881148.6848938-CDS-C-linearis_contig80:465670..4657751690881148.6848938-CDS-C-linearis_contig80:465670..465775Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 465671..465775 -
1622930590.5751684-CDS-C-linearis_contig80:466187..4662911622930590.5751684-CDS-C-linearis_contig80:466187..466291Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 466188..466291 -
1690881148.697239-CDS-C-linearis_contig80:466187..4662911690881148.697239-CDS-C-linearis_contig80:466187..466291Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 466188..466291 -
1622930590.5923605-CDS-C-linearis_contig80:467371..4675261622930590.5923605-CDS-C-linearis_contig80:467371..467526Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 467372..467526 -
1690881148.7105718-CDS-C-linearis_contig80:467371..4675261690881148.7105718-CDS-C-linearis_contig80:467371..467526Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 467372..467526 -
1622930590.6096795-CDS-C-linearis_contig80:467940..4681171622930590.6096795-CDS-C-linearis_contig80:467940..468117Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 467941..468117 -
1690881148.721302-CDS-C-linearis_contig80:467940..4681171690881148.721302-CDS-C-linearis_contig80:467940..468117Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 467941..468117 -
1622930590.6286945-CDS-C-linearis_contig80:468725..4689401622930590.6286945-CDS-C-linearis_contig80:468725..468940Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 468726..468940 -
1690881148.7319798-CDS-C-linearis_contig80:468725..4689401690881148.7319798-CDS-C-linearis_contig80:468725..468940Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 468726..468940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15888.1prot_C-linearis_contig80.15888.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 465671..468940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15888.1

>prot_C-linearis_contig80.15888.1 ID=prot_C-linearis_contig80.15888.1|Name=mRNA_C-linearis_contig80.15888.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=252bp
MMTGATARPCARGARLLVRGRDGNAAHIRTGYAASRLASLSSANWVAPST
AAAQARPASPSAGLLALPTFTRRSMSTGGGGKGGDTAGPPGVIKGFGRRQ
KPVDSGNTALGKGFDLMEDDPESRKKIVIGGYDPHGFQLGDGVDVRGSMI
CMPNSFVLWKPKRPSEIAVESFRILELVIPKIDLIIIGVGERMTARLDPV
LVKHLGSKGIRVEQMDTVNACSTFNVLNAEDRRVAAALLQLDPEEETILS
K*
back to top

mRNA from alignment at C-linearis_contig80:465086..468963-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15888.1 ID=mRNA_C-linearis_contig80.15888.1|Name=mRNA_C-linearis_contig80.15888.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3878bp|location=Sequence derived from alignment at C-linearis_contig80:465086..468963- (Chordaria linearis ClinC8C monoicous)
CTCCACCCGTGGCTCCGAGGACAATGATGACTGGAGCGACGGCTAGACCA
TGTGCCAGAGGAGCGCGGTTGCTCGTGCGAGGTCGTGACGGGAATGCGGC
CCATATTCGAACCGGATATGCTGCGTCAAGATTGGCATCATTATCATCAG
