mRNA_C-linearis_contig80.15867.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig80.15867.1 vs. uniprot
Match: A0A6H5KFS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFS4_9PHAE) HSP 1 Score: 496 bits (1277), Expect = 2.720e-173 Identity = 248/271 (91.51%), Postives = 255/271 (94.10%), Query Frame = 2
Query: 2 QDRVMQLIRLDRGLTGELLLRHPEKLSVPSVVGQLKGRRDLQHWYLGLLFARSPETYGAQEYAPFHALQVSLLAEFAAPFERGRPPAYNSAFLRFLRESGFAPLEAALRECGKRRPPLYDEMAFILGRMGDTRRALTILLEEVCSVPRAIEFVEAHDKDLWYRLIEHSLKDEAFLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQVSVNESCSASVKTDLLRRLRRLNQGQRRATRVEAGARCSHGLCLMPLAGPPR 814
QDRV+QLIRLDR LTGELLLRHPEK SV SVV QL GRRDLQHWYLGLLF RSPE YGAQEYAP+HALQVSLLAEFA PFERGRPPAY SAFLRFLR +GFAPLEAALRECGKRRPPLYDEMA+ILGRMGDTRRALTILLEEV SVPRAIEFVEAHDKDLWYRLIEHSLK E FLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQVSVNESC ASVKTDLLRRLRRLNQGQRRATRV+A ARC +G+CLMPLAGPPR
Sbjct: 97 QDRVLQLIRLDRELTGELLLRHPEKFSVSSVVAQLNGRRDLQHWYLGLLFDRSPEMYGAQEYAPYHALQVSLLAEFAPPFERGRPPAYTSAFLRFLRPTGFAPLEAALRECGKRRPPLYDEMAYILGRMGDTRRALTILLEEVGSVPRAIEFVEAHDKDLWYRLIEHSLKSETFLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQVSVNESCCASVKTDLLRRLRRLNQGQRRATRVDADARCCYGMCLMPLAGPPR 367
BLAST of mRNA_C-linearis_contig80.15867.1 vs. uniprot
Match: D7FS06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS06_ECTSI) HSP 1 Score: 412 bits (1060), Expect = 3.450e-135 Identity = 206/226 (91.15%), Postives = 210/226 (92.92%), Query Frame = 2
Query: 2 QDRVMQLIRLDRGLTGELLLRHPEKLSVPSVVGQLKGRRDLQHWYLGLLFARSPETYGAQEYAPFHALQVSLLAEFAAPFERGRPPAYNSAFLRFLRESGFAPLEAALRECGKRRPPLYDEMAFILGRMGDTRRALTILLEEVCSVPRAIEFVEAHDKDLWYRLIEHSLKDEAFLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQVSVNESC 679
QDRV+QLIRLDR LTGELLLRHPEK SV SVV QLKGRRDLQHWYLGLLF RSPE YGAQEYAPFHALQVSLLAEFA PFERGRPPAY SAFLRFLR +GFAPLEAALRECGKRRPPLYDEMA+ILGRMGDTRRALTILLEEV SVPRAIEFVEAHDKDLWYRLIEHSLK E FLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQV + C
Sbjct: 675 QDRVLQLIRLDRELTGELLLRHPEKFSVSSVVSQLKGRRDLQHWYLGLLFDRSPEMYGAQEYAPFHALQVSLLAEFAPPFERGRPPAYTSAFLRFLRPTGFAPLEAALRECGKRRPPLYDEMAYILGRMGDTRRALTILLEEVGSVPRAIEFVEAHDKDLWYRLIEHSLKSETFLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQVRIVWCC 900
BLAST of mRNA_C-linearis_contig80.15867.1 vs. uniprot
