mRNA_C-linearis_contig80.15885.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig80.15885.1 vs. uniprot
Match: A0A6H5K2V6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2V6_9PHAE) HSP 1 Score: 667 bits (1720), Expect = 1.170e-226 Identity = 426/705 (60.43%), Postives = 473/705 (67.09%), Query Frame = 3
Query: 279 PSNSTPSARFAVDTASGLKARLWVEEVIGRRLPEGDFAAGFKDGVGLCELLNVFKPGTIPKIETSKSPFHQMANISCFLRAIRALGVREQVMFETLDLFNENRLSQVVRCLFSFSELVRTTMPSYRGPYLAAPEKPKADPAVLHLVDLARGNVALAPGWGGPMTPGGFSTVSTGGANTAVGAA-----GGGRALSLSKNHHASDRGSG---CLSPAAHEAGKLTYGIYEGGG---------VPTKPLATSPSVR-------RSGGQXXXXXXXXXXXRSERGETDSAAAETAAEALKEQLQDE-----DLLREERSAGGVGGLAVAAAAVEYAESALPVVNTPRAPPATPRKALKNRGDWRRTLSISTPRRGEDGXXXXXXXKKVLG------------QGSLEEKGRKRREATARSDTEMEVALWIEGVTGETFPGKFWSSLKDGVLLCKLMDSIVPGLIKPGLPHT--SHGTFPELENLSAFLSACRKVGVAEHSLFDPKDLHEKRGMQAVVRCLHVLGAAVQSTVPEFNGPFLGKRSEALSVINARGLRKRLGKGPGARGGIHTINAHKGGAGEHVSPTADFPIEHPDPTATMTPAESPSAKMTSRRRDASDSAAESG--GLHPPVSPRAMAEGLHGALLPAVIMEEEA--GTTSAVVRVERNGRRGARVVEEAGGG---QQNLEGLFASASASAAAPREDG 2243
PS STPSARFA D ++GLKAR WVEEVIGRRLPEGDFAAGFKDG GLCEL+N F+P +IPKIE S SPFHQMANIS FL+A R LGV E V+FETLDLFNENRL QVVRCLFS SELVRTTMPSY GPYL AP+KP+ DPAVLHLVD+A+GNV A G + P G S S+ + G LSL K H D + CLSPAA+EAGKLTYG+YEGGG P KP T + R R+ G RG TD+ + A L + + E S GG GG+ VEYAESAL V NTPR P R + STPR G XXXXXX G S+E++ R+RRE TA+ D EMEVALWIEGVTGETFPGKFWSSLKDGVLLC +++SI PGL+ PH S GTF ELEN+SAFLS CRKVGV EHSLFD KDLHEKR MQ VVRCLHVLGAAVQSTVP+F GPFLGK+SEALS++NARGLRKRLGKGPGARGGIHT+ AHKGGAGE+V + D PIE PDPTATMTPAESPS K SRRR+ASDSA SG P SPRA+AEGL G +LPAVI+EEEA G TSAVVRVER GRRGAR EEAG G +QNL GLFA A A AA PRE G
Sbjct: 20 PSPSTPSARFARDASAGLKARHWVEEVIGRRLPEGDFAAGFKDGQGLCELVNTFRPASIPKIERSASPFHQMANISSFLKACRMLGVSEHVLFETLDLFNENRLPQVVRCLFSLSELVRTTMPSYHGPYLGAPDKPEVDPAVLHLVDIAKGNVVPAAG----VAPAGASATSSCKKGSRXXXXXXXXXAGLEPLSLPK-HDGEDGATSSRRCLSPAAYEAGKLTYGVYEGGGXXXXXXXXXAPAKPPRTPGAARTARLRAARTPGPDDACVVSGAQAAG-RGTTDAQRWQAQEPASAAALGGKRNGGAGAVTREGSEGG-GGV------VEYAESALSVANTPRR--CNPMIMPSPRAE-----GASTPRGEVGGGXXXXXXXXXXGAVASDYYGFGRSSSSVEDQARRRREVTAQHDAEMEVALWIEGVTGETFPGKFWSSLKDGVLLCNVLNSIKPGLV----PHVNPSRGTFLELENISAFLSGCRKVGVPEHSLFDTKDLHEKRDMQVVVRCLHVLGAAVQSTVPDFRGPFLGKKSEALSIVNARGLRKRLGKGPGARGGIHTLTAHKGGAGEYVG-SGDVPIEQPDPTATMTPAESPSGKRASRRREASDSAGGSGVVAAGTPASPRAIAEGLSGGVLPAVILEEEAPAGMTSAVVRVERQGRRGARAAEEAGAGSSGRQNLAGLFADA-ALAADPREGG 698
BLAST of mRNA_C-linearis_contig80.15885.1 vs. uniprot