CGAACTGGGTAGCACCGTCAACTGCTGCTGCACAGGCGAGGCCTGCCTCC
CCTAGTGCCGGGCTCCTAGCTTTGCCCACGTTTACCAGGTGCGCTTTGGC
TGAACCTATGTGATATCGGTGGGGTTGTTCTATTATCCCTTTTGTGCCAG
CTTGCGGTGGTGACTATCTCTGCGTCTCTGGGCGGCTCTGACTCAAGAAA
GGCGGCGCGATTCCGTTTTGAACAAGGAAATGGTCCTGGTTTGCCACTTG
CCGTCTGCATCTCAATTATCAGTAGAACCTGACTCGTGGTCGAGCCTCTT
ATGGTGGTCGAGCCTGTTATGAGAGTTTAGGGCCGACCTTGGTTCTCGAA
GGGTTGCCAGTGTTTCCGCATACCCATGCCAACTGCACGCAGCTCTCTTA
CCCAGCAGTCACGAACGCTCGTATTGCGTATTGACTTCCGCGACACCTTT
CGTCTTTCATGATCACGAGGAGAGAGAGGGAGACCGCTATTCTGAATGAA
CTGTCTTCTTCAAATATCACTTCGCCCTGCTCTAAGCTTTTAGAAGCAGA
GCCAAACAAGCAGCTCGTACACAGCAGTAGCAGCAGGAGCACCCTACATA
GCCGAATGCATGTTGACGTTTCCATCATCGCCCCGCCCCGCCCCCTCCCC
GCACCTGCTGCCCCCCCTCCCCCCCCCCCGTTCTGATACCTCTTAGGCGC
AGTATGAGCACCGGCGGTGGCGGCAAGGGGGGTGATACTGCTGGGCCGCC
CGGGGTAATCAAAGGCTTCGGGCGAAGACAAAAGCCAGTGGACAGCGGCA
ACACCGCTCTGGGCAAGGGGTTTGACCTGATGGAAGACGATCCAGAGTCG
CGAAAGAAGATCGTCATCGGCGGGTGAGAAAAAGCATACACACATACAGA
GAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAGCCGAAGCGGGAGAGC
ATGGAAAATTTGAAGGGGGGAGATGGTTCTGGTAGATTGGACGGGGGTTG
TGTGATCATAATCGAGGGGTGAGGCATGCCCGTCATGCCCACACCCCACC
TTCGTAACCCCGTGGTTTTATCTCGAGAACGCGTTTCGGCATGAGTAAAT
ATGGTAGTAAATAGAGCAATTTCGTGGGGAAACCAATATCAACACAGACA
AGTTCGCTGCTCTCCAAAGCAAAGAGGCTTGTGTGTGCACTGGACACGAA
TCGACCGGCTGTTTTGTAGGATCTGTCTCTCTGTCTCAGTTCCTGTCTCG
ATACTTACCCGCGGTCTGTTGTCATCTTTTGACACAGATACGACCCGCAC
GGGTTTCAGCTGGGTGATGGCGTGGACGTTCGGGGGTCCATGATCTGCAT
GCCTAACTCGTTCGTGCTTTGGAAGCCGAAACGCCCGTCAGAGATCGCGG
TAGAAAGCTTCCGCATCCTGGAGCTGGTGATCCCCAAAATAGGTACGGTT
AACAAACGCGGAAATTCAAGCACTGTTCTTCTCAAGAATGGCTGTGCAAC
GCTCGTTCGCTTGCTCGAGCACGCACACGAGTATTTTACACTCACAACAT
GTTGAGTGTGTCTACACGTGTTATTCAACACGCCTTGTCTTTCGTTCGTC
CCTCCCTTTTTCTTCTCACGAATACCAAGCGACAGACACTTTTGCAGAAG
ATAAGACACCCCCCAAAAAACTGTACCAGGTACACAATACCAGGCCCTGT
GATACTTTTGTTGGGCACGAAAAAAATGGTCCATTGTCACACCGGTGACA
GAAGACATCACACCCCCGGAAGTTATGTCGCATTTTCACCCTGAAAGACG
GAGTCCCCGCCGAACGCCCGCGGGTTGACTTGCAAGACAGGTGCCCTTTT
TGTTTGCTATGCCTTCTCTTTTATACTCTACCCCTCAAGGACCGCGGCAC
AACGATATGTGGCAGCGTTGACTGAGAGCACGCCTTCGCTCGGCGGCGTA
TAGAACACGCCCTTATTTCACCACAACCCTTCAAGGAGATGTTTCACCAC
GGCATCTGGCAATAGAGATATTACACCCCTTTCAAAGAGTTGCTCTGCAG
CAGCAATCTGTTGGCAACAGAGATATCGCACCCTCTTGAGGTATCACCCC
CCCTCGAATGCGGGCTCCACGACATGCACTTTATCACACCGGTGACATAT
GATAACACACCCCTTACACAATACCACACCCTGTGATAAGTTTTTTAAAA
TGAAGTTTGTTATCACAGGGGTCTGTTATGTTCTGTCACTACGGAGCTTG
TCAATTGGGTTATCATACGATTCTAATTCCCCTGAGCAAAGTGTGCCGTT
TCATACTGCTGTACATCTCGCGCTCGATACTGCTGCATGTCTTCTGAATT
CAGAGAAAACCCTTTCCCCGTGGAAATGCGGCGCTTTCCGCAGAACCGGC
CCCGTTTCACGCCCCGACCCATAGCCTCCGAGCCCACCCTGCAAGCAATT
GCATGGCTGACTGAGCGTTTTGTGTTTGATGCGTTGATGCGGTGTATCTG
TCTATCTCTCTGCTTCGTCCAGATCTCATTATCATAGGCGTCGGCGAGAG
GATGACGGCGAGGCTCGACCCTGTGCTGGTGAAGCACCTCGGTTCCAAGG
GCATCCGGGTAGAGCAGATGGACACGGTAAGTGCCCCGAGGTCACTTGTC
TTGTCTGCGGTAAAGTGGCCGGCAGTTTCTATTGCGACTGGTTTAATCCT
TGTCGTACGATTTTGTACTTTTTTGCTCGAATCGATCAGCTTTGTTTGGG
