mRNA_C-linearis_contig80.15880.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig80.15880.1 vs. uniprot
Match: D7G044_ECTSI (Fatty acid desaturase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G044_ECTSI) HSP 1 Score: 390 bits (1003), Expect = 2.090e-117 Identity = 181/199 (90.95%), Postives = 189/199 (94.97%), Query Frame = -3
Query: 4026 WPAYLMFGATGGPVRGMTSHFFPHKPFSTGEQGTDLYPGQWKKKVWYSNVGVGAMIAGLAAWASKAGTAQVAALYGGPLMVVNAWLVLITWLQHTEVDIPHFEAENWNFIKGALHTVDRPYGKVLDLLHHRIGSTHVAHHVDSTIPHYHALEATNAIKAAFPQHYLYEPTPLPQATWRLATQCAGVEKRGDMHVFVTKE 4622
WPAYL+FGATGGP RGMTSHFFPH PFSTGE+GTDLYPG+WKKKVW S+VGV MIAGLAAWASKAG QVAALYGGPLMVVNAWLVLITWLQHTEVD+PHFEA+NWNFIKGALHTVDRPYGKVLD LHHRIGSTHVAHHVD TIPHYHALEATNAIK AFP+HYLY+PTPLPQATWRLATQCAGVEKRGDMHVFVTKE
Sbjct: 263 WPAYLLFGATGGPSRGMTSHFFPHPPFSTGEKGTDLYPGKWKKKVWLSDVGVAGMIAGLAAWASKAGAMQVAALYGGPLMVVNAWLVLITWLQHTEVDVPHFEADNWNFIKGALHTVDRPYGKVLDFLHHRIGSTHVAHHVDCTIPHYHALEATNAIKEAFPEHYLYDPTPLPQATWRLATQCAGVEKRGDMHVFVTKE 461
BLAST of mRNA_C-linearis_contig80.15880.1 vs. uniprot
Match: D7G045_ECTSI (Similar to fidipidine n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G045_ECTSI) HSP 1 Score: 355 bits (911), Expect = 5.580e-106 Identity = 264/401 (65.84%), Postives = 301/401 (75.06%), Query Frame = 3
Query: 543 MKEEAEEARDYGKKLAQEMVRLERVARTLPPDVAPSLEKLRRLVATLTEVKLQEQAALEEGRAREAALRAEIEEFTSGTG---GDGGQPAPXSTAVVDXXXXXXXXXXXXXXXEGSVQAISSTNGTGGVVLEKSVDDPLAAMAESXXXXXXXXXXXXGRAAXXXXXXXXXXXXTSGVISVPRTTVVSGTSDGDNSSSSSGGPRGKKPALEGKALLAEGLHRIEASYQAAGVEREQTASRLSRLRLAVARRQREEDAAPGHAELLQYLLRFEELGRHAMERREQLRRCQAERSTLALTRELLAKQARLLETIAGGVEEASQGGKPAREAYMRQITEIIEGVEHSLQNQKCLLDEARSRRQTAEKVQASLKDDRKRFLAGTKELADECYKHEALTAHLALMRR 1736
M+EEAE+ARDYG KLAQEM RL R+ RTL PD + SLEKLRRLVATLTE++ QEQAALE+G+AREAALRAEI EFT T G GG A V XXXXXXXXXXXXXXX VLEK+VDDPLA XXXXXXXXXXXX XXXXXXXXXXXX + ++ KKPALEGKAL AEGLHRIEA+Y+ A ERE++A+RLSRLRLAVARRQREED A GHAELLQYLLRFEELG+H++ER+EQLRRC+AERSTL+LTRELLA QARLLETIAGGVEEAS+GGK REAY+RQI I+E VE SL++Q LLD R RR AE++QAS+++DRKRF AGTKEL+DECY++E+L AHLALMRR