Match: A0A836CBT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT2_9STRA) HSP 1 Score: 218 bits (555), Expect = 7.450e-61 Identity = 125/244 (51.23%), Postives = 148/244 (60.66%), Query Frame = 2
Query: 8 RVMQLIRLDRGLTGELLLRHPEKLSVPSVVGQLKGRRDL------------QHWYLGLLFARSPETYGAQEYAPFHALQVSLLAEFAAPFERGRPPAYNSAFLRFLRESGFAPLEAALRECGKRRPPLYDEMAFILGRMGDTRRALTILLEEVCSVPRAIEFVEAHDKDLWYRLIEHSLKDEAFLSGLLDHAGVY----------------------------------DVDLARLVAEIPKGM 601
RV++LI+L + G LL+RH +KL VV QL+GRRDL QHWYL LLF ++PE Y E+A FHALQVSL A+FA PF+ RPP Y+S FLRFLR S FAPLEAAL EC KRRPPL+DEM AL++LLEEV RAIEFV AHDKDLWYRLI++SL++E FL GLLDHAGVY DVDLA L+ +P+GM
Sbjct: 1077 RVLELIQLSQADAGALLVRHVDKLPAAQVVPQLRGRRDLXXXXXXXXXXXXQHWYLHLLFTQAPELYNTPEHAQFHALQVSLYAQFAPPFQPRRPPPYDSDFLRFLRGSAFAPLEAALTECEKRRPPLWDEMV-----------ALSVLLEEVDCARRAIEFVGAHDKDLWYRLIDYSLRNERFLGGLLDHAGVYTLVLRDTYXXXXXXXXXXXXXXXXXXXXXXXXXXDVDLAGLIRGVPEGM 1309
BLAST of mRNA_C-linearis_contig80.15867.1 vs. uniprot
Match: W7TUN1_9STRA (Vacuolar protein sorting-associated protein 41 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUN1_9STRA) HSP 1 Score: 184 bits (466), Expect = 5.940e-49 Identity = 114/269 (42.38%), Postives = 142/269 (52.79%), Query Frame = 2
Query: 131 WYLGLLFARSPETYGAQEYAPFHALQVSLLAEFAAPF----ERGRP-------------------------------PAYNSAFLRFLRESGFAPLEAALRECGKRRPPLYDEMAFILGRMGDTRRALTILLEEVCSVPRAIEFVEAHDKDLWYRLIEHSLKDEAFLSGLLDHAGVYDVDLAR-LVAEIPKGMHIPGLRDKVVKIISDYHFQVSVNESCSASVKTDLLRRLRRLNQGQRRATRVEAGARCSHGLCLMPLAGPPRGAPRP 829
WYL LLF R P+ Y E+A FH LQV L A A PF ER PAY S L FL S LE AL C +R+PPLYDE+ +IL R+G + AL +LL E+ SV RAIEFV+ HDK LW L HSL+ FL+GLL HAG Y+VDLAR LV +IP M I GL+ K++ I++ Y F+ +++E + D + RR + QRRA RV+ G CL P AGP P P
Sbjct: 932 WYLDLLFRRLPDHYNHPEFAQFHVLQVELYAAAAPPFCPAPERSHTNAKDEDTVKIKDSGAHGSGENASDEEDGVAEPAYTSDLLSFLMWSNHVRLETALAACERRQPPLYDEIVYILSRIGHNKEALRLLLVEIRSVRRAIEFVDRHDKGLWRELTAHSLQHPRFLAGLLRHAGNYNVDLARSLVEDIPDAMRIRGLQPKLLNIVASYRFERTLHEESRRVAEHDYVAATRRFHHAQRRAVRVDIPQSRCQG-CLEPFAGPSPAKPPP 1199
BLAST of mRNA_C-linearis_contig80.15867.1 vs. uniprot
Match: A0A7S0EHW5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EHW5_9CRYP) HSP 1 Score: 172 bits (436), Expect = 1.460e-47 Identity = 106/256 (41.41%), Postives = 152/256 (59.38%), Query Frame = 2
Query: 8 RVMQLIRLDRGLTGELLLRHPEKLSVPSVVGQLKGRRDLQHWYLGLLFARSPETYGAQEYAPFHALQVSLLAEFAAPFERGRPPAYNSAFLRFLRESGFAPLEAALRECGKRRPPLYDEMAFILGRMGDTRRALTILLEEVCSVPRAIEFVEAHD-KDLWYRLIEHSLKDEAFLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQVSVNESCSASVKTDLLRRLRRLNQGQRRATRVEAGARC 772