AGCAACCCGCGTATTTCAGCCCTGAAAGCTCGGCAGCCTGTCCTGTTACT
TGCTGTCTGTCGTGCAGCCTCTATCTATGCATGCGATCTGTTGGGCTCGC
GTCAGAGTCACAGCCATATCAATGAACAGGATTTGTTGGTCTAGTTTGGT
TTGCTTGTTACTTCATATCACGCGTTGTCCAGCGCGAAAGGCCCCCACAC
CGGCAGCACCAACTAGTTTACCCTTATTGGTACTCGCGCTGGTGTGTTGC
ACATACTGCTTGCTGCCTTGATCACTTCCACTGGTCAGGTGAACGCTTGC
TCGACGTTCAACGTGCTGAACGCGGAAGATCGAAGGGTCGCGGCGGCTCT
GCTCCAGCTTGATCCTGAGGAGGAAACCATCCTGTCCAAGTAGTGTGTTT
TCCTGCTGCAGGGTAGTCTTGCAACCTTGTTTTTTTTGTGTGTGTCGGAG
GAGGTCAGAGGTGTTCGTGTACTTCGCGCGTTTCGCCGGTCTCACTAGGT
TTGTTTCAGGATCTTATCTACAGGATAGCTTAGACTCTGTAACGGCGGTG
GTGGTGGACGACTTCTTCGACAATATATTAGCACCCCGGCTGGGGTGTGT
GTGCCCTTGGTGTGGCGTTGTACTTTTATCTCCGGGTAAAGCTGAGAGTT
GCTACATGTAATGCAGGGCGTTGCGCCCCAATGTTTGCCGGCCGCCGTTT
ACGTTTACGTTGCTCGTTCATTTTCGTCTTGTGGGTTTTTTGTATTCCTA
CTTGGTGTGCCGCAAGCAAGACCTTCGTCTTGTGCCCGTTCATTAAAATG
CACACCACATCCAATGAATAGCATTGAAGCAGTAGCCGTAGCTTGGAGAG
AGATTGAGACAAGGATGTGGGGCATGATTCACCCACCGCCCAGCAGGCCC
AATGTGACCGATATTTTTTATGTCTTGAGAAGTTCCACACGAGCAAGTTT
ATTTCCTGTCTGCCTCTCACTGTGTGTG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig80:465086..468963-

>mRNA_C-linearis_contig80.15888.1 ID=mRNA_C-linearis_contig80.15888.1|Name=mRNA_C-linearis_contig80.15888.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at C-linearis_contig80:465086..468963- (Chordaria linearis ClinC8C monoicous)
ATGATGACTGGAGCGACGGCTAGACCATGTGCCAGAGGAGCGCGGTTGCT
CGTGCGAGGTCGTGACGGGAATGCGGCCCATATTCGAACCGGATATGCTG
CGTCAAGATTGGCATCATTATCATCAGCGAACTGGGTAGCACCGTCAACT
GCTGCTGCACAGGCGAGGCCTGCCTCCCCTAGTGCCGGGCTCCTAGCTTT
GCCCACGTTTACCAGATGATGACTGGAGCGACGGCTAGACCATGTGCCAG
AGGAGCGCGGTTGCTCGTGCGAGGTCGTGACGGGAATGCGGCCCATATTC
GAACCGGATATGCTGCGTCAAGATTGGCATCATTATCATCAGCGAACTGG
GTAGCACCGTCAACTGCTGCTGCACAGGCGAGGCCTGCCTCCCCTAGTGC
CGGGCTCCTAGCTTTGCCCACGTTTACCAGGCGCAGTATGAGCACCGGCG
GTGGCGGCAAGGGGGGTGATACTGCTGGGCCGCCCGGGGTAATCAAAGGC
TTCGGGCGAAGACAAAAGCCAGTGGACAGCGGCAACACCGCTCTGGGCAA
GGGGTTTGACCTGATGGAAGACGATCCAGAGTCGCGAAAGAAGATCGTCA
TCGGCGGGCGCAGTATGAGCACCGGCGGTGGCGGCAAGGGGGGTGATACT
GCTGGGCCGCCCGGGGTAATCAAAGGCTTCGGGCGAAGACAAAAGCCAGT
GGACAGCGGCAACACCGCTCTGGGCAAGGGGTTTGACCTGATGGAAGACG
ATCCAGAGTCGCGAAAGAAGATCGTCATCGGCGGATACGACCCGCACGGG
TTTCAGCTGGGTGATGGCGTGGACGTTCGGGGGTCCATGATCTGCATGCC
TAACTCGTTCGTGCTTTGGAAGCCGAAACGCCCGTCAGAGATCGCGGTAG
AAAGCTTCCGCATCCTGGAGCTGGTGATCCCCAAAATAGATACGACCCGC
ACGGGTTTCAGCTGGGTGATGGCGTGGACGTTCGGGGGTCCATGATCTGC
ATGCCTAACTCGTTCGTGCTTTGGAAGCCGAAACGCCCGTCAGAGATCGC
GGTAGAAAGCTTCCGCATCCTGGAGCTGGTGATCCCCAAAATAGATCTCA
TTATCATAGGCGTCGGCGAGAGGATGACGGCGAGGCTCGACCCTGTGCTG
GTGAAGCACCTCGGTTCCAAGGGCATCCGGGTAGAGCAGATGGACACGAT
CTCATTATCATAGGCGTCGGCGAGAGGATGACGGCGAGGCTCGACCCTGT
GCTGGTGAAGCACCTCGGTTCCAAGGGCATCCGGGTAGAGCAGATGGACA
CGGTGAACGCTTGCTCGACGTTCAACGTGCTGAACGCGGAAGATCGAAGG
GTCGCGGCGGCTCTGCTCCAGCTTGATCCTGAGGAGGAAACCATCCTGTC
CAAGTAGGTGAACGCTTGCTCGACGTTCAACGTGCTGAACGCGGAAGATC
GAAGGGTCGCGGCGGCTCTGCTCCAGCTTGATCCTGAGGAGGAAACCATC
CTGTCCAAGTAG
back to top