mRNA_C-linearis_contig80.15874.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig80.15874.1
Unique NamemRNA_C-linearis_contig80.15874.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig80contigC-linearis_contig80:371086..372593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size832
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig80.15874.1prot_C-linearis_contig80.15874.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig80 371251..372253 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930587.838372-UTR-C-linearis_contig80:371085..3712501622930587.838372-UTR-C-linearis_contig80:371085..371250Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 371086..371250 +
1690881147.2889585-UTR-C-linearis_contig80:371085..3712501690881147.2889585-UTR-C-linearis_contig80:371085..371250Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 371086..371250 +
1622930587.910646-UTR-C-linearis_contig80:372253..3725931622930587.910646-UTR-C-linearis_contig80:372253..372593Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 372254..372593 +
1690881147.331847-UTR-C-linearis_contig80:372253..3725931690881147.331847-UTR-C-linearis_contig80:372253..372593Chordaria linearis ClinC8C monoicousUTRC-linearis_contig80 372254..372593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930587.8593912-CDS-C-linearis_contig80:371250..3712871622930587.8593912-CDS-C-linearis_contig80:371250..371287Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 371251..371287 +
1690881147.2990303-CDS-C-linearis_contig80:371250..3712871690881147.2990303-CDS-C-linearis_contig80:371250..371287Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 371251..371287 +
1622930587.875415-CDS-C-linearis_contig80:371697..3718911622930587.875415-CDS-C-linearis_contig80:371697..371891Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 371698..371891 +
1690881147.3080418-CDS-C-linearis_contig80:371697..3718911690881147.3080418-CDS-C-linearis_contig80:371697..371891Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 371698..371891 +
1622930587.8930035-CDS-C-linearis_contig80:372157..3722531622930587.8930035-CDS-C-linearis_contig80:372157..372253Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 372158..372253 +
1690881147.3168626-CDS-C-linearis_contig80:372157..3722531690881147.3168626-CDS-C-linearis_contig80:372157..372253Chordaria linearis ClinC8C monoicousCDSC-linearis_contig80 372158..372253 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig80.15874.1

>prot_C-linearis_contig80.15874.1 ID=prot_C-linearis_contig80.15874.1|Name=mRNA_C-linearis_contig80.15874.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=109bp
MLAITINVLNETGLVVVHKGFNIIKDIRGQGGVYRADAVGDIIDAKSWVI
PCDDDDAARAVAKFLKKQARKSGLKANLSRPKIQLRVGSTLPSFCESSMR
GSQASKPM*