+V L + D ++L+ P+++S VV QL+ +R + H YL LF + P GA FH LQ+ L A+F S L FL +S LE AL+ C KR LY EM F+LGRMG+T++AL +LLE++ VP+AIEF +A D ++LW LI L + LL G + VD ++V+ IP GM I G+R+K++KIISDYH Q+S+ E C +++D++ RRLN+ QRRATR++A RC
Sbjct: 99 KVASLAKFDEDRAVKMLVGCPDQISPSYVVEQLRDKRKVLHAYLDALFDKDPRA-GAN----FHELQIELYADFD-----------KSKLLPFLSQSNNYRLENALKLCEKRM--LYPEMVFVLGRMGNTQQALRLLLEQMQDVPKAIEFCQAQDDEELWESLISFCLSRPNLVGPLLQDIGAH-VDPVKVVSRIPVGMKIDGIREKLIKIISDYHLQMSLREGCERILRSDVVLLERRLNKAQRRATRIDARTRC 335
BLAST of mRNA_C-linearis_contig80.15867.1 vs. uniprot
Match: A0A485LHE2_9STRA (Aste57867_21416 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHE2_9STRA) HSP 1 Score: 175 bits (443), Expect = 5.820e-46 Identity = 102/268 (38.06%), Postives = 160/268 (59.70%), Query Frame = 2
Query: 2 QDRVMQLIRLDRGLTGELLLRH--PEKLSVPSVVGQLKGRRDLQHWYLGLLFARSPETYGAQEYAPFHALQVSLLAEFAAPFERGRPPAYNSAFLRFLRESGFAPLEAALRECGKRRPPLYDEMAFILGRMGDTRRALTILLEEVCSVPRAIEFVEAHDKDLWYRLIEHSLKDEAFLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQVSVNESCSASVKTDLLRRLRRLNQGQRRATRVEAGARCSHGLCLMPL 799
Q++V+ L+ +DR +L+ ++L V ++V QL+ +R+L H YL LF Y + YA H LQVSL AEFA P Y L+FL+ S F PLE A + C +R PPL+D M FILGRMG ++AL ++ ++ +V +AI+FV+ +D +LW LIE SL ++ ++ LL++A + +D +++ +IP+ M I GL+ KV +II++Y Q+S+ C+ +TD LRRL +R+A RV +C G+C +
Sbjct: 612 QNKVVNLMMIDRESALRMLVHQIKSDQLKVSAIVKQLEHKRELLHEYLHNLFVHRLADYNTESYASLHELQVSLYAEFA--------PNY---LLKFLQTSAFVPLERAYKFCSERSPPLWDAMIFILGRMGQHKKALDFIMTQLQNVKQAIQFVQDNDDELWDYLIEISLTNKEYIEELLEYACDHKIDPIKVMRKIPEDMEIAGLKTKVQQIIANYRIQLSLCHGCTKVFETDRADLLRRLITNRRKARRVTPQTQC--GICFQQM 866
BLAST of mRNA_C-linearis_contig80.15867.1 vs. uniprot
Match: A0A1V9YI15_9STRA (Vacuolar protein sorting-associated protein 41 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YI15_9STRA) HSP 1 Score: 175 bits (443), Expect = 5.840e-46 Identity = 101/275 (36.73%), Postives = 163/275 (59.27%), Query Frame = 2
Query: 2 QDRVMQLIRLDRGLTGELLLRH--PEKLSVPSVVGQLKGRRDLQHWYLGLLFARSPETYGAQEYAPFHALQVSLLAEFAAPFERGRPPAYNSAFLRFLRESGFAPLEAALRECGKRRPPLYDEMAFILGRMGDTRRALTILLEEVCSVPRAIEFVEAHDKDLWYRLIEHSLKDEAFLSGLLDHAGVYDVDLARLVAE----IPKGMHIPGLRDKVVKIISDYHFQVSVNESCSASVKTDLLRRLRRLNQGQRRATRVEAGARCSHGLCLMPLAGP 808