Match: A0A7R9YD67_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YD67_9STRA) HSP 1 Score: 176 bits (445), Expect = 1.310e-44 Identity = 154/484 (31.82%), Postives = 216/484 (44.63%), Query Frame = 3
Query: 312 VDTASGLKARLWVEEVIGRRLPEGDFAAGFKDGVGLCELLNVFKPGTIPKIETSKSPFHQMANISCFLRAIRALGVREQVMFETLDLFNENRLSQVVRCLFSFSELVRTTMPSYRGPYLAAPEKPKADPAVLHLVDLARGNVALAPGWGGPMTPGGFSTVSTGGANTAVGAAGGGRALSLSKNHHAS-DRGSGCLSPAAHEAGKLTYGIYEGGGVPT--KPLATSPSVRRSGGQXXXXXXXXXXXRSERGETDSAAAETAAEALK------EQLQDEDLLREERSAGGVGGLAVAAAAVEYAESALPVVNTPRAPPATPRKALKNRGDWRRTLSISTPRRGEDGXXXXXXXKKVLGQGSLEEKGRKRREATARSDTEMEVALWIEGVTGETFPGKFWSSLKDGVLLCKLMDSIVPGLIKPGLPHTSHGTFPELENLSAFLSACRKVGVAEHSLFDPKDLHEKRGMQAVVRCLHVLGAAVQSTVP 1736
+D + A+ W+E V G GDF KDG LC L+N + G++ KI SK PF QM NIS FLRA R LGV E +FET+DLF LS VV+C+++ V+TT+P + GP+L PE + + D AR P + T G FS G A ++ K + D SG + A + ++ G+ K + + P++ R+E T+S AA K E + + + VGGL ++AE++ RA P G + ++ R + D E EV WIE VTGE FPG F SLKDG +LCKL+++I PG I+ + +TS F ++EN+S FL CR +GVAEH LF+ DL+E + + VV C+H LG AVQ TVP
Sbjct: 10 IDPEAMQDAQEWIEAVTGVAFA-GDFGESLKDGQMLCMLVNAIRRGSVRKINESKLPFKQMENISNFLRACRTLGVAEHDVFETVDLFELKDLSVVVKCIWALGRAVQTTVPEFEGPHLGVPETTRTTLSRPSNFDAAR------PSFTSMATLGRFSM---------------GSAATMQKQENRYWDATSGNRTVGAGDTSVVSKLQSGSSGIMERKKIVVSGPTLGADAAAG----------RAEA--TNSPAASPRLAPPKPPRLGGEYINSDTAKTAALAPPSVGGLE------QFAETSY----RQRAHTEPPAPVSARGGGYGLDAQLAQIRLDKYDY-----------------------------DLEAEVKEWIEAVTGEAFPGGFGESLKDGRILCKLINAIKPGSIR--IINTSKLPFKQMENVSVFLRNCRALGVAEHDLFETVDLYELKDLGVVVNCIHALGGAVQKTVP 418
BLAST of mRNA_C-linearis_contig80.15885.1 vs. uniprot
Match: A0A7S4RUD9_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RUD9_9DINO) HSP 1 Score: 128 bits (321), Expect = 4.520e-27 Identity = 128/486 (26.34%), Postives = 186/486 (38.27%), Query Frame = 3
Query: 345 WVEEVIGRRLPEGDFAAGFKDGVGLCELLNVFKPGTIPKIETSKSPFHQMANISCFLRAIRALGVREQVMFETLDLFNENRLSQVVRCLFSFSELVRTTMPSYRGPYLAAPEKPKADPAVLHLVDLARGNVALAPGWGGPMTPGGFSTVSTGGANTAVGAAGGGRALSLSKNHHASDRGSGCLSPAAHEAGKLTYGIYEGGGVPT-KPLATSPSVRRSGGQXXXXXXXXXXXRSERGETDSAAAETAAEALKEQLQDEDLLREERSAGGVGGLAVAAAAVEYAESALPVVNTPRAPPATPRKALKNRGDWRRTLSISTPRRGEDGXXXXXXXKKVLGQGSLEEKGRKRREATARSDTEMEVALWIEGVTGETFPGKFWSS-LKDGVLLCKLMDSIVPGLIKPGLPHTSHGTFPELENLSAFLSACRKVGVAEHSLFDPKDLHEKRGMQAVVRCLHVLGAAVQSTVPEFNGPFLGKRSEALSVINAR 1796
WVE V G R F +DG LC L N +PG P+I + PF QM N++ F++A R LGV E+ +F T+DL+ + L V C+++ +RT+ PS++GPYL + + D+AR + G N V RA + D G G + A GG P+ KP S A A + + AAA+ Y A PPA KA + G A S E EV W+E V+GE PG+ L G +LCK+ + + PG+ P + +T F ++EN++AF+ ACRK+GV E +F DL+EK+ M+A +C++ L + V+ST P F GP+LG + AR