Sbjct: 1 MEEEAEQARDYGNKLAQEMARLGRITRTLAPDESASLEKLRRLVATLTEIERQEQAALEQGKAREAALRAEIAEFTGETTEDVGGGGDGLGEKPAAVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVLEKTVDDPLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAERKAN-----HRKKPALEGKALFAEGLHRIEAAYEVAAAEREESAARLSRLRLAVARRQREEDVALGHAELLQYLLRFEELGQHSLERQEQLRRCRAERSTLSLTRELLATQARLLETIAGGVEEASKGGKGVREAYLRQIKGIVESVEDSLEDQTRLLDNVRRRRHVAEELQASVREDRKRFFAGTKELSDECYRYESLNAHLALMRR 396
BLAST of mRNA_C-linearis_contig80.15880.1 vs. uniprot
Match: A0A6H5JTA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTA4_9PHAE) HSP 1 Score: 349 bits (895), Expect = 4.590e-104 Identity = 239/381 (62.73%), Postives = 265/381 (69.55%), Query Frame = 3
Query: 426 MQQERHAEALSLRKRGAELEELLVAARSRRTSARERREFMKEEAEEARDYGKKLAQEMVRLERVARTLPPDVAPSLEKLRRLVATLTEVKLQEQAALEEGRAREAALRAEIEEFTSGTGGDGGQPAPXSTAVVDXXXXXXXXXXXXXXX----EGSVQAISSTNGTGGVVLEKSVDDPLAAMAESXXXXXXXXXXXXGRAAXXXXXXXXXXXXTSGVISVPRTTVVSGTSDGDNSSSSSGGPRG---KKPALEGKALLAEGLHRIEASYQAAGVEREQTASRLSRLRLAVARRQREEDAAPGHAELLQYLLRFEELGRHAMERREQLRRCQAERSTLALTRELLAKQARLLETIAGGVEEASQGGKPAREAYMRQITEIIE 1547
MQQ+R AE LSLR+RGAELEE L AAR TSARERREFM+EEAE+ARDYG KLAQEM RL R+ RTLPPD + SLEKLRRLVATLTE++ QEQAALE+G+AREAALR EI EFT T GDG X XXXXXXX EG +A G GG VLEK+VDDPLAAMAE G +SV RT VV G R KKPALEGKAL AEGLHRIEA+Y+ A ERE++A+RLSRLRLAVARRQREEDAA GHAELLQYLLRFEELG+H++ER+EQLRRC+AER L+LTRELLAKQARLLETIAGGVEEAS GGK REAY+RQI I+E
Sbjct: 1 MQQQRQAEVLSLRERGAELEERLQAARIALTSARERREFMEEEAEQARDYGDKLAQEMARLGRITRTLPPDESASLEKLRRLVATLTEIERQEQAALEQGKAREAALRTEIAEFTGETTGDGXXXXXXXXXXXXXXXXXXXDAAPATAGAPAGEGGGRAGKGREG-GGFVLEKAVDDPLAAMAEPQEHQEEDKSGAGNIVGAVPAAGV-------GTVSVLRTAVVLGXXXXXXXXXXXPAERANHRKKPALEGKALFAEGLHRIEAAYEVAVAEREESAARLSRLRLAVARRQREEDAALGHAELLQYLLRFEELGQHSLERQEQLRRCRAERLMLSLTRELLAKQARLLETIAGGVEEASTGGKGVREAYLRQIKGIVE 373
BLAST of mRNA_C-linearis_contig80.15880.1 vs. uniprot
Match: A0A7S2V1H8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1H8_9STRA) HSP 1 Score: 305 bits (781), Expect = 9.390e-88 Identity = 135/195 (69.23%), Postives = 162/195 (83.08%), Query Frame = -3
Query: 4038 WPAYLMFGATGGPVRGMTSHFFPHKPFSTGEQGTDLYPGQWKKKVWYSNVGVGAMIAGLAAWASKAGTAQVAALYGGPLMVVNAWLVLITWLQHTEVDIPHFEAENWNFIKGALHTVDRPYGKVLDLLHHRIGSTHVAHHVDSTIPHYHALEATNAIKAAFPQHYLYEPTPLPQATWRLATQCAGVEKRGDMHVF 4622
WPAYL+ GATGGP RGMT+HF+P KPFSTGE+ T+L+PG WK KVW S+VG+ AM+ L WASKAG VAALYGGP +VVN WLVL TWLQHT+VD+PH+EAE+WN++KGA T+DRPYG+VLD LHH IGSTHV HH+D TIPHYHALEAT A++ AFP+HYLYEPTP+ QA WR++T+C V+K GD VF