Q++V+ L+ +DR +L+ ++L V S+V QL+ +R+L H YL LF Y + Y+ H LQ+SL AEFA F LRFL+ S F PLE A + C +R PPL+D M FILGRMG ++AL ++ ++ +V +AI+FV+ +D LW LIE SL + F++ LL++A + +D +++ + IP+ M I GL+ KV +II++Y Q+++ + C+ ++D + LRRL +++ RV +C G+CL+P+ P
Sbjct: 605 QNKVVNLMLIDRDAAIRMLVHQIKSDELKVHSIVKQLEHKRELLHEYLHNLFVHRLVDYNTERYSSLHELQISLYAEFAPHF-----------LLRFLQTSSFVPLEKAYKFCSERSPPLWDAMVFILGRMGQHKKALDFIMTQLKNVKQAIQFVQDNDNALWDYLIEISLTHKDFMAELLEYACEHKIDPIKVIKKVQDAIPEDMEITGLKSKVQQIITNYRIQMTLYQGCTKVFESDRIDLLRRLIAARKKPRRVTMQTQC--GICLLPIKQP 866
BLAST of mRNA_C-linearis_contig80.15867.1 vs. uniprot
Match: A0A067BPI1_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BPI1_SAPPC) HSP 1 Score: 174 bits (441), Expect = 1.030e-45 Identity = 100/268 (37.31%), Postives = 156/268 (58.21%), Query Frame = 2
Query: 2 QDRVMQLIRLDRGLTGELLLRH--PEKLSVPSVVGQLKGRRDLQHWYLGLLFARSPETYGAQEYAPFHALQVSLLAEFAAPFERGRPPAYNSAFLRFLRESGFAPLEAALRECGKRRPPLYDEMAFILGRMGDTRRALTILLEEVCSVPRAIEFVEAHDKDLWYRLIEHSLKDEAFLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQVSVNESCSASVKTDLLRRLRRLNQGQRRATRVEAGARCSHGLCLMPL 799
Q++V+ L+ +DR +L+ ++L V ++V QL+ +R+L H YL LF Y +Y+ H +QV+L AEFA LRFL+ S F PLE A + C +R PPL+D M FILGRMG ++AL ++ ++ +V +AI+FVE HD LW LIE SL + LL++A + +D +++ +IP+ M I GL+DKV++II++Y Q+S+ C+ +TD + LRRL +++ RV C G+C + L
Sbjct: 582 QNKVVNLMLIDRDAALRMLVHQIKSDELKVHAIVKQLEHKRELLHEYLHNLFVHRLVDYNTDKYSSLHEMQVALYAEFAP-----------HVLLRFLQTSSFVPLEKAYKFCSERSPPLWDAMVFILGRMGQHKKALDFIMTQLKNVKQAIQFVEDHDSGLWDYLIEISLSHTECMEELLEYACDHKIDPIKVMQKIPEDMEIAGLKDKVLQIITNYRIQMSLYRGCTKVFETDRIEHLRRLVVARKKPRRVTLQTSC--GVCSLLL 836
BLAST of mRNA_C-linearis_contig80.15867.1 vs. uniprot
Match: A0A7S1DIV9_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DIV9_HEMAN) HSP 1 Score: 171 bits (432), Expect = 1.100e-45 Identity = 103/258 (39.92%), Postives = 152/258 (58.91%), Query Frame = 2
Query: 2 QDRVMQLIRLDRGLTGELLLRHPEKLSVPSVVGQLKGRRDLQHWYLGLLFARSPETYGAQEYAPFHALQVSLLAEFAAPFERGRPPAYNSAFLRFLRESGFAPLEAALRECGKRRPPLYDEMAFILGRMGDTRRALTILLEEVCSVPRAIEF-VEAHDKDLWYRLIEHSLKDEAFLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQVSVNESCSASVKTDLLRRLRRLNQGQRRATRVEAGARC 772
+D+V+ L++ ++L+ +K+ V VV QLK R LQH YL LF + P + FH LQV L AE P L FLR+S LE AL C +++ LY EM F+LGRMG+ ++AL++LLE V +AI+F V D++LW LI++ L ++ LL G + VD ++V+ IP GMHI GLR+K++KII+DYH Q+S+ E C +++D++ RL++GQ+R RV+A ARC