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mRNA from alignment at C-linearis_contig80:371086..372593+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig80.15874.1 ID=mRNA_C-linearis_contig80.15874.1|Name=mRNA_C-linearis_contig80.15874.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1508bp|location=Sequence derived from alignment at C-linearis_contig80:371086..372593+ (Chordaria linearis ClinC8C monoicous)
CCTCCTGCTCCCTCGCTGCCAAGCGTTTGGTTGCTCCTCCCCTCTCTTTC
GAAGACTTTTGGACTCTGTTCGCTGCCACCAAAACTTGTCTTCACGTTCT
ACCAAAGCACCCGCTCTCTGCGACTACTCGGTGTGCTGGATAACCGGCGG
CTTTTCGTGCATTCAATGTTGGCGATAACCATCAACGTCCTCAACGAAAC
AGGTGTGAAGCGATGATCGTGTGCGTTGATGCAGCTGAACCGGATAAAGA
TCCTGTGCAAATTCAAGATGCTTCTTGCACTCGCGCATGCTGTGCAGTCA
GATGCTTCTTGGTACTCGCGCATGCTGTGCAGGCGTTGCATTATTAATCA
TGCCGCCGCGACGATGGTCGAATTGTAGTCTGTGGGACGACGACGGCCAC
AATGACCACCTTGTGAGGGTGATGGGTGACCATTGTCGGGCGGGTGTGAC
ACAACTTCAACAAAGCCACGTACGCGTTGTTGGCGGCGGGCATGCTGCAT
TGTATACATTGTGTGTATCATTAACATCGTCCTCTACTGAACTTGTGGTG
ATTCCTCCCTGCCCTCGCCGCACCTCCTCCTTGTCATTGTTCCTTGACGC
ATAATGCAACAGGTTTGGTCGTCGTGCACAAAGGCTTCAACATCATCAAG
GACATCAGGGGGCAAGGCGGGGTTTACAGAGCTGACGCCGTCGGCGACAT
CATCGACGCTAAGTCGTGGGTGATTCCTTGCGACGACGACGACGCAGCCC
GAGCCGTCGCGAAGTTCCTGAAAAAACAAGCGCGGAAGTCAGGCCTCAAA
GCCAATGTGAGTTGGTTTTCTAGTTTATTGTTCCCCCCCCCTCCATCGTC
AAACACCAGGATGTAAATTGGTTTTTTTTTCAACACCCTCTACCCACGTA
GTACGTACATACACTCCAAGGCACGATATTATCGGGTTGCTGCTTGAATT
CTTAAACTTTGTTCTGTACCTACGACGTACAAGGCTGTGGGTCTGCGTCC
CCCCCCGTCCCGCCCCGAAGCTACATTGATCCGCCTTTGTTGTAATTAAT
GCCCATTTTTTTTTCAACACAGCTTTCCCGCCCCAAGATACAACTTCGTG
TAGGGTCTACGCTGCCATCTTTTTGCGAATCCTCTATGCGCGGAAGTCAG
GCCTCAAAGCCAATGTGAGTTGGTTTTCTAGTTTATTGTTCCCCCCCCCT
CCATCGTGAAACACCAGGATGTAAATTGGTTTTTTTTTTAAACACCCTCT
ACCCACGTAGTACGTACATACACTCCAAGGCACGATATTGTCGGGTTGCT
GCTTGAATTCTTAAACTTTGTTCTGTACCTACGACGTACAAGGCTGTGGG
TCTGCGTCCCCCCCCCCGTCCCGCCCCGAAGCTACATTGATCCGCCTTTG
TTGTAATTAATGCCCATTTTTTTTTCAACACAGCTTTCCCGCCCCAAGAT
ACAACTTCGTGTAGGGTCTACGCTGCCATCTTTTTGCGAACCCTCTATAC
GTACGTAC
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Coding sequence (CDS) from alignment at C-linearis_contig80:371086..372593+

>mRNA_C-linearis_contig80.15874.1 ID=mRNA_C-linearis_contig80.15874.1|Name=mRNA_C-linearis_contig80.15874.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at C-linearis_contig80:371086..372593+ (Chordaria linearis ClinC8C monoicous)
ATGTTGGCGATAACCATCAACGTCCTCAACGAAACAGATGTTGGCGATAA
CCATCAACGTCCTCAACGAAACAGGTTTGGTCGTCGTGCACAAAGGCTTC
AACATCATCAAGGACATCAGGGGGCAAGGCGGGGTTTACAGAGCTGACGC
CGTCGGCGACATCATCGACGCTAAGTCGTGGGTGATTCCTTGCGACGACG
ACGACGCAGCCCGAGCCGTCGCGAAGTTCCTGAAAAAACAAGCGCGGAAG
TCAGGCCTCAAAGCCAATGTTTGGTCGTCGTGCACAAAGGCTTCAACATC
ATCAAGGACATCAGGGGGCAAGGCGGGGTTTACAGAGCTGACGCCGTCGG
CGACATCATCGACGCTAAGTCGTGGGTGATTCCTTGCGACGACGACGACG
CAGCCCGAGCCGTCGCGAAGTTCCTGAAAAAACAAGCGCGGAAGTCAGGC
CTCAAAGCCAATCTTTCCCGCCCCAAGATACAACTTCGTGTAGGGTCTAC
GCTGCCATCTTTTTGCGAATCCTCTATGCGCGGAAGTCAGGCCTCAAAGC
CAATGTGACTTTCCCGCCCCAAGATACAACTTCGTGTAGGGTCTACGCTG
CCATCTTTTTGCGAATCCTCTATGCGCGGAAGTCAGGCCTCAAAGCCAAT
GTGA
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