Sbjct: 260 WPAYLLAGATGGPDRGMTNHFWPLKPFSTGEKTTELFPGAWKNKVWLSDVGIVAMLGALGLWASKAGALTVAALYGGPYLVVNCWLVLYTWLQHTDVDVPHYEAEDWNYMKGAFQTIDRPYGRVLDFLHHHIGSTHVVHHIDCTIPHYHALEATKAVEKAFPEHYLYEPTPIAQALWRVSTKCLTVDKVGDKWVF 454
BLAST of mRNA_C-linearis_contig80.15880.1 vs. uniprot
Match: A0A6T7WAC3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A6T7WAC3_9CRYP) HSP 1 Score: 288 bits (738), Expect = 6.100e-84 Identity = 133/196 (67.86%), Postives = 156/196 (79.59%), Query Frame = -3
Query: 4035 WPAYLMFGATGGPVRGMTSHFFPHKPFSTGEQGTDLYPGQWKKKVWYSNVGVGAMIAGLAAWASKAGTAQVAALYGGPLMVVNAWLVLITWLQHTEVDIPHFEAENWNFIKGALHTVDRPYGKVLDLLHHRIGSTHVAHHVDSTIPHYHALEATNAIKAAFPQHYLYEPTPLPQATWRLATQCAGVEKRGDMHVFV 4622
WPAYLM G+TGGP RGMT+HF+P KPFSTG++ T+L+PG WKKKVW S++G+ AM LAAWAS G +AALY GPL N WLVL TWLQHT+VD+PHFEAE++NFIKGA ++DRPYG V D LHHRIGSTHV HH+D TIPHYHALEAT A++ AFP YLY+PTPL A WR+A C VEKRGD +VFV
Sbjct: 121 WPAYLMIGSTGGPTRGMTNHFWPIKPFSTGDKNTELFPGVWKKKVWISDIGILAMAGLLAAWASAFGFWHMAALYLGPLAFTNCWLVLYTWLQHTDVDVPHFEAEDFNFIKGAFMSIDRPYGPVFDFLHHRIGSTHVVHHIDCTIPHYHALEATKAVQKAFPGCYLYDPTPLLPAMWRVARDCIAVEKRGDKYVFV 316
BLAST of mRNA_C-linearis_contig80.15880.1 vs. uniprot
Match: A0A7S0TTZ8_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A7S0TTZ8_HEMAN) HSP 1 Score: 288 bits (737), Expect = 1.370e-81 Identity = 126/199 (63.32%), Postives = 159/199 (79.90%), Query Frame = -3
Query: 4026 WPAYLMFGATGGPVRGMTSHFFPHKPFSTGEQGTDLYPGQWKKKVWYSNVGVGAMIAGLAAWASKAGTAQVAALYGGPLMVVNAWLVLITWLQHTEVDIPHFEAENWNFIKGALHTVDRPYGKVLDLLHHRIGSTHVAHHVDSTIPHYHALEATNAIKAAFPQHYLYEPTPLPQATWRLATQCAGVEKRGDMHVFVTKE 4622
WPAYL+ G TGGPVRG+T+HF P KPFSTGE+ T+L+PGQWKKKVW S+VG+ AM+ LAA A K G + A+Y GPL + N WLVL TWLQHT+ D+PHFE++NWNFIKGA ++DRPYG + + LHH IGSTHV HH+D TIPHY+A EAT+A+KAAFP+HYLY+PTP+ +ATWR+A +C V+K+G+ VF E
Sbjct: 284 WPAYLLAGVTGGPVRGLTNHFIPVKPFSTGEKNTELFPGQWKKKVWMSDVGILAMVGALAAAAVKFGVWRTLAVYAGPLTITNCWLVLYTWLQHTDTDVPHFESDNWNFIKGAFMSIDRPYGPIFNFLHHGIGSTHVVHHIDCTIPHYNAWEATDAVKAAFPKHYLYDPTPITKATWRVANKCVAVQKKGNQWVFKNDE 482
BLAST of mRNA_C-linearis_contig80.15880.1 vs. uniprot
Match: L1JGR7_GUITC (FA_desaturase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JGR7_GUITC) HSP 1 Score: 285 bits (729), Expect = 6.490e-81 Identity = 127/199 (63.82%), Postives = 153/199 (76.88%), Query Frame = -3