Sbjct: 27 WVETVSGERRGGLAFGEWLRDGQVLCRLANKIEPGICPRINSQAMPFKQMENVTAFIQACRKLGVLEKDVFSTVDLYEQKNLKAVNLCIYNLGSAIRTSAPSFQGPYLGVAQTGG-------VTDVARKRQTVTQDMGFRQD-----------INVEV------RAGARKSRIAGDDMGEGFAADA-------------GGSAPSAKPRP------------------------------SQLAAPAPPSSRXXXXXXXXXXXXXXXXXXXXXXXAAASEGYPSGACST------PPAA--KAAPSGGP-------------------------------------------AASGLEAEVRGWLEQVSGERQPGEDLGDWLHSGQVLCKVANVLEPGIC-PRI-NTVDMPFKQMENITAFIQACRKLGVLEKDVFSTVDLYEKKNMKAFCQCIYSLASVVRSTAPAFKGPYLGVAQNSAVTDVAR 392
BLAST of mRNA_C-linearis_contig80.15885.1 vs. uniprot
Match: A0A836CGB8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGB8_9STRA) HSP 1 Score: 120 bits (300), Expect = 5.390e-27 Identity = 62/129 (48.06%), Postives = 88/129 (68.22%), Query Frame = 3
Query: 1386 REATARSDTEMEVAL--WIEGVTGETFPGKFWSSLKDGVLLCKLMDSIVPGLIKPGLPHTSHGTFPELENLSAFLSACRKVGVAEHSLFDPKDLHEKRGMQAVVRCLHVLGAAVQSTVPEFNGPFLGKR 1766
R+A A D E A WIE VT F G F ++LKDG +LCKL+++I PG +K +TS F ++EN+SA+L CR +GVAEHSLF+ DL+E++ + V++CL LG+ +QS+VPEF+GP LG +
Sbjct: 17 RKAAANYDYAGEHAAQEWIEAVTRVKFEGTFAAALKDGSVLCKLLNAIRPGTVKK--INTSSMPFKQMENISAYLKGCRALGVAEHSLFETVDLYEEKDISLVIKCLFALGSTIQSSVPEFHGPHLGAK 143
BLAST of mRNA_C-linearis_contig80.15885.1 vs. uniprot
Match: A0A835ZHQ8_9STRA (Calponin homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHQ8_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.410e-26 Identity = 65/127 (51.18%), Postives = 86/127 (67.72%), Query Frame = 3
Query: 1392 ATARSDTEMEVAL--WIEGVTGETFPGKFWSSLKDGVLLCKLMDSIVPGLIKPGLPHTSHGTFPELENLSAFLSACRKVGVAEHSLFDPKDLHEKRGMQAVVRCLHVLGAAVQSTVPEFNGPFLGKR 1766
A A+ D E E W+E VTG F G F SSLKDG LLC+L+++I PG IK ++S F ++EN+S FL ACR +GVAE+SLF+ DL E++ + V+RCL LG+AVQS+ PEF GP LG +
Sbjct: 18 AAAKYDFEGERTAQEWMEAVTGVKFEGSFASSLKDGTLLCQLINAIKPGTIKR--INSSKMPFKQMENISNFLKACRTLGVAEYSLFETVDLFEEKDVGLVIRCLFALGSAVQSSTPEFAGPHLGAK 142
BLAST of mRNA_C-linearis_contig80.15885.1 vs. uniprot
Match: F0X2A4_9STRA (Uncharacterized protein AlNc14C928G12640 n=2 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X2A4_9STRA) HSP 1 Score: 123 bits (309), Expect = 3.550e-26 Identity = 62/120 (51.67%), Postives = 82/120 (68.33%), Query Frame = 3
Query: 1407 DTEMEVALWIEGVTGETFPGKFWSSLKDGVLLCKLMDSIVPGLIKPGLPHTSHGTFPELENLSAFLSACRKVGVAEHSLFDPKDLHEKRGMQAVVRCLHVLGAAVQSTVPEFNGPFLGKR 1766