Sbjct: 323 RDKVLALMKFHEDKALKMLVNCTDKIPVGHVVPQLKEDRRLQHMYLDALFQKDPRAG-----SDFHELQVELYAEIEYP-----------KLLPFLRQSNHYRLETALALCERKK--LYPEMVFVLGRMGNGKQALSLLLEHTSDVQQAIDFCVHQGDEELWEDLIKYCLNHSDLVAPLLHTIGAH-VDPVKVVSRIPLGMHIDGLREKLIKIIADYHLQMSLKEGCERILESDVISLAHRLHKGQKRGVRVDARARC 561
BLAST of mRNA_C-linearis_contig80.15867.1 vs. uniprot
Match: A0A5D6XHY4_9STRA (RING-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XHY4_9STRA) HSP 1 Score: 174 bits (440), Expect = 1.620e-45 Identity = 102/273 (37.36%), Postives = 152/273 (55.68%), Query Frame = 2
Query: 2 QDRVMQLIRLDRGLTGELLLRHPEKLSVPSVVGQLKGRRDLQHWYLGLLFARSPETYGAQEYAPFHALQVSLLAEFAAPFERGRPPAYNSAFLRFLRESGFAPLEAALRECGKRRPPLYDEMAFILGRMGDTRRALTILLEEVCSVPRAIEFVEAHDKDLWYRLIEHSLKDEAFLSGLLDHAGVYDVDLARLVAEIPKGMHIPGLRDKVVKIISDYHFQVSVNESCSASVKTDLLRRLRRLNQGQRRATRVEAGARCSHGLCLMPLAGPPRGA 820
Q +V L+++DR +L+ E+L VP +V QL+ R+L H YL LF P Y A+ YAP H QV+L AEFA F LRFL+ S F PLE A C +R PPL+D M +ILGRMG +RAL ++L ++ + AI FV+ +D LW +I+ SL +A + LL A + +D +L+ +IP+ M I L+ K++ II++Y Q ++ CS ++D ++ L+R ++A RV A C +C L P G+
Sbjct: 665 QHKVANLMQIDRASAVRMLVAQTEQLKVPDIVKQLEHDRELLHEYLHELFVLRPSEYNAEAYAPLHEAQVALYAEFAPAF-----------LLRFLQTSNFVPLEKAYTYCSERNPPLWDAMIYILGRMGQHKRALDLILTQLHDIHHAIRFVQENDASLWDYVIDLSLTSQANVEQLLQFASQHKIDPIKLIRKIPEDMPIDNLKAKLLDIIANYRIQQNLCTGCSNVFESDRVQLLQRQVATHKKARRVAAKTLCL--ICGDVLRAPAHGS 924 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig80.15867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig80.15867.1 >prot_C-linearis_contig80.15867.1 ID=prot_C-linearis_contig80.15867.1|Name=mRNA_C-linearis_contig80.15867.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=274bp MQLIRLDRGLTGELLLRHPEKLSVPSVVGQLKGRRDLQHWYLGLLFARSPback to top mRNA from alignment at C-linearis_contig80:325240..327421- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig80.15867.1 ID=mRNA_C-linearis_contig80.15867.1|Name=mRNA_C-linearis_contig80.15867.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2182bp|location=Sequence derived from alignment at C-linearis_contig80:325240..327421- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig80:325240..327421- >mRNA_C-linearis_contig80.15867.1 ID=mRNA_C-linearis_contig80.15867.1|Name=mRNA_C-linearis_contig80.15867.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1644bp|location=Sequence derived from alignment at C-linearis_contig80:325240..327421- (Chordaria linearis ClinC8C monoicous)back to top |