Query: 4026 WPAYLMFGATGGPVRGMTSHFFPHKPFSTGEQGTDLYPGQWKKKVWYSNVGVGAMIAGLAAWASKAGTAQVAALYGGPLMVVNAWLVLITWLQHTEVDIPHFEAENWNFIKGALHTVDRPYGKVLDLLHHRIGSTHVAHHVDSTIPHYHALEATNAIKAAFPQHYLYEPTPLPQATWRLATQCAGVEKRGDMHVFVTKE 4622
WPAYL+ G TGGPVRGMT+HF P KPFSTG++ T+L+PG WKKKVW S++G+ M+ L AW+ K G +AALY GP +V N WLVL TWLQHT+ D+PHF ENWNFIKGA ++DRPYG + D LHHRIGSTHV HH+D TIPHY A AT AI AFP+HYLY+PTPLP+A WR++T+C VE+RG VFV E
Sbjct: 244 WPAYLIAGVTGGPVRGMTNHFIPVKPFSTGDKNTELFPGVWKKKVWLSDIGIVGMLGLLYAWSVKFGFLHMAALYLGPYVVTNCWLVLYTWLQHTDTDVPHFSGENWNFIKGAFMSIDRPYGPIFDFLHHRIGSTHVVHHIDCTIPHYRAKAATEAIAKAFPEHYLYDPTPLPEALWRVSTKCVAVEERGKKWVFVQGE 442
BLAST of mRNA_C-linearis_contig80.15880.1 vs. uniprot
Match: A0A835YKJ6_9STRA (Fatty acid desaturase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKJ6_9STRA) HSP 1 Score: 275 bits (704), Expect = 1.600e-77 Identity = 125/196 (63.78%), Postives = 152/196 (77.55%), Query Frame = -3
Query: 4035 WPAYLMFGATGGPVRGMTSHFFPHKPFSTGEQGTDLYPGQWKKKVWYSNVGVGAMIAGLAAWASKAGTAQVAALYGGPLMVVNAWLVLITWLQHTEVDIPHFEAENWNFIKGALHTVDRPYGKVLDLLHHRIGSTHVAHHVDSTIPHYHALEATNAIKAAFPQHYLYEPTPLPQATWRLATQCAGVEKRGDMHVFV 4622
WPAYL+ GATGGP RG+T+HF P L+PG WKKKVW S GV A LAAWA+ +G A VAALYGGP +VVNAWLV+ TWLQHT D+PHF ++N++FIKGA+H++DRPYG+V+D LHHRIGSTHVAHH++S IPHY A EAT A++AAFP+HYLY+PTP+P A WR+A C VEKRGD +VFV
Sbjct: 264 WPAYLLVGATGGPSRGVTNHFVP--------TSDSLFPGAWKKKVWTSTAGVAVTAAALAAWAAHSGVATVAALYGGPYLVVNAWLVVYTWLQHTNSDVPHFASDNFSFIKGAMHSIDRPYGRVIDFLHHRIGSTHVAHHIESKIPHYRAKEATEALRAAFPEHYLYDPTPVPVALWRVAKYCTAVEKRGDKYVFV 451
BLAST of mRNA_C-linearis_contig80.15880.1 vs. uniprot
Match: W0S9B7_FISSO (Acyl-lipid delta12-acetylenase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=W0S9B7_FISSO) HSP 1 Score: 268 bits (684), Expect = 8.670e-75 Identity = 127/204 (62.25%), Postives = 158/204 (77.45%), Query Frame = -3
Query: 4029 WPAYLMFGATGGPVRGMTSHFFPHKPFSTGEQGT-DLYPGQWKKKVWYSNVGVGAMIAGLAAWASKAGTAQVAALYGGPLMVVNAWLVLITWLQHTEVDIPHFEAENWNFIKGALHTVDRPYGK-----VLDLLHHRIGSTHVAHHVDSTIPHYHALEATNAIKAAFPQHYLYEPTPLPQATWRLATQCAGVEKRGDMHVFVTK 4622
WPAYL+ GATGG RGMT+HF+P +P +T +Q +L+PG WK+KV+ S++G+ A +A +AAWA G QV ALYGGPL+VVNAWLV TWLQHT+VD+PHF + NF+KGALHT+DRPY K V+D LHH+IG+THVAHH DSTIPHY A AT+AIK FP++YLYEPTP+PQA WR+A C+ VEKRGD VFV +