D++ E WIE VTGE F F ++LKDGVLLC LM+ IVPGLI P + + S+ F ++EN+S F+ ACRK+GVAE LF+ DL E + + V+ C+H LG +Q T+PEF GP LG R
Sbjct: 252 DSKTEAQSWIETVTGEKFKDDFETTLKDGVLLCTLMNKIVPGLI-PKIENASN-PFKKMENISHFIKACRKLGVAEFDLFETIDLSESKNISLVINCIHALGRTIQKTMPEFIGPTLGVR 369
BLAST of mRNA_C-linearis_contig80.15885.1 vs. uniprot
Match: A0A0W8CZ75_PHYNI (Luc7 protein 3 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8CZ75_PHYNI) HSP 1 Score: 123 bits (308), Expect = 7.650e-26 Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 3
Query: 1413 EMEVALWIEGVTGETFPGKFWSSLKDGVLLCKLMDSIVPGLIKPGLPHTSHGTFPELENLSAFLSACRKVGVAEHSLFDPKDLHEKRGMQAVVRCLHVLGAAVQSTVPEFNGPFLGKRSEALSVINAR 1796
E E WIE V GE F F SLKDGV+LC LM+ I PGLI P + TS F ++EN+SAF+ ACR +GVAE LF+ DL+ ++ + VV+C+H LG +Q T+PE+NGP LG + S +N R
Sbjct: 292 EEEAQEWIEAVLGEKFLASFGDSLKDGVMLCSLMNKIKPGLI-PRI-QTSSMPFKQMENVSAFVRACRSIGVAEFDLFETVDLYNQKNLGQVVQCIHALGRTIQKTMPEYNGPLLGVKE---STVNPR 414
BLAST of mRNA_C-linearis_contig80.15885.1 vs. uniprot
Match: A0A024G6R3_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6R3_9STRA) HSP 1 Score: 122 bits (306), Expect = 8.580e-26 Identity = 59/120 (49.17%), Postives = 78/120 (65.00%), Query Frame = 3
Query: 1407 DTEMEVALWIEGVTGETFPGKFWSSLKDGVLLCKLMDSIVPGLIKPGLPHTSHGTFPELENLSAFLSACRKVGVAEHSLFDPKDLHEKRGMQAVVRCLHVLGAAVQSTVPEFNGPFLGKR 1766
D+ ME +WIE VTGE F F ++LKDGVLLC LM++IVPG+I + F ++EN+S F+ ACRK+GVAE LF+ DL + + + VV C+H LG +Q PEF GP LG R
Sbjct: 252 DSTMEAQIWIETVTGEKFKDDFETTLKDGVLLCTLMNTIVPGMISK--IEQASNPFKKMENISHFIKACRKLGVAEFDLFETIDLSDSKNISLVVNCIHALGRVIQKNYPEFKGPILGVR 369
BLAST of mRNA_C-linearis_contig80.15885.1 vs. uniprot
Match: A0A814CUG7_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A814CUG7_ADIRI) HSP 1 Score: 122 bits (307), Expect = 9.280e-26 Identity = 134/501 (26.75%), Postives = 202/501 (40.32%), Query Frame = 3
Query: 333 KARLWVEEVIGRRLPEGDFAAGFKDGVGLCELLNVFKPGTIPKIETSKSPFHQMANISCFLRAIRALGVREQVMFETLDLFNENRLSQVVRCLFSFSELVRTTMPSYRGPYLAAPEKPKADPAVLHLVDLARGNVALAPGWGGPMTPGGFSTVSTGGANTAVGAAGGGRALS---LSKNHHASDRGSGCLSPAAHEAGKLTYGIYEGGGVPTKPLATSPSVRRSGGQXXXXXXXXXXXRSERGETDSAAAETAAEALKEQLQDEDLLREERSAGGVGGLAVAAAAVEYAESALPVVNTPRAPPATPRKALKNRGDWRRTLSISTPRRGED--GXXXXXXXKKVLGQGSLEE-----------KGRKRREATARSDTEMEVALWIEGVTGETFP-GKFWSSLKDGVLLCKLMDSIVPGLIKPGLPHTSHGTFPELENLSAFLSACRKVGVAEHSLFDPKDLHEKRGMQAVVRCLHVLGAAVQSTVPEFNGPFLGKRSEALSV 1784
