mRNA_C-linearis_contig80.15884.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15884.1
Unique NamemRNA_C-linearis_contig80.15884.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:433815..434372 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size558
Cds size327
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930581.6245584-UTR-C-linearis_contig80:433814..4340451622930581.6245584-UTR-C-linearis_contig80:433814..434045Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 433815..434045 +
1690881144.036957-UTR-C-linearis_contig80:433814..4340451690881144.036957-UTR-C-linearis_contig80:433814..434045Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 433815..434045 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930581.640757-CDS-C-linearis_contig80:434045..4343721622930581.640757-CDS-C-linearis_contig80:434045..434372Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 434046..434372 +
1690881144.05696-CDS-C-linearis_contig80:434045..4343721690881144.05696-CDS-C-linearis_contig80:434045..434372Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 434046..434372 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15884.1prot_C-linearis_contig80.15884.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 434046..434372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15884.1

>prot_C-linearis_contig80.15884.1 ID=prot_C-linearis_contig80.15884.1|Name=mRNA_C-linearis_contig80.15884.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=109bp
MMRAFLQLLLIKTFRERLSPKHHGRDPPPPHVCDPCLVRVRNALPRVTLG
KKKIRRLHSIDLGHRGWDLTTTPVKGPCPTHISLNIGQRTLGDSRQPIPG
IWGWGSIVR
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mRNA from alignment at C-linearis_contig80:433815..434372+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15884.1 ID=mRNA_C-linearis_contig80.15884.1|Name=mRNA_C-linearis_contig80.15884.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=558bp|location=Sequence derived from alignment at C-linearis_contig80:433815..434372+ (Chordaria linearis ClinC8C monoicous)
CGGTACTACGTGGTAAGCATATCGTGCTGCTAAAATGGAGTGCGATTGGC
GGCGACAAAACTATGAAATTCAACGGGCTAGACGTAGCCTGTGTCTACCA
TTGGACTACCTGCGGACGTGGTGGGGGCTGGGGGCCCGGGGGGATAAGTG
TGTACCCCAATTACGAGTATTAGTGTGGTCATCCATTCGACATCTTCTTT
ATTTTTACAAGCATACCGTTCAGGGTAACGGATGATGCGCGCATTTCTTC
AACTTTTGCTGATAAAAACATTTAGAGAACGCCTCAGCCCCAAGCACCAT
GGACGAGACCCCCCCCCACCCCACGTGTGTGATCCGTGTTTAGTGAGGGT
GCGCAATGCCTTACCACGAGTCACGTTGGGCAAGAAAAAAATTCGGAGGC
TGCACAGCATCGACCTGGGACACCGAGGTTGGGATCTCACGACAACGCCT
GTGAAGGGACCTTGCCCAACACATATTTCGCTGAACATTGGGCAACGAAC
ACTAGGCGATAGTAGACAACCGATTCCGGGAATTTGGGGTTGGGGCAGCA
TTGTGCGG
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Coding sequence (CDS) from alignment at C-linearis_contig80:433815..434372+

>mRNA_C-linearis_contig80.15884.1 ID=mRNA_C-linearis_contig80.15884.1|Name=mRNA_C-linearis_contig80.15884.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at C-linearis_contig80:433815..434372+ (Chordaria linearis ClinC8C monoicous)
ATGATGCGCGCATTTCTTCAACTTTTGCTGATAAAAACATTTAGAGAACG
CCTCAGCCCCAAGCACCATGGACGAGACCCCCCCCCACCCCACGTGTGTG
ATCCGTGTTTAGTGAGGGTGCGCAATGCCTTACCACGAGTCACGTTGGGC
AAGAAAAAAATTCGGAGGCTGCACAGCATCGACCTGGGACACCGAGGTTG
GGATCTCACGACAACGCCTGTGAAGGGACCTTGCCCAACACATATTTCGC
TGAACATTGGGCAACGAACACTAGGCGATAGTAGACAACCGATTCCGGGA
ATTTGGGGTTGGGGCAGCATTGTGCGGATGATGCGCGCATTTCTTCAACT
TTTGCTGATAAAAACATTTAGAGAACGCCTCAGCCCCAAGCACCATGGAC
GAGACCCCCCCCCACCCCACGTGTGTGATCCGTGTTTAGTGAGGGTGCGC
AATGCCTTACCACGAGTCACGTTGGGCAAGAAAAAAATTCGGAGGCTGCA
CAGCATCGACCTGGGACACCGAGGTTGGGATCTCACGACAACGCCTGTGA
AGGGACCTTGCCCAACACATATTTCGCTGAACATTGGGCAACGAACACTA
GGCGATAGTAGACAACCGATTCCGGGAATTTGGGGTTGGGGCAGCATTGT
GCGG
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