Sbjct: 254 WPAYLLIGATGGHARGMTNHFYP-EPLTTPDQPKKELFPGNWKEKVYQSDIGIAATVAAVAAWALCNGLPQVIALYGGPLLVVNAWLVTYTWLQHTDVDVPHFSEDKHNFVKGALHTMDRPYDKLDPWGVIDFLHHKIGTTHVAHHFDSTIPHYKAQAATDAIKENFPEYYLYEPTPIPQALWRVAKGCSAVEKRGDSWVFVNE 456
BLAST of mRNA_C-linearis_contig80.15880.1 vs. uniprot
Match: A4S9C6_OSTLU (FA_desaturase domain-containing protein n=3 Tax=Ostreococcus TaxID=70447 RepID=A4S9C6_OSTLU) HSP 1 Score: 261 bits (666), Expect = 1.140e-73 Identity = 121/200 (60.50%), Postives = 150/200 (75.00%), Query Frame = -3
Query: 4026 WPAYLMFGATGGPVRGMTSHFFPHKPFSTGEQGTD-LYPGQWKKKVWYSNVGVGAMIAGLAAWASKAGTAQVAALYGGPLMVVNAWLVLITWLQHTEVDIPHFEAENWNFIKGALHTVDRPYGKVLDLLHHRIGSTHVAHHVDSTIPHYHALEATNAIKAAFPQHYLYEPTPLPQATWRLATQCAGVEKRGDMHVFVTKE 4622
WP YL+ GA+GGPVRG T+HF P GE+G L+PG+W KKVW S+VGV A++ LAAWA+ +G A V ALY GP MV N WLVL TWLQHT+VD+PHFE ++WN +KGA T+DRPYG V D LHHRIGSTHVAHH++ TIPHYHA +AT A++ AFP YLY+PTP+ ATWR+ ++C V K+GD VF K+
Sbjct: 161 WPIYLLTGASGGPVRGNTNHFLPFM----GEKGKHALFPGKWAKKVWQSDVGVVAVLGALAAWAAHSGVATVMALYVGPYMVTNFWLVLYTWLQHTDVDVPHFEGDDWNLVKGAFMTIDRPYGPVFDFLHHRIGSTHVAHHINHTIPHYHAKKATEALQKAFPDLYLYDPTPIATATWRVGSKCIAVVKKGDEWVFTDKQ 356 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig80.15880.1 >prot_C-linearis_contig80.15880.1 ID=prot_C-linearis_contig80.15880.1|Name=mRNA_C-linearis_contig80.15880.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=493bp MAVAPSGELMRRQEDVPDDTISAASTSTSTSVPLEGSTGLLEVSTGQDEAback to top mRNA from alignment at C-linearis_contig80:409477..419551+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig80.15880.1 ID=mRNA_C-linearis_contig80.15880.1|Name=mRNA_C-linearis_contig80.15880.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=10075bp|location=Sequence derived from alignment at C-linearis_contig80:409477..419551+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig80:409477..419551+ >mRNA_C-linearis_contig80.15880.1 ID=mRNA_C-linearis_contig80.15880.1|Name=mRNA_C-linearis_contig80.15880.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2958bp|location=Sequence derived from alignment at C-linearis_contig80:409477..419551+ (Chordaria linearis ClinC8C monoicous)back to top |