+A+ W+E VIG + P G + KDGV LC+L+N +PG IPK TS F NIS F A RA G+ + +F+T+DLF ++ + QV +C+F+ + + GP L P+ + L G L G + G + G RA+S L++ S R +G PA E + + E + + R S + + S +++T + Q ++D ++ + LA R +R D + L S ED G + + S E+ G KR + + E WIE V GE FP G + +LKDG++LCKL++ + PG + T G F EN+SAF +A R G+ + LF DL EKR + V +C+H LG Q FNGP LG + +V
Sbjct: 29 EAQEWIEAVIGEKFPSGSYEDALKDGVILCKLMNKLQPGAIPKYATSGGSFKLRENISLFQNAARAYGLGDAELFQTIDLFEKHNIPQVTQCIFALGRNAQKK--KFNGPTLG-PKMSDVNVREFSEDQLRAGQATL-----GLLNEG-----------MSKGTIEDPRAVSDQLLAEKMQMSLRSTG--RPARSETASASSEMSESSVLFNDYTRSHGGRRLSQRKLSNSSVTNLLINLQNIRIPSTSSQTYLDNQHHQGDEDDESDDDNHLQTLIDLA--------------------------RDTESSRSDKLQRLHASL----EDSIGIVELLSLLRFIKSPSSEDILYTVRLIVSMSGGKR-----NPELDKEAQQWIEAVIGEKFPSGSYDDALKDGIILCKLINKLQPGSVAKIC--TQGGGFKLRENVSAFQNAARAYGLPDAELFQTVDLFEKRNIAQVTQCIHALGRQAQRK--NFNGPSLGPKMADANV 469
BLAST of mRNA_C-linearis_contig80.15885.1 vs. uniprot
Match: W2NFZ0_PHYPR (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2NFZ0_PHYPR) HSP 1 Score: 123 bits (308), Expect = 1.170e-25 Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 3
Query: 1413 EMEVALWIEGVTGETFPGKFWSSLKDGVLLCKLMDSIVPGLIKPGLPHTSHGTFPELENLSAFLSACRKVGVAEHSLFDPKDLHEKRGMQAVVRCLHVLGAAVQSTVPEFNGPFLGKRSEALSVINAR 1796
E E WIE V GE F F SLKDGV+LC LM+ I PGLI P + TS F ++EN+SAF+ ACR +GVAE LF+ DL+ ++ + VV+C+H LG +Q T+PE+NGP LG + S +N R
Sbjct: 292 EEEAQEWIEAVLGEKFLASFGDSLKDGVMLCSLMNKIKPGLI-PRI-QTSSMPFKQMENVSAFVRACRSIGVAEFDLFETVDLYNQKNLGQVVQCIHALGRTIQKTMPEYNGPLLGVKE---STVNPR 414 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig80.15885.1 >prot_C-linearis_contig80.15885.1 ID=prot_C-linearis_contig80.15885.1|Name=mRNA_C-linearis_contig80.15885.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=692bp MVSTLHSPTAAWDASMSITMLASPSNSTPSARFAVDTASGLKARLWVEEVback to top mRNA from alignment at C-linearis_contig80:437711..442324- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig80.15885.1 ID=mRNA_C-linearis_contig80.15885.1|Name=mRNA_C-linearis_contig80.15885.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4614bp|location=Sequence derived from alignment at C-linearis_contig80:437711..442324- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig80:437711..442324- >mRNA_C-linearis_contig80.15885.1 ID=mRNA_C-linearis_contig80.15885.1|Name=mRNA_C-linearis_contig80.15885.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4152bp|location=Sequence derived from alignment at C-linearis_contig80:437711..442324- (Chordaria linearis ClinC8C monoicous)